Wall clock time and date at job start Tue Mar 31 2020 18:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34235 * 117.00035 * 2 1 4 4 O 1.20830 * 119.99889 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00086 * 180.02562 * 3 2 1 6 6 H 1.08996 * 109.51051 * 55.09922 * 5 3 2 7 7 C 1.53297 * 109.51193 * 294.99429 * 5 3 2 8 8 N 1.47148 * 108.38262 * 187.77388 * 7 5 3 9 9 C 1.34783 * 120.98029 * 230.55683 * 8 7 5 10 10 O 1.21607 * 120.00078 * 174.64816 * 9 8 7 11 11 C 1.47437 * 120.00112 * 354.64912 * 9 8 7 12 12 C 1.39223 * 120.27725 * 311.94226 * 11 9 8 13 13 C 1.38224 * 120.08702 * 179.97438 * 12 11 9 14 14 C 1.38827 * 120.67452 * 0.02562 * 13 12 11 15 15 C 1.37596 * 120.57398 * 359.97438 * 14 13 12 16 16 C 1.40703 * 119.87737 * 359.73789 * 15 14 13 17 17 C 1.40896 * 120.32615 * 180.25620 * 16 15 14 18 18 H 1.08007 * 119.99593 * 151.76601 * 17 16 15 19 19 C 1.40272 * 120.00300 * 331.76642 * 17 16 15 20 20 N 1.30631 * 119.99797 * 349.25804 * 19 17 16 21 21 Si 1.86794 * 120.00091 * 169.25927 * 19 17 16 22 22 H 1.48494 * 109.47182 * 60.00052 * 21 19 17 23 23 H 1.48504 * 109.46791 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47362 * 299.99724 * 21 19 17 25 25 C 1.47148 * 118.03519 * 50.54183 * 8 7 5 26 26 C 1.53297 * 108.38424 * 309.45598 * 25 8 7 27 27 H 1.08992 * 109.51864 * 292.38656 * 26 25 8 28 28 C 1.53000 * 109.51269 * 172.27947 * 26 25 8 29 29 O 1.42964 * 109.51039 * 175.25122 * 5 3 2 30 30 H 1.08997 * 109.47080 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47071 * 300.00260 * 1 2 3 32 32 H 1.08999 * 109.47518 * 60.00388 * 1 2 3 33 33 H 1.09007 * 109.67660 * 68.05204 * 7 5 3 34 34 H 1.08997 * 109.68071 * 307.50531 * 7 5 3 35 35 H 1.07996 * 119.95934 * 359.97438 * 12 11 9 36 36 H 1.07998 * 119.66076 * 179.97438 * 13 12 11 37 37 H 1.08002 * 119.71301 * 179.97438 * 14 13 12 38 38 H 1.08003 * 120.06293 * 180.02562 * 15 14 13 39 39 H 0.96998 * 120.00433 * 179.97438 * 20 19 17 40 40 H 1.09004 * 109.68074 * 189.74009 * 25 8 7 41 41 H 1.08997 * 109.68570 * 69.18682 * 25 8 7 42 42 H 1.08999 * 109.47217 * 60.10650 * 28 26 25 43 43 H 1.08999 * 109.47000 * 180.11043 * 28 26 25 44 44 H 1.09007 * 109.46974 * 300.10588 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9603 0.7071 -0.8435 7 6 4.1101 0.6918 1.3087 8 7 5.5577 0.9495 1.3656 9 6 6.4292 -0.0432 1.6333 10 8 7.6257 0.1673 1.5804 11 6 5.9318 -1.3844 1.9905 12 6 4.9361 -1.5306 2.9525 13 6 4.4723 -2.7899 3.2839 14 6 4.9899 -3.9204 2.6664 15 6 5.9745 -3.8077 1.7119 16 6 6.4597 -2.5370 1.3521 17 6 7.4640 -2.4103 0.3720 18 1 7.5242 -1.5133 -0.2266 19 6 8.3856 -3.4491 0.1737 20 7 8.4500 -4.4367 1.0263 21 14 9.5206 -3.4201 -1.3096 22 1 10.3623 -2.1975 -1.2650 23 1 10.3928 -4.6219 -1.2889 24 1 8.7097 -3.4177 -2.5536 25 6 6.0258 2.3230 1.1212 26 6 5.3887 2.8267 -0.1790 27 1 5.7900 2.2651 -1.0225 28 6 5.7023 4.3133 -0.3592 29 8 3.9728 2.6410 -0.1120 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 3.9271 -0.3825 1.3360 34 1 3.6184 1.1700 2.1557 35 1 4.5255 -0.6591 3.4405 36 1 3.7001 -2.8953 4.0315 37 1 4.6164 -4.8968 2.9376 38 1 6.3709 -4.6928 1.2365 39 1 9.0869 -5.1552 0.8890 40 1 7.1115 2.3290 1.0243 41 1 5.7271 2.9655 1.9494 42 1 6.7821 4.4536 -0.4079 43 1 5.2474 4.6712 -1.2828 44 1 5.3006 4.8743 0.4847 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601654699.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:29 Heat of formation + Delta-G solvation = -149.862685 kcal Electronic energy + Delta-G solvation = -29740.894954 eV Core-core repulsion = 25622.961414 eV Total energy + Delta-G solvation = -4117.933540 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.03718 -41.12575 -39.74699 -38.52485 -37.56534 -36.01240 -35.45481 -34.34044 -31.93349 -31.40065 -30.69451 -28.44548 -27.89040 -26.96168 -25.66642 -23.77221 -22.85710 -22.43378 -21.92142 -20.43764 -19.18549 -18.81919 -18.46461 -17.91651 -17.82744 -17.38624 -17.11462 -16.94258 -16.45958 -16.16632 -15.93026 -15.43344 -15.10072 -14.96703 -14.49268 -14.31366 -14.24314 -14.07799 -13.77448 -13.56099 -13.50486 -13.18078 -13.17217 -12.96167 -12.92563 -12.80707 -12.57100 -12.46124 -12.21696 -12.02771 -11.84625 -11.82994 -11.57625 -11.47628 -11.30235 -11.11881 -10.56624 -9.69247 -9.34228 -9.30984 -8.67160 -6.40259 0.63093 0.89018 1.02947 1.18556 1.33887 1.44618 1.51022 1.84206 2.08865 2.18229 2.72382 2.75834 3.37718 3.53146 3.65917 3.67649 3.79735 3.94771 4.04529 4.17798 4.25977 4.30590 4.35978 4.38950 4.50505 4.53562 4.63657 4.72656 4.73226 4.80420 4.87075 4.94286 5.08189 5.18308 5.21974 5.25198 5.35275 5.45415 5.60402 5.81255 5.87093 5.99422 6.12436 6.25062 6.38556 6.56352 6.63999 6.86255 6.94702 7.35614 8.27161 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.010712 B = 0.004596 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.221138 B = 6090.389940 C = 7302.429139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.354 6.354 3 C 0.483 3.517 4 O -0.511 6.511 5 C 0.089 3.911 6 H 0.105 0.895 7 C 0.096 3.904 8 N -0.620 5.620 9 C 0.585 3.415 10 O -0.575 6.575 11 C -0.274 4.274 12 C -0.058 4.058 13 C -0.232 4.232 14 C -0.091 4.091 15 C -0.179 4.179 16 C 0.117 3.883 17 C -0.464 4.464 18 H 0.060 0.940 19 C 0.037 3.963 20 N -0.816 5.816 21 Si 0.975 3.025 22 H -0.273 1.273 23 H -0.259 1.259 24 H -0.254 1.254 25 C 0.079 3.921 26 C 0.077 3.923 27 H 0.062 0.938 28 C -0.133 4.133 29 O -0.364 6.364 30 H 0.134 0.866 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.114 0.886 34 H 0.090 0.910 35 H 0.120 0.880 36 H 0.130 0.870 37 H 0.119 0.881 38 H 0.110 0.890 39 H 0.291 0.709 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.074 0.926 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.339 8.114 -2.666 14.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.271 6.271 3 C 0.325 3.675 4 O -0.398 6.398 5 C 0.029 3.971 6 H 0.122 0.878 7 C -0.028 4.028 8 N -0.354 5.354 9 C 0.378 3.622 10 O -0.454 6.454 11 C -0.278 4.278 12 C -0.077 4.077 13 C -0.251 4.251 14 C -0.109 4.109 15 C -0.198 4.198 16 C 0.114 3.886 17 C -0.493 4.493 18 H 0.078 0.922 19 C -0.179 4.179 20 N -0.441 5.441 21 Si 0.796 3.204 22 H -0.198 1.198 23 H -0.183 1.183 24 H -0.178 1.178 25 C -0.043 4.043 26 C 0.019 3.981 27 H 0.080 0.920 28 C -0.191 4.191 29 O -0.284 6.284 30 H 0.152 0.848 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.132 0.868 34 H 0.108 0.892 35 H 0.137 0.863 36 H 0.148 0.852 37 H 0.137 0.863 38 H 0.127 0.873 39 H 0.102 0.898 40 H 0.110 0.890 41 H 0.107 0.893 42 H 0.112 0.888 43 H 0.093 0.907 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.922 8.447 -2.635 14.057 hybrid contribution 0.758 -0.319 -0.475 0.949 sum -10.165 8.128 -3.109 13.381 Atomic orbital electron populations 1.23673 0.73609 1.06120 1.03042 1.86533 1.25806 1.31316 1.83395 1.22818 0.90409 0.81910 0.72393 1.90660 1.66992 1.37074 1.45097 1.21731 0.88504 0.86176 1.00722 0.87795 1.22319 0.80421 1.03902 0.96129 1.48127 1.06492 1.08812 1.71978 1.18573 0.84910 0.84411 0.74308 1.90659 1.17405 1.83305 1.54049 1.19620 1.08576 0.91670 1.07956 1.20902 0.93868 0.97627 0.95265 1.20727 1.06128 0.91812 1.06393 1.21156 0.95651 0.98474 0.95631 1.21388 0.99070 0.97301 1.02056 1.17706 0.89881 0.90987 0.90055 1.19614 1.11072 1.01687 1.16942 0.92172 1.26688 0.98659 0.93427 0.99090 1.69717 1.31933 1.09231 1.33249 0.85356 0.77978 0.78743 0.78313 1.19804 1.18310 1.17804 1.22447 1.01338 0.81897 0.98585 1.22736 0.79231 0.99978 0.96135 0.91993 1.21722 1.03218 0.90318 1.03816 1.87971 1.23703 1.22113 1.94579 0.84834 0.91248 0.91414 0.86846 0.89179 0.86259 0.85229 0.86274 0.87255 0.89813 0.88987 0.89314 0.88776 0.90702 0.90827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.56 113.37 1.20 1.66 16 2 O -0.35 -8.64 10.56 -51.46 -0.54 -9.18 16 3 C 0.48 13.42 7.29 71.24 0.52 13.94 16 4 O -0.51 -16.27 16.26 28.36 0.46 -15.81 16 5 C 0.09 2.52 3.30 29.95 0.10 2.62 16 6 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 7 C 0.10 2.87 4.64 86.36 0.40 3.28 16 8 N -0.62 -21.97 3.02 -821.20 -2.48 -24.45 16 9 C 0.58 26.76 6.55 86.67 0.57 27.33 16 10 O -0.57 -30.63 15.23 -4.05 -0.06 -30.69 16 11 C -0.27 -12.94 4.88 -19.70 -0.10 -13.03 16 12 C -0.06 -2.31 7.59 22.50 0.17 -2.14 16 13 C -0.23 -8.80 10.03 22.41 0.22 -8.57 16 14 C -0.09 -3.79 10.01 22.26 0.22 -3.57 16 15 C -0.18 -8.88 8.66 22.72 0.20 -8.68 16 16 C 0.12 6.20 5.58 -21.11 -0.12 6.08 16 17 C -0.46 -25.56 7.90 23.42 0.18 -25.37 16 18 H 0.06 3.41 6.99 -2.91 -0.02 3.39 16 19 C 0.04 1.91 5.26 85.37 0.45 2.36 16 20 N -0.82 -42.31 10.80 21.88 0.24 -42.07 16 21 Si 0.98 39.63 29.58 68.60 2.03 41.66 16 22 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 23 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 24 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 25 C 0.08 2.34 5.94 86.36 0.51 2.86 16 26 C 0.08 1.97 3.40 30.69 0.10 2.08 16 27 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 28 C -0.13 -2.47 9.57 71.98 0.69 -1.78 16 29 O -0.36 -10.45 9.57 -129.97 -1.24 -11.69 16 30 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.07 1.09 8.13 -2.39 -0.02 1.07 16 32 H 0.07 1.06 8.13 -2.39 -0.02 1.04 16 33 H 0.11 3.66 5.34 -2.38 -0.01 3.65 16 34 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.12 4.02 7.29 -2.91 -0.02 4.00 16 36 H 0.13 3.97 8.06 -2.91 -0.02 3.95 16 37 H 0.12 4.24 8.06 -2.91 -0.02 4.22 16 38 H 0.11 5.69 6.18 -2.91 -0.02 5.67 16 39 H 0.29 13.62 8.29 -92.71 -0.77 12.85 16 40 H 0.09 2.96 7.06 -2.38 -0.02 2.95 16 41 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 Total: -1.00 -69.40 366.14 4.74 -64.66 By element: Atomic # 1 Polarization: 27.51 SS G_CDS: 1.02 Total: 28.53 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: 5.32 Total: -0.96 kcal Atomic # 7 Polarization: -64.27 SS G_CDS: -2.24 Total: -66.52 kcal Atomic # 8 Polarization: -65.99 SS G_CDS: -1.39 Total: -67.38 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 2.03 Total: 41.66 kcal Total: -69.40 4.74 -64.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601654699.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.204 kcal (2) G-P(sol) polarization free energy of solvation -69.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds