Wall clock time and date at job start Tue Mar 31 2020 18:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34235 * 117.00035 * 2 1 4 4 O 1.20830 * 119.99889 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00086 * 180.02562 * 3 2 1 6 6 H 1.08996 * 109.51051 * 55.09922 * 5 3 2 7 7 C 1.53297 * 109.51193 * 294.99429 * 5 3 2 8 8 N 1.47148 * 108.38262 * 187.77388 * 7 5 3 9 9 C 1.34783 * 120.98029 * 230.55683 * 8 7 5 10 10 O 1.21607 * 120.00078 * 174.64816 * 9 8 7 11 11 C 1.47437 * 120.00112 * 354.64912 * 9 8 7 12 12 C 1.39223 * 120.27725 * 311.94226 * 11 9 8 13 13 C 1.38224 * 120.08702 * 179.97438 * 12 11 9 14 14 C 1.38827 * 120.67452 * 0.02562 * 13 12 11 15 15 C 1.37596 * 120.57398 * 359.97438 * 14 13 12 16 16 C 1.40703 * 119.87737 * 359.73789 * 15 14 13 17 17 C 1.40896 * 120.32615 * 180.25620 * 16 15 14 18 18 H 1.08007 * 119.99593 * 151.76601 * 17 16 15 19 19 C 1.40272 * 120.00300 * 331.76642 * 17 16 15 20 20 N 1.30631 * 119.99797 * 349.25804 * 19 17 16 21 21 Si 1.86794 * 120.00091 * 169.25927 * 19 17 16 22 22 H 1.48494 * 109.47182 * 60.00052 * 21 19 17 23 23 H 1.48504 * 109.46791 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47362 * 299.99724 * 21 19 17 25 25 C 1.47148 * 118.03519 * 50.54183 * 8 7 5 26 26 C 1.53297 * 108.38424 * 309.45598 * 25 8 7 27 27 H 1.08992 * 109.51864 * 292.38656 * 26 25 8 28 28 C 1.53000 * 109.51269 * 172.27947 * 26 25 8 29 29 O 1.42964 * 109.51039 * 175.25122 * 5 3 2 30 30 H 1.08997 * 109.47080 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47071 * 300.00260 * 1 2 3 32 32 H 1.08999 * 109.47518 * 60.00388 * 1 2 3 33 33 H 1.09007 * 109.67660 * 68.05204 * 7 5 3 34 34 H 1.08997 * 109.68071 * 307.50531 * 7 5 3 35 35 H 1.07996 * 119.95934 * 359.97438 * 12 11 9 36 36 H 1.07998 * 119.66076 * 179.97438 * 13 12 11 37 37 H 1.08002 * 119.71301 * 179.97438 * 14 13 12 38 38 H 1.08003 * 120.06293 * 180.02562 * 15 14 13 39 39 H 0.96998 * 120.00433 * 179.97438 * 20 19 17 40 40 H 1.09004 * 109.68074 * 189.74009 * 25 8 7 41 41 H 1.08997 * 109.68570 * 69.18682 * 25 8 7 42 42 H 1.08999 * 109.47217 * 60.10650 * 28 26 25 43 43 H 1.08999 * 109.47000 * 180.11043 * 28 26 25 44 44 H 1.09007 * 109.46974 * 300.10588 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9603 0.7071 -0.8435 7 6 4.1101 0.6918 1.3087 8 7 5.5577 0.9495 1.3656 9 6 6.4292 -0.0432 1.6333 10 8 7.6257 0.1673 1.5804 11 6 5.9318 -1.3844 1.9905 12 6 4.9361 -1.5306 2.9525 13 6 4.4723 -2.7899 3.2839 14 6 4.9899 -3.9204 2.6664 15 6 5.9745 -3.8077 1.7119 16 6 6.4597 -2.5370 1.3521 17 6 7.4640 -2.4103 0.3720 18 1 7.5242 -1.5133 -0.2266 19 6 8.3856 -3.4491 0.1737 20 7 8.4500 -4.4367 1.0263 21 14 9.5206 -3.4201 -1.3096 22 1 10.3623 -2.1975 -1.2650 23 1 10.3928 -4.6219 -1.2889 24 1 8.7097 -3.4177 -2.5536 25 6 6.0258 2.3230 1.1212 26 6 5.3887 2.8267 -0.1790 27 1 5.7900 2.2651 -1.0225 28 6 5.7023 4.3133 -0.3592 29 8 3.9728 2.6410 -0.1120 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 3.9271 -0.3825 1.3360 34 1 3.6184 1.1700 2.1557 35 1 4.5255 -0.6591 3.4405 36 1 3.7001 -2.8953 4.0315 37 1 4.6164 -4.8968 2.9376 38 1 6.3709 -4.6928 1.2365 39 1 9.0869 -5.1552 0.8890 40 1 7.1115 2.3290 1.0243 41 1 5.7271 2.9655 1.9494 42 1 6.7821 4.4536 -0.4079 43 1 5.2474 4.6712 -1.2828 44 1 5.3006 4.8743 0.4847 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601654699.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:30 Heat of formation + Delta-G solvation = -132.253769 kcal Electronic energy + Delta-G solvation = -29740.131374 eV Core-core repulsion = 25622.961414 eV Total energy + Delta-G solvation = -4117.169960 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.82937 -39.74907 -38.28897 -36.82971 -36.42598 -34.46360 -33.71922 -33.21413 -30.19088 -29.70214 -29.51908 -27.52600 -26.47094 -25.30928 -24.38909 -22.27678 -21.38612 -20.96504 -20.69500 -18.86788 -17.69865 -17.43106 -17.15132 -16.61303 -16.50494 -16.15824 -15.62037 -15.49264 -15.12302 -14.60444 -14.35130 -14.07606 -13.88895 -13.40142 -13.23982 -12.92240 -12.79595 -12.59104 -12.54047 -12.34075 -12.21585 -12.01796 -11.90816 -11.65625 -11.38334 -11.22199 -11.15158 -10.91006 -10.88669 -10.87452 -10.54426 -10.33695 -10.09853 -10.01602 -9.73102 -9.32467 -8.82067 -8.22238 -7.59847 -7.51607 -6.86750 -4.50658 2.04999 2.22433 2.39986 2.76396 3.02398 3.06386 3.17513 3.29428 3.77677 3.84788 3.87689 4.52793 4.56324 4.67180 4.82644 4.97903 5.00398 5.05893 5.08566 5.15363 5.39121 5.42744 5.47740 5.52684 5.66040 5.72840 5.80821 5.91889 5.96192 6.03873 6.08519 6.21345 6.28259 6.48161 6.84846 6.91155 6.93877 7.04548 7.15694 7.38223 7.61120 7.66160 7.75509 7.91078 7.97759 8.12220 8.47458 8.70921 8.77711 9.05695 10.05457 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.010712 B = 0.004596 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.221138 B = 6090.389940 C = 7302.429139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.348 6.348 3 C 0.474 3.526 4 O -0.488 6.488 5 C 0.088 3.912 6 H 0.104 0.896 7 C 0.094 3.906 8 N -0.627 5.627 9 C 0.587 3.413 10 O -0.531 6.531 11 C -0.261 4.261 12 C -0.061 4.061 13 C -0.243 4.243 14 C -0.093 4.093 15 C -0.153 4.153 16 C 0.146 3.854 17 C -0.428 4.428 18 H 0.080 0.920 19 C 0.076 3.924 20 N -0.786 5.786 21 Si 0.914 3.086 22 H -0.262 1.262 23 H -0.276 1.276 24 H -0.263 1.263 25 C 0.082 3.918 26 C 0.075 3.925 27 H 0.069 0.931 28 C -0.140 4.140 29 O -0.358 6.358 30 H 0.105 0.895 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.123 0.877 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.125 0.875 39 H 0.284 0.716 40 H 0.103 0.897 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.537 7.477 -3.091 12.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.265 6.265 3 C 0.315 3.685 4 O -0.374 6.374 5 C 0.028 3.972 6 H 0.122 0.878 7 C -0.031 4.031 8 N -0.363 5.363 9 C 0.381 3.619 10 O -0.406 6.406 11 C -0.266 4.266 12 C -0.079 4.079 13 C -0.263 4.263 14 C -0.112 4.112 15 C -0.172 4.172 16 C 0.143 3.857 17 C -0.456 4.456 18 H 0.098 0.902 19 C -0.144 4.144 20 N -0.410 5.410 21 Si 0.738 3.262 22 H -0.186 1.186 23 H -0.201 1.201 24 H -0.187 1.187 25 C -0.041 4.041 26 C 0.017 3.983 27 H 0.087 0.913 28 C -0.197 4.197 29 O -0.277 6.277 30 H 0.123 0.877 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.141 0.859 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.143 0.857 39 H 0.095 0.905 40 H 0.122 0.878 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.060 7.806 -3.060 12.345 hybrid contribution 0.400 -0.163 -0.465 0.634 sum -8.660 7.643 -3.525 12.077 Atomic orbital electron populations 1.23313 0.75796 1.04029 1.02508 1.86542 1.23657 1.32288 1.83963 1.22985 0.90727 0.81784 0.72985 1.90670 1.66607 1.36296 1.43832 1.21779 0.87991 0.86132 1.01326 0.87841 1.22255 0.81900 1.04169 0.94747 1.48229 1.05920 1.08526 1.73636 1.18618 0.85087 0.83789 0.74407 1.90693 1.15562 1.82498 1.51883 1.19333 1.08176 0.91524 1.07546 1.20600 0.94869 0.96135 0.96321 1.20271 1.06430 0.92649 1.06926 1.20815 0.96938 0.96487 0.96960 1.21429 0.97374 0.98146 1.00299 1.17371 0.89365 0.89645 0.89361 1.19593 1.09171 1.01422 1.15404 0.90238 1.25990 0.97677 0.93960 0.96745 1.69683 1.30840 1.08535 1.31981 0.86256 0.79822 0.78847 0.81300 1.18646 1.20130 1.18710 1.22226 1.01748 0.83319 0.96778 1.22625 0.80109 0.97973 0.97552 0.91332 1.21706 1.02003 0.92860 1.03158 1.87953 1.22938 1.22164 1.94690 0.87654 0.91752 0.91896 0.85885 0.91009 0.89084 0.89050 0.89055 0.85688 0.90454 0.87832 0.91251 0.90394 0.91483 0.91487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.42 16 2 O -0.35 -4.56 10.56 -39.27 -0.41 -4.97 16 3 C 0.47 6.94 7.29 36.01 0.26 7.20 16 4 O -0.49 -8.16 16.26 -25.46 -0.41 -8.57 16 5 C 0.09 1.29 3.30 -27.73 -0.09 1.20 16 6 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 7 C 0.09 1.47 4.64 -3.53 -0.02 1.45 16 8 N -0.63 -11.22 3.02 -173.54 -0.52 -11.75 16 9 C 0.59 13.19 6.55 -12.51 -0.08 13.11 16 10 O -0.53 -13.60 15.23 5.27 0.08 -13.52 16 11 C -0.26 -6.12 4.88 -104.37 -0.51 -6.63 16 12 C -0.06 -1.26 7.59 -39.22 -0.30 -1.56 16 13 C -0.24 -4.99 10.03 -39.37 -0.39 -5.38 16 14 C -0.09 -2.02 10.01 -39.60 -0.40 -2.42 16 15 C -0.15 -3.74 8.66 -38.89 -0.34 -4.08 16 16 C 0.15 3.75 5.58 -106.54 -0.59 3.15 16 17 C -0.43 -11.19 7.90 -37.81 -0.30 -11.49 16 18 H 0.08 2.11 6.99 -52.48 -0.37 1.74 16 19 C 0.08 1.87 5.26 -17.30 -0.09 1.78 16 20 N -0.79 -19.69 10.80 55.56 0.60 -19.09 16 21 Si 0.91 18.72 29.58 -169.99 -5.03 13.69 16 22 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 23 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 24 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 25 C 0.08 1.24 5.94 -3.53 -0.02 1.22 16 26 C 0.08 1.01 3.40 -26.58 -0.09 0.92 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 28 C -0.14 -1.44 9.57 37.16 0.36 -1.08 16 29 O -0.36 -5.39 9.57 -55.11 -0.53 -5.92 16 30 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 32 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 33 H 0.12 2.06 5.34 -51.93 -0.28 1.78 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.09 1.68 7.29 -52.49 -0.38 1.29 16 36 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 37 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 38 H 0.13 3.13 6.18 -52.48 -0.32 2.81 16 39 H 0.28 6.48 8.29 -40.82 -0.34 6.14 16 40 H 0.10 1.65 7.06 -51.93 -0.37 1.28 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 LS Contribution 366.14 15.07 5.52 5.52 Total: -1.00 -30.98 366.14 -8.17 -39.15 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -5.92 Total: 6.64 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -1.54 Total: -1.18 kcal Atomic # 7 Polarization: -30.92 SS G_CDS: 0.08 Total: -30.84 kcal Atomic # 8 Polarization: -31.70 SS G_CDS: -1.28 Total: -32.98 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.98 -8.17 -39.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601654699.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.107 kcal (2) G-P(sol) polarization free energy of solvation -30.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds