Wall clock time and date at job start Tue Mar 31 2020 17:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34230 * 117.00211 * 2 1 4 4 O 1.20827 * 119.99741 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99964 * 180.02562 * 3 2 1 6 6 C 1.52997 * 110.88614 * 300.69653 * 5 3 2 7 7 C 1.54905 * 111.00425 * 64.58018 * 5 3 2 8 8 N 1.47425 * 104.83200 * 155.11928 * 7 5 3 9 9 S 1.65596 * 125.65164 * 155.90502 * 8 7 5 10 10 O 1.42102 * 104.27762 * 206.07451 * 9 8 7 11 11 O 1.42105 * 104.27608 * 333.92948 * 9 8 7 12 12 C 1.81399 * 104.45018 * 90.00173 * 9 8 7 13 13 C 1.53002 * 109.47343 * 180.02562 * 12 9 8 14 14 C 1.52999 * 109.47045 * 180.02562 * 13 12 9 15 15 C 1.50710 * 109.46821 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99892 * 359.97438 * 15 14 13 17 17 C 1.37871 * 119.99519 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00642 * 359.97438 * 17 15 14 19 19 Si 1.86809 * 119.99658 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47101 * 89.99412 * 19 17 15 21 21 H 1.48498 * 109.46768 * 209.99801 * 19 17 15 22 22 H 1.48498 * 109.46928 * 329.99449 * 19 17 15 23 23 C 1.47029 * 108.70410 * 335.87168 * 8 7 5 24 24 C 1.54322 * 107.26741 * 1.05858 * 23 8 7 25 25 H 1.09004 * 110.72128 * 263.82683 * 24 23 8 26 26 C 1.53003 * 110.71992 * 140.55970 * 24 23 8 27 27 H 1.09003 * 109.47293 * 60.00683 * 1 2 3 28 28 H 1.09006 * 109.46933 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47243 * 299.99860 * 1 2 3 30 30 H 1.09002 * 109.47153 * 182.42934 * 6 5 3 31 31 H 1.09001 * 109.46832 * 62.43125 * 6 5 3 32 32 H 1.09004 * 109.47261 * 302.43106 * 6 5 3 33 33 H 1.08991 * 110.36949 * 273.95576 * 7 5 3 34 34 H 1.08998 * 110.36797 * 36.17204 * 7 5 3 35 35 H 1.08998 * 109.47056 * 299.99928 * 12 9 8 36 36 H 1.09005 * 109.47003 * 60.00072 * 12 9 8 37 37 H 1.08998 * 109.46781 * 299.99845 * 13 12 9 38 38 H 1.08995 * 109.46848 * 59.99541 * 13 12 9 39 39 H 1.08998 * 109.47166 * 299.99562 * 14 13 12 40 40 H 1.08995 * 109.47189 * 59.99952 * 14 13 12 41 41 H 0.97000 * 120.00228 * 180.02562 * 18 17 15 42 42 H 1.08998 * 109.88255 * 120.47593 * 23 8 7 43 43 H 1.08998 * 109.88228 * 241.48632 * 23 8 7 44 44 H 1.09004 * 109.46798 * 306.46845 * 26 24 23 45 45 H 1.08996 * 109.47472 * 66.47502 * 26 24 23 46 46 H 1.09008 * 109.46796 * 186.47985 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.1497 0.5743 1.2282 7 6 4.1528 0.6842 -1.3071 8 7 5.4623 1.3428 -1.4645 9 16 6.7490 0.7415 -2.3160 10 8 7.8840 1.3381 -1.7036 11 8 6.5584 -0.6665 -2.2910 12 6 6.5203 1.3852 -3.9964 13 6 7.6600 0.8928 -4.8907 14 6 7.4674 1.4362 -6.3079 15 6 8.5903 0.9517 -7.1885 16 1 9.3641 0.3198 -6.7783 17 6 8.6303 1.3161 -8.5176 18 7 7.6882 2.0860 -9.0171 19 14 10.0218 0.7150 -9.6094 20 1 9.6394 -0.5778 -10.2319 21 1 10.2852 1.7177 -10.6726 22 1 11.2469 0.5274 -8.7915 23 6 5.4364 2.6225 -0.7409 24 6 4.0468 2.7479 -0.0814 25 1 3.3759 3.3387 -0.7050 26 6 4.1644 3.3565 1.3174 27 1 -0.3634 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 5.2344 0.6822 1.2272 31 1 3.8898 -0.4839 1.2007 32 1 3.7405 1.0256 2.1321 33 1 4.2795 -0.3942 -1.2125 34 1 3.5053 0.9166 -2.1525 35 1 5.5687 1.0326 -4.3941 36 1 6.5224 2.4749 -3.9715 37 1 8.6118 1.2450 -4.4931 38 1 7.6575 -0.1969 -4.9154 39 1 6.5155 1.0844 -6.7057 40 1 7.4701 2.5259 -6.2827 41 1 7.7162 2.3420 -9.9523 42 1 6.2122 2.6312 0.0246 43 1 5.5942 3.4456 -1.4378 44 1 4.8828 2.7835 1.9037 45 1 4.5027 4.3895 1.2369 46 1 3.1914 3.3299 1.8081 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601482909.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:34 Heat of formation + Delta-G solvation = -193.716088 kcal Electronic energy + Delta-G solvation = -27587.638273 eV Core-core repulsion = 23603.247058 eV Total energy + Delta-G solvation = -3984.391215 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.05225 -39.87938 -38.25137 -37.50772 -37.09499 -36.48195 -34.21151 -34.17563 -32.36260 -29.67491 -28.63240 -27.77595 -27.09411 -25.63823 -24.45881 -22.55884 -22.24770 -20.29756 -20.05144 -18.88715 -18.65096 -18.34553 -17.81716 -17.52451 -17.15301 -17.00555 -16.50328 -16.11017 -15.71417 -15.59110 -15.03298 -14.72861 -14.50385 -14.35419 -14.07719 -13.96159 -13.85848 -13.54368 -13.45604 -13.36459 -13.21752 -13.07668 -13.00328 -12.99336 -12.82216 -12.76606 -12.74549 -12.63954 -12.18148 -12.01297 -11.85216 -11.76795 -11.73133 -11.59630 -11.41170 -11.38388 -11.11152 -10.58546 -10.02640 -8.23518 -6.34801 -0.86397 1.04430 1.39968 1.40763 1.50477 1.52226 1.75587 2.39269 2.75158 2.88718 3.10103 3.22648 3.32351 3.67981 3.72637 3.86553 3.88401 4.03941 4.18397 4.30581 4.34688 4.36270 4.40751 4.46121 4.60450 4.61191 4.66340 4.71406 4.74470 4.80994 4.85625 4.92892 4.99824 5.03006 5.08674 5.13906 5.18234 5.31946 5.34904 5.42729 5.44146 5.61095 5.78222 6.18287 6.63709 6.80970 7.34773 8.88030 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.018989 B = 0.002591 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.212990 B =10805.520371 C =11290.600616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.359 6.359 3 C 0.483 3.517 4 O -0.523 6.523 5 C -0.061 4.061 6 C -0.137 4.137 7 C 0.124 3.876 8 N -1.010 6.010 9 S 2.644 3.356 10 O -0.977 6.977 11 O -0.978 6.978 12 C -0.611 4.611 13 C -0.106 4.106 14 C 0.031 3.969 15 C -0.552 4.552 16 H 0.061 0.939 17 C 0.002 3.998 18 N -0.931 5.931 19 Si 0.963 3.037 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.264 1.264 23 C 0.114 3.886 24 C -0.076 4.076 25 H 0.093 0.907 26 C -0.142 4.142 27 H 0.061 0.939 28 H 0.129 0.871 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.142 0.858 36 H 0.144 0.856 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.002 0.998 40 H 0.002 0.998 41 H 0.265 0.735 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.850 -0.979 23.660 27.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.274 6.274 3 C 0.326 3.674 4 O -0.411 6.411 5 C -0.064 4.064 6 C -0.194 4.194 7 C -0.001 4.001 8 N -0.848 5.848 9 S 2.742 3.258 10 O -0.968 6.968 11 O -0.969 6.969 12 C -0.742 4.742 13 C -0.145 4.145 14 C -0.007 4.007 15 C -0.590 4.590 16 H 0.080 0.920 17 C -0.196 4.196 18 N -0.571 5.571 19 Si 0.788 3.212 20 H -0.197 1.197 21 H -0.206 1.206 22 H -0.188 1.188 23 C -0.010 4.010 24 C -0.096 4.096 25 H 0.112 0.888 26 C -0.199 4.199 27 H 0.080 0.920 28 H 0.147 0.853 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.118 0.882 34 H 0.099 0.901 35 H 0.160 0.840 36 H 0.162 0.838 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.020 0.980 40 H 0.021 0.979 41 H 0.074 0.926 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.379 -1.203 23.840 27.365 hybrid contribution -0.166 0.369 -1.564 1.616 sum -13.545 -0.834 22.276 26.084 Atomic orbital electron populations 1.23574 0.74684 1.05741 1.02624 1.86527 1.24992 1.32577 1.83342 1.23404 0.91308 0.81392 0.71346 1.90663 1.67331 1.37084 1.46052 1.21759 0.86561 0.99266 0.98833 1.21850 1.02056 1.00923 0.94553 1.22123 0.83191 0.98749 0.96049 1.58437 1.28057 1.32077 1.66229 1.03941 0.72170 0.73457 0.76245 1.93534 1.49390 1.79088 1.74738 1.93531 1.85564 1.30499 1.87279 1.30577 1.08793 1.13949 1.20867 1.21320 0.95651 1.00807 0.96766 1.18959 0.95894 0.95341 0.90520 1.21743 1.10344 1.31365 0.95564 0.92046 1.25948 0.98811 0.95088 0.99759 1.70073 1.35247 1.37025 1.14722 0.85469 0.79324 0.78201 0.78232 1.19680 1.20567 1.18808 1.22111 0.98130 0.84313 0.96495 1.22217 0.95216 0.92636 0.99517 0.88823 1.21825 1.02512 1.01773 0.93801 0.92033 0.85258 0.91585 0.90449 0.90482 0.90135 0.88182 0.90064 0.83952 0.83793 0.91398 0.91403 0.97986 0.97939 0.92627 0.89658 0.89608 0.90768 0.90743 0.92322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 113.37 1.20 1.49 16 2 O -0.36 -5.90 10.52 -51.42 -0.54 -6.44 16 3 C 0.48 8.93 6.64 71.24 0.47 9.40 16 4 O -0.52 -11.93 15.50 21.96 0.34 -11.59 16 5 C -0.06 -1.00 0.71 -51.54 -0.04 -1.04 16 6 C -0.14 -1.84 7.30 71.98 0.53 -1.31 16 7 C 0.12 2.32 5.99 86.85 0.52 2.84 16 8 N -1.01 -21.27 3.61 -506.43 -1.83 -23.10 16 9 S 2.64 74.53 5.65 -56.49 -0.32 74.21 16 10 O -0.98 -32.40 17.60 -127.65 -2.25 -34.65 16 11 O -0.98 -32.50 17.28 -127.65 -2.21 -34.70 16 12 C -0.61 -18.36 6.18 71.98 0.44 -17.91 16 13 C -0.11 -4.30 5.16 30.59 0.16 -4.14 16 14 C 0.03 1.61 4.97 29.85 0.15 1.76 16 15 C -0.55 -31.42 9.11 25.60 0.23 -31.19 16 16 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 17 C 0.00 0.12 5.46 84.65 0.46 0.58 16 18 N -0.93 -55.99 13.29 21.45 0.28 -55.70 16 19 Si 0.96 44.16 29.54 68.60 2.03 46.19 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 22 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 23 C 0.11 1.96 6.11 86.73 0.53 2.49 16 24 C -0.08 -1.17 2.51 -9.60 -0.02 -1.19 16 25 H 0.09 1.58 7.44 -2.38 -0.02 1.56 16 26 C -0.14 -1.71 8.17 71.98 0.59 -1.12 16 27 H 0.06 0.73 8.13 -2.39 -0.02 0.71 16 28 H 0.13 0.71 8.14 -2.38 -0.02 0.69 16 29 H 0.07 0.70 8.13 -2.39 -0.02 0.68 16 30 H 0.08 1.08 7.67 -2.39 -0.02 1.06 16 31 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.08 0.86 7.18 -2.38 -0.02 0.85 16 33 H 0.10 1.88 7.58 -2.39 -0.02 1.86 16 34 H 0.08 1.37 8.03 -2.39 -0.02 1.35 16 35 H 0.14 3.82 8.14 -2.39 -0.02 3.80 16 36 H 0.14 3.83 8.14 -2.39 -0.02 3.81 16 37 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 38 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 39 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 40 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 41 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 42 H 0.09 1.39 7.76 -2.39 -0.02 1.38 16 43 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.07 0.76 6.69 -2.38 -0.02 0.74 16 45 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 Total: -1.00 -75.61 387.42 1.68 -73.93 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: 0.95 Total: 11.19 kcal Atomic # 6 Polarization: -44.56 SS G_CDS: 5.22 Total: -39.35 kcal Atomic # 7 Polarization: -77.26 SS G_CDS: -1.54 Total: -78.80 kcal Atomic # 8 Polarization: -82.73 SS G_CDS: -4.65 Total: -87.38 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 16 Polarization: 74.53 SS G_CDS: -0.32 Total: 74.21 kcal Total: -75.61 1.68 -73.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601482909.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.782 kcal (2) G-P(sol) polarization free energy of solvation -75.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds