Wall clock time and date at job start Tue Mar 31 2020 18:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.51998 * 2 1 4 4 C 1.53190 * 109.50073 * 120.08644 * 2 1 3 5 5 N 1.46931 * 108.77385 * 174.58460 * 4 2 1 6 6 S 1.65594 * 120.62757 * 126.37063 * 5 4 2 7 7 O 1.42099 * 104.27925 * 206.06999 * 6 5 4 8 8 O 1.42101 * 104.28077 * 333.92804 * 6 5 4 9 9 C 1.81398 * 104.45184 * 89.99950 * 6 5 4 10 10 C 1.53000 * 109.47462 * 180.02562 * 9 6 5 11 11 C 1.53001 * 109.46728 * 300.00024 * 10 9 6 12 12 C 1.53001 * 109.47342 * 59.99598 * 10 9 6 13 13 C 1.50698 * 109.47383 * 180.02562 * 10 9 6 14 14 H 1.07999 * 120.00233 * 357.68794 * 13 10 9 15 15 C 1.37874 * 120.00187 * 177.69420 * 13 10 9 16 16 N 1.31515 * 119.99995 * 6.57859 * 15 13 10 17 17 Si 1.86803 * 120.00164 * 186.57776 * 15 13 10 18 18 H 1.48498 * 109.46848 * 84.99635 * 17 15 13 19 19 H 1.48498 * 109.46927 * 204.99310 * 17 15 13 20 20 H 1.48496 * 109.46900 * 324.99395 * 17 15 13 21 21 C 1.46919 * 118.73727 * 306.38941 * 5 4 2 22 22 C 1.53197 * 108.77777 * 53.61217 * 21 5 4 23 23 C 1.53039 * 109.30886 * 305.35932 * 22 21 5 24 24 H 1.08998 * 109.45210 * 301.35169 * 23 22 21 25 25 C 1.50700 * 109.45753 * 181.38400 * 23 22 21 26 26 O 1.20833 * 120.00006 * 240.21234 * 25 23 22 27 27 O 1.34228 * 120.00183 * 59.93199 * 25 23 22 28 28 H 1.09008 * 109.47284 * 180.08131 * 1 2 3 29 29 H 1.09001 * 109.46755 * 300.07272 * 1 2 3 30 30 H 1.08994 * 109.47679 * 60.07608 * 1 2 3 31 31 H 1.08995 * 109.58609 * 294.37487 * 4 2 1 32 32 H 1.09001 * 109.58511 * 54.79830 * 4 2 1 33 33 H 1.09005 * 109.47266 * 299.99940 * 9 6 5 34 34 H 1.09004 * 109.47314 * 59.99478 * 9 6 5 35 35 H 1.08993 * 109.47437 * 66.67031 * 11 10 9 36 36 H 1.09008 * 109.46779 * 186.67124 * 11 10 9 37 37 H 1.09000 * 109.47312 * 306.66788 * 11 10 9 38 38 H 1.09005 * 109.46707 * 60.00533 * 12 10 9 39 39 H 1.09001 * 109.47048 * 180.02562 * 12 10 9 40 40 H 1.09000 * 109.47282 * 300.00828 * 12 10 9 41 41 H 0.97000 * 120.00201 * 180.02562 * 16 15 13 42 42 H 1.09007 * 109.58259 * 173.39512 * 21 5 4 43 43 H 1.09000 * 109.59020 * 293.67950 * 21 5 4 44 44 H 1.09001 * 109.49839 * 185.41048 * 22 21 5 45 45 H 1.08996 * 109.49514 * 65.30984 * 22 21 5 46 46 H 0.96694 * 116.99927 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0414 -0.7239 1.2495 5 7 3.5047 -0.8292 1.1693 6 16 4.4588 -0.2844 2.4082 7 8 5.6956 0.0331 1.7846 8 8 3.6762 0.7212 3.0373 9 6 4.6469 -1.7206 3.5002 10 6 5.5190 -1.3398 4.6982 11 6 6.8958 -0.8908 4.2045 12 6 4.8558 -0.1966 5.4690 13 6 5.6757 -2.5332 5.6050 14 1 5.1704 -3.4588 5.3717 15 6 6.4640 -2.4435 6.7326 16 7 6.9742 -1.2845 7.0877 17 14 6.8075 -3.9681 7.7559 18 1 7.9632 -4.7011 7.1795 19 1 7.1213 -3.5675 9.1509 20 1 5.6110 -4.8476 7.7507 21 6 4.1052 -1.4267 -0.0311 22 6 3.5707 -0.6949 -1.2663 23 6 2.0407 -0.7231 -1.2485 24 1 1.6968 -1.7573 -1.2354 25 6 1.5116 -0.0336 -2.4797 26 8 0.8034 0.9393 -2.3700 27 8 1.8316 -0.4968 -3.6982 28 1 -0.3634 -1.0277 0.0015 29 1 -0.3633 0.5150 0.8894 30 1 -0.3634 0.5126 -0.8906 31 1 1.7638 -0.1581 2.1388 32 1 1.6053 -1.7217 1.2978 33 1 3.6660 -2.0403 3.8523 34 1 5.1189 -2.5353 2.9509 35 1 6.7958 0.0399 3.6461 36 1 7.5544 -0.7332 5.0587 37 1 7.3180 -1.6594 3.5571 38 1 3.8749 -0.5165 5.8207 39 1 5.4774 0.0750 6.3222 40 1 4.7428 0.6665 4.8128 41 1 7.5292 -1.2214 7.8808 42 1 5.1896 -1.3245 0.0134 43 1 3.8396 -2.4824 -0.0858 44 1 3.9333 -1.1895 -2.1674 45 1 3.9158 0.3390 -1.2542 46 1 1.4681 -0.0217 -4.4578 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600940276.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:10 Heat of formation + Delta-G solvation = -193.667870 kcal Electronic energy + Delta-G solvation = -28632.101821 eV Core-core repulsion = 24647.712696 eV Total energy + Delta-G solvation = -3984.389124 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.67565 -39.31305 -38.16401 -38.10525 -37.13186 -36.84918 -34.40660 -33.62460 -33.06885 -28.37863 -28.12671 -27.69391 -27.24167 -26.49959 -23.27783 -23.08601 -21.29182 -21.01610 -19.63506 -19.03101 -18.81252 -17.94310 -17.65129 -17.18319 -16.92874 -16.62576 -16.56086 -15.83120 -15.32250 -15.08558 -14.98297 -14.73669 -14.65287 -14.41815 -14.37277 -13.80867 -13.59570 -13.53724 -13.20757 -13.12517 -12.96625 -12.88219 -12.79539 -12.75573 -12.51917 -12.42826 -12.32359 -12.18082 -12.13288 -11.93617 -11.91548 -11.77970 -11.56226 -11.48499 -11.32457 -11.12708 -10.65694 -10.38600 -9.89386 -8.02683 -6.21026 -0.62455 1.21793 1.45690 1.47280 1.55272 1.81330 2.14448 2.45329 2.94437 3.19023 3.24817 3.47932 3.65956 3.84079 3.97788 4.00540 4.15777 4.21457 4.35193 4.42348 4.55414 4.60075 4.67275 4.70263 4.73159 4.83499 4.84799 4.87229 4.88607 4.99605 5.06661 5.08450 5.13603 5.19390 5.33660 5.36968 5.39548 5.49140 5.65412 5.68861 5.76441 5.97402 6.12311 6.35219 6.84018 7.04146 7.47269 8.96975 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.027442 B = 0.003035 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.082934 B = 9223.719480 C = 9285.494839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.087 4.087 3 H 0.054 0.946 4 C 0.116 3.884 5 N -1.004 6.004 6 S 2.605 3.395 7 O -0.988 6.988 8 O -0.991 6.991 9 C -0.583 4.583 10 C 0.068 3.932 11 C -0.156 4.156 12 C -0.160 4.160 13 C -0.518 4.518 14 H 0.065 0.935 15 C 0.017 3.983 16 N -0.908 5.908 17 Si 0.954 3.046 18 H -0.276 1.276 19 H -0.289 1.289 20 H -0.266 1.266 21 C 0.108 3.892 22 C -0.120 4.120 23 C -0.072 4.072 24 H 0.144 0.856 25 C 0.488 3.512 26 O -0.543 6.543 27 O -0.509 6.509 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.026 0.974 36 H 0.068 0.932 37 H 0.044 0.956 38 H 0.039 0.961 39 H 0.071 0.929 40 H 0.029 0.971 41 H 0.261 0.739 42 H 0.091 0.909 43 H 0.111 0.889 44 H 0.116 0.884 45 H 0.052 0.948 46 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.331 -4.113 -19.720 23.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.108 4.108 3 H 0.072 0.928 4 C -0.008 4.008 5 N -0.842 5.842 6 S 2.705 3.295 7 O -0.979 6.979 8 O -0.982 6.982 9 C -0.716 4.716 10 C 0.066 3.934 11 C -0.214 4.214 12 C -0.218 4.218 13 C -0.557 4.557 14 H 0.083 0.917 15 C -0.182 4.182 16 N -0.547 5.547 17 Si 0.780 3.220 18 H -0.202 1.202 19 H -0.215 1.215 20 H -0.191 1.191 21 C -0.016 4.016 22 C -0.159 4.159 23 C -0.091 4.091 24 H 0.162 0.838 25 C 0.332 3.668 26 O -0.433 6.433 27 O -0.322 6.322 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.126 0.874 33 H 0.154 0.846 34 H 0.158 0.842 35 H 0.045 0.955 36 H 0.087 0.913 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.090 0.910 40 H 0.048 0.952 41 H 0.071 0.929 42 H 0.110 0.890 43 H 0.129 0.871 44 H 0.134 0.866 45 H 0.071 0.929 46 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -10.897 -3.084 -19.170 22.265 hybrid contribution 0.093 -0.383 0.583 0.703 sum -10.804 -3.467 -18.587 21.777 Atomic orbital electron populations 1.22033 0.92837 1.03339 1.03292 1.21300 0.97372 0.98977 0.93128 0.92766 1.21750 0.77842 1.02733 0.98492 1.57705 1.16434 1.78601 1.31480 1.04993 0.72975 0.77246 0.74330 1.93489 1.45495 1.83733 1.75141 1.93487 1.70655 1.56712 1.77313 1.30500 1.10041 1.18824 1.12186 1.17928 0.90361 0.95044 0.90040 1.22135 1.00682 0.98121 1.00468 1.22240 1.00030 0.97039 1.02470 1.21302 1.29379 0.97351 1.07625 0.91663 1.25692 0.95773 0.98392 0.98368 1.69960 1.34264 1.24703 1.25736 0.85632 0.78740 0.80047 0.77580 1.20155 1.21527 1.19093 1.21762 0.98809 0.98748 0.82261 1.21877 0.92204 1.01848 0.99948 1.21136 0.97224 1.02538 0.88175 0.83812 1.23628 0.76276 0.81443 0.85470 1.90669 1.37234 1.27915 1.87518 1.84496 1.71150 1.59704 1.16846 0.90448 0.92352 0.91173 0.89601 0.87384 0.84584 0.84240 0.95478 0.91298 0.93696 0.94206 0.90979 0.95224 0.92949 0.89045 0.87135 0.86607 0.92922 0.71249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 8.86 71.98 0.64 -2.12 16 2 C -0.09 -1.74 2.06 -10.71 -0.02 -1.77 16 3 H 0.05 1.41 8.13 -2.39 -0.02 1.39 16 4 C 0.12 2.40 5.71 86.36 0.49 2.90 16 5 N -1.00 -24.64 3.22 -513.06 -1.65 -26.29 16 6 S 2.61 92.57 4.48 -56.49 -0.25 92.31 16 7 O -0.99 -39.94 14.35 -127.65 -1.83 -41.77 16 8 O -0.99 -41.11 14.21 -127.65 -1.81 -42.92 16 9 C -0.58 -21.19 5.11 71.98 0.37 -20.82 16 10 C 0.07 3.25 0.52 -52.93 -0.03 3.22 16 11 C -0.16 -7.66 7.58 71.98 0.55 -7.12 16 12 C -0.16 -7.96 7.80 71.98 0.56 -7.40 16 13 C -0.52 -26.49 8.01 25.60 0.20 -26.29 16 14 H 0.07 3.18 7.75 -2.91 -0.02 3.16 16 15 C 0.02 0.90 5.09 84.65 0.43 1.33 16 16 N -0.91 -50.14 9.39 21.45 0.20 -49.94 16 17 Si 0.95 41.52 29.54 68.60 2.03 43.55 16 18 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 19 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 20 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 21 C 0.11 1.98 6.43 86.37 0.56 2.53 16 22 C -0.12 -1.92 5.30 30.67 0.16 -1.75 16 23 C -0.07 -1.08 2.14 -11.51 -0.02 -1.11 16 24 H 0.14 1.29 8.14 -2.39 -0.02 1.27 16 25 C 0.49 8.19 7.33 71.24 0.52 8.71 16 26 O -0.54 -12.77 14.34 21.94 0.31 -12.46 16 27 O -0.51 -5.50 13.30 -51.40 -0.68 -6.18 16 28 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.07 1.45 5.42 -2.39 -0.01 1.44 16 31 H 0.09 2.07 6.86 -2.39 -0.02 2.05 16 32 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.14 4.38 8.14 -2.39 -0.02 4.36 16 34 H 0.14 4.39 8.14 -2.39 -0.02 4.37 16 35 H 0.03 1.28 5.96 -2.39 -0.01 1.26 16 36 H 0.07 3.71 5.99 -2.38 -0.01 3.70 16 37 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 39 H 0.07 3.94 6.01 -2.39 -0.01 3.93 16 40 H 0.03 1.41 5.46 -2.39 -0.01 1.40 16 41 H 0.26 13.83 8.31 -92.71 -0.77 13.06 16 42 H 0.09 1.90 6.86 -2.38 -0.02 1.88 16 43 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.12 1.25 8.08 -2.39 -0.02 1.23 16 45 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.43 1.37 9.10 -74.06 -0.67 0.70 16 Total: -1.00 -73.10 361.44 1.03 -72.07 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: 0.32 Total: 21.32 kcal Atomic # 6 Polarization: -54.10 SS G_CDS: 4.41 Total: -49.69 kcal Atomic # 7 Polarization: -74.78 SS G_CDS: -1.45 Total: -76.23 kcal Atomic # 8 Polarization: -99.32 SS G_CDS: -4.01 Total: -103.34 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Atomic # 16 Polarization: 92.57 SS G_CDS: -0.25 Total: 92.31 kcal Total: -73.10 1.03 -72.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600940276.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.598 kcal (2) G-P(sol) polarization free energy of solvation -73.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds