Wall clock time and date at job start Tue Mar 31 2020 17:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34230 * 117.00211 * 2 1 4 4 O 1.20827 * 119.99741 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99964 * 180.02562 * 3 2 1 6 6 C 1.52997 * 110.88614 * 300.69653 * 5 3 2 7 7 C 1.54905 * 111.00425 * 64.58018 * 5 3 2 8 8 N 1.47425 * 104.83200 * 155.11928 * 7 5 3 9 9 S 1.65596 * 125.65164 * 155.90502 * 8 7 5 10 10 O 1.42102 * 104.27762 * 206.07451 * 9 8 7 11 11 O 1.42105 * 104.27608 * 333.92948 * 9 8 7 12 12 C 1.81399 * 104.45018 * 90.00173 * 9 8 7 13 13 C 1.53002 * 109.47343 * 180.02562 * 12 9 8 14 14 C 1.52999 * 109.47045 * 180.02562 * 13 12 9 15 15 C 1.50710 * 109.46821 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99892 * 359.97438 * 15 14 13 17 17 C 1.37871 * 119.99519 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00642 * 359.97438 * 17 15 14 19 19 Si 1.86809 * 119.99658 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47101 * 89.99412 * 19 17 15 21 21 H 1.48498 * 109.46768 * 209.99801 * 19 17 15 22 22 H 1.48498 * 109.46928 * 329.99449 * 19 17 15 23 23 C 1.47029 * 108.70410 * 335.87168 * 8 7 5 24 24 C 1.54322 * 107.26741 * 1.05858 * 23 8 7 25 25 H 1.09004 * 110.72128 * 263.82683 * 24 23 8 26 26 C 1.53003 * 110.71992 * 140.55970 * 24 23 8 27 27 H 1.09003 * 109.47293 * 60.00683 * 1 2 3 28 28 H 1.09006 * 109.46933 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47243 * 299.99860 * 1 2 3 30 30 H 1.09002 * 109.47153 * 182.42934 * 6 5 3 31 31 H 1.09001 * 109.46832 * 62.43125 * 6 5 3 32 32 H 1.09004 * 109.47261 * 302.43106 * 6 5 3 33 33 H 1.08991 * 110.36949 * 273.95576 * 7 5 3 34 34 H 1.08998 * 110.36797 * 36.17204 * 7 5 3 35 35 H 1.08998 * 109.47056 * 299.99928 * 12 9 8 36 36 H 1.09005 * 109.47003 * 60.00072 * 12 9 8 37 37 H 1.08998 * 109.46781 * 299.99845 * 13 12 9 38 38 H 1.08995 * 109.46848 * 59.99541 * 13 12 9 39 39 H 1.08998 * 109.47166 * 299.99562 * 14 13 12 40 40 H 1.08995 * 109.47189 * 59.99952 * 14 13 12 41 41 H 0.97000 * 120.00228 * 180.02562 * 18 17 15 42 42 H 1.08998 * 109.88255 * 120.47593 * 23 8 7 43 43 H 1.08998 * 109.88228 * 241.48632 * 23 8 7 44 44 H 1.09004 * 109.46798 * 306.46845 * 26 24 23 45 45 H 1.08996 * 109.47472 * 66.47502 * 26 24 23 46 46 H 1.09008 * 109.46796 * 186.47985 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.1497 0.5743 1.2282 7 6 4.1528 0.6842 -1.3071 8 7 5.4623 1.3428 -1.4645 9 16 6.7490 0.7415 -2.3160 10 8 7.8840 1.3381 -1.7036 11 8 6.5584 -0.6665 -2.2910 12 6 6.5203 1.3852 -3.9964 13 6 7.6600 0.8928 -4.8907 14 6 7.4674 1.4362 -6.3079 15 6 8.5903 0.9517 -7.1885 16 1 9.3641 0.3198 -6.7783 17 6 8.6303 1.3161 -8.5176 18 7 7.6882 2.0860 -9.0171 19 14 10.0218 0.7150 -9.6094 20 1 9.6394 -0.5778 -10.2319 21 1 10.2852 1.7177 -10.6726 22 1 11.2469 0.5274 -8.7915 23 6 5.4364 2.6225 -0.7409 24 6 4.0468 2.7479 -0.0814 25 1 3.3759 3.3387 -0.7050 26 6 4.1644 3.3565 1.3174 27 1 -0.3634 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 5.2344 0.6822 1.2272 31 1 3.8898 -0.4839 1.2007 32 1 3.7405 1.0256 2.1321 33 1 4.2795 -0.3942 -1.2125 34 1 3.5053 0.9166 -2.1525 35 1 5.5687 1.0326 -4.3941 36 1 6.5224 2.4749 -3.9715 37 1 8.6118 1.2450 -4.4931 38 1 7.6575 -0.1969 -4.9154 39 1 6.5155 1.0844 -6.7057 40 1 7.4701 2.5259 -6.2827 41 1 7.7162 2.3420 -9.9523 42 1 6.2122 2.6312 0.0246 43 1 5.5942 3.4456 -1.4378 44 1 4.8828 2.7835 1.9037 45 1 4.5027 4.3895 1.2369 46 1 3.1914 3.3299 1.8081 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601482909.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:35 Heat of formation + Delta-G solvation = -170.002375 kcal Electronic energy + Delta-G solvation = -27586.609970 eV Core-core repulsion = 23603.247058 eV Total energy + Delta-G solvation = -3983.362911 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.31794 -39.14035 -36.96987 -36.75689 -35.80523 -34.68738 -33.41244 -32.19890 -31.69623 -28.08876 -27.83200 -27.07301 -26.39050 -23.92686 -23.49178 -21.76723 -20.57707 -19.58633 -18.96437 -17.91326 -17.57838 -17.07868 -16.77131 -16.50061 -16.04830 -15.68621 -15.17893 -14.92256 -14.50808 -14.45207 -14.23002 -13.85888 -13.67770 -13.26886 -13.09792 -12.72563 -12.62281 -12.58177 -12.40533 -12.29550 -12.22303 -11.99689 -11.97090 -11.85284 -11.80526 -11.33451 -11.25497 -11.18835 -11.06541 -10.94482 -10.92727 -10.86934 -10.64174 -10.43855 -9.97015 -9.54745 -9.25397 -8.97891 -8.41794 -6.06587 -4.09862 0.33272 1.80316 2.26267 2.70114 3.29922 3.36045 3.40059 3.71372 3.94015 3.99471 4.29581 4.35602 4.41692 4.53359 4.70021 4.75410 4.82639 4.88186 5.05180 5.06089 5.15187 5.16334 5.21308 5.26763 5.29833 5.36605 5.39397 5.41777 5.49464 5.61578 5.75121 5.78579 5.82431 5.88746 6.00240 6.01837 6.11343 6.27515 6.42471 6.85082 7.35835 7.55633 7.65290 7.91243 8.31441 8.96382 9.54987 11.04617 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.018989 B = 0.002591 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.212990 B =10805.520371 C =11290.600616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.353 6.353 3 C 0.479 3.521 4 O -0.499 6.499 5 C -0.063 4.063 6 C -0.137 4.137 7 C 0.133 3.867 8 N -1.015 6.015 9 S 2.613 3.387 10 O -0.954 6.954 11 O -0.954 6.954 12 C -0.608 4.608 13 C -0.106 4.106 14 C 0.031 3.969 15 C -0.526 4.526 16 H 0.058 0.942 17 C 0.058 3.942 18 N -0.895 5.895 19 Si 0.894 3.106 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.272 1.272 23 C 0.123 3.877 24 C -0.081 4.081 25 H 0.100 0.900 26 C -0.145 4.145 27 H 0.064 0.936 28 H 0.103 0.897 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.072 0.928 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.020 0.980 40 H 0.021 0.979 41 H 0.262 0.738 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.064 0.936 45 H 0.065 0.935 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.805 -0.624 22.624 26.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.269 6.269 3 C 0.321 3.679 4 O -0.386 6.386 5 C -0.066 4.066 6 C -0.194 4.194 7 C 0.007 3.993 8 N -0.852 5.852 9 S 2.711 3.289 10 O -0.944 6.944 11 O -0.945 6.945 12 C -0.740 4.740 13 C -0.145 4.145 14 C -0.007 4.007 15 C -0.565 4.565 16 H 0.077 0.923 17 C -0.144 4.144 18 N -0.534 5.534 19 Si 0.722 3.278 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.197 1.197 23 C -0.003 4.003 24 C -0.100 4.100 25 H 0.118 0.882 26 C -0.202 4.202 27 H 0.083 0.917 28 H 0.121 0.879 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.091 0.909 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.039 0.961 40 H 0.039 0.961 41 H 0.071 0.929 42 H 0.098 0.902 43 H 0.092 0.908 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.341 -0.833 22.808 26.436 hybrid contribution -0.068 0.253 -1.287 1.313 sum -13.409 -0.581 21.521 25.363 Atomic orbital electron populations 1.23313 0.76105 1.03936 1.02609 1.86533 1.23534 1.33113 1.83753 1.23293 0.91074 0.81481 0.72049 1.90672 1.66784 1.36333 1.44813 1.21740 0.86996 0.98924 0.98919 1.21818 1.02217 1.00712 0.94652 1.21939 0.83804 0.98701 0.94888 1.58803 1.28214 1.31143 1.67026 1.05116 0.72337 0.74421 0.77004 1.93568 1.47634 1.78761 1.74463 1.93566 1.85027 1.28831 1.87081 1.30592 1.10028 1.12778 1.20591 1.21513 0.93522 1.00775 0.98736 1.19063 0.97540 0.96506 0.87638 1.21251 1.09449 1.31200 0.94572 0.92346 1.25021 0.96179 0.95021 0.98150 1.69957 1.33382 1.35909 1.14187 0.86552 0.82474 0.78529 0.80247 1.20551 1.21163 1.19728 1.21856 0.97289 0.85019 0.96099 1.22240 0.96151 0.92865 0.98779 0.88207 1.21832 1.02404 1.01163 0.94805 0.91704 0.87882 0.91899 0.90307 0.90796 0.91438 0.88171 0.90937 0.85414 0.85376 0.91546 0.91539 0.96119 0.96104 0.92880 0.90238 0.90781 0.91708 0.91632 0.91967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 101.05 1.07 1.28 16 2 O -0.35 -3.15 10.52 -39.26 -0.41 -3.56 16 3 C 0.48 4.72 6.64 36.01 0.24 4.96 16 4 O -0.50 -5.92 15.50 -18.75 -0.29 -6.21 16 5 C -0.06 -0.56 0.71 -153.51 -0.11 -0.67 16 6 C -0.14 -1.04 7.30 37.16 0.27 -0.77 16 7 C 0.13 1.33 5.99 -2.53 -0.02 1.31 16 8 N -1.02 -11.43 3.61 -111.42 -0.40 -11.83 16 9 S 2.61 38.16 5.65 -107.50 -0.61 37.56 16 10 O -0.95 -16.32 17.60 -57.54 -1.01 -17.33 16 11 O -0.95 -16.27 17.28 -57.54 -0.99 -17.26 16 12 C -0.61 -9.34 6.18 37.16 0.23 -9.12 16 13 C -0.11 -2.14 5.16 -26.73 -0.14 -2.28 16 14 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 15 C -0.53 -14.82 9.11 -34.44 -0.31 -15.13 16 16 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.90 -26.61 13.29 55.43 0.74 -25.87 16 19 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 23 C 0.12 1.16 6.11 -3.06 -0.02 1.14 16 24 C -0.08 -0.68 2.51 -88.78 -0.22 -0.91 16 25 H 0.10 0.91 7.44 -51.93 -0.39 0.52 16 26 C -0.14 -1.01 8.17 37.16 0.30 -0.71 16 27 H 0.06 0.42 8.13 -51.93 -0.42 -0.01 16 28 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 30 H 0.08 0.62 7.67 -51.93 -0.40 0.22 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.43 7.18 -51.93 -0.37 0.06 16 33 H 0.10 1.00 7.58 -51.93 -0.39 0.61 16 34 H 0.07 0.66 8.03 -51.93 -0.42 0.24 16 35 H 0.13 1.77 8.14 -51.93 -0.42 1.34 16 36 H 0.13 1.77 8.14 -51.92 -0.42 1.34 16 37 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.08 0.73 7.76 -51.93 -0.40 0.32 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.40 6.69 -51.93 -0.35 0.06 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 LS Contribution 387.42 15.07 5.84 5.84 Total: -1.00 -35.50 387.42 -8.87 -44.37 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -7.76 Total: -3.55 kcal Atomic # 6 Polarization: -19.75 SS G_CDS: 1.06 Total: -18.69 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: 0.33 Total: -37.70 kcal Atomic # 8 Polarization: -41.66 SS G_CDS: -2.71 Total: -44.37 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 38.16 SS G_CDS: -0.61 Total: 37.56 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.50 -8.87 -44.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601482909.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.632 kcal (2) G-P(sol) polarization free energy of solvation -35.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds