Wall clock time and date at job start Tue Mar 31 2020 18:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46897 * 2 1 4 4 C 1.50693 * 109.46906 * 119.99479 * 2 1 3 5 5 O 1.21290 * 120.00194 * 120.00279 * 4 2 1 6 6 N 1.34781 * 120.00114 * 299.72933 * 4 2 1 7 7 C 1.39925 * 119.99920 * 175.36906 * 6 4 2 8 8 C 1.38904 * 120.05613 * 214.79816 * 7 6 4 9 9 C 1.38100 * 119.97879 * 179.68254 * 8 7 6 10 10 C 1.38267 * 120.09374 * 0.61181 * 9 8 7 11 11 C 1.38485 * 120.11718 * 359.68911 * 10 9 8 12 12 F 1.35103 * 119.99266 * 180.02562 * 11 10 9 13 13 C 1.38361 * 120.01762 * 359.97438 * 11 10 9 14 14 N 1.46496 * 109.47457 * 239.99741 * 2 1 3 15 15 C 1.35316 * 125.86733 * 325.00219 * 14 2 1 16 16 C 1.35349 * 106.17807 * 180.02562 * 15 14 2 17 17 C 1.50697 * 126.75500 * 179.97438 * 16 15 14 18 18 N 1.46502 * 109.46824 * 94.99881 * 17 16 15 19 19 C 1.36943 * 119.99621 * 180.02562 * 18 17 16 20 20 H 1.08000 * 119.99777 * 359.97438 * 19 18 17 21 21 C 1.38808 * 120.00134 * 180.02562 * 19 18 17 22 22 N 1.31618 * 120.00345 * 179.97438 * 21 19 18 23 23 Si 1.86810 * 119.99823 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.46976 * 89.99978 * 23 21 19 25 25 H 1.48497 * 109.46942 * 209.99985 * 23 21 19 26 26 H 1.48500 * 109.46719 * 330.00213 * 23 21 19 27 27 N 1.33777 * 106.49340 * 359.97438 * 16 15 14 28 28 N 1.28634 * 108.88353 * 359.73868 * 27 16 15 29 29 H 1.09003 * 109.46897 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47202 * 300.00364 * 1 2 3 31 31 H 1.09007 * 109.46776 * 60.00542 * 1 2 3 32 32 H 0.96999 * 119.99802 * 355.36233 * 6 4 2 33 33 H 1.08008 * 120.01164 * 359.97195 * 8 7 6 34 34 H 1.08007 * 119.95418 * 180.32172 * 9 8 7 35 35 H 1.08007 * 119.94282 * 179.70176 * 10 9 8 36 36 H 1.07996 * 120.04532 * 180.02562 * 13 11 10 37 37 H 1.08009 * 126.90938 * 359.97318 * 15 14 2 38 38 H 1.09001 * 109.47204 * 214.99659 * 17 16 15 39 39 H 1.08998 * 109.47029 * 334.99977 * 17 16 15 40 40 H 0.96996 * 120.00436 * 359.97438 * 18 17 16 41 41 H 0.96999 * 119.99792 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.7296 -1.6964 1.1194 6 7 1.7112 -0.2465 2.4546 7 6 2.0954 -0.9593 3.5957 8 6 1.2695 -0.9826 4.7123 9 6 1.6472 -1.6920 5.8353 10 6 2.8526 -2.3691 5.8548 11 6 3.6820 -2.3434 4.7460 12 9 4.8590 -3.0062 4.7676 13 6 3.3050 -1.6399 3.6158 14 7 2.0184 -0.6906 -1.1961 15 6 1.4359 -1.7588 -1.7882 16 6 2.2132 -2.0712 -2.8513 17 6 1.9890 -3.1912 -3.8343 18 7 1.2720 -2.6778 -5.0042 19 6 0.9545 -3.5198 -6.0364 20 1 1.2331 -4.5622 -5.9882 21 6 0.2757 -3.0334 -7.1452 22 7 -0.0291 -3.8425 -8.1376 23 14 -0.2054 -1.2303 -7.2289 24 1 0.8881 -0.4554 -7.8683 25 1 -1.4478 -1.0861 -8.0294 26 1 -0.4389 -0.7161 -5.8555 27 7 3.2198 -1.1900 -2.8577 28 7 3.0722 -0.3821 -1.8677 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.2138 0.5814 2.5444 33 1 0.3300 -0.4500 4.7005 34 1 1.0023 -1.7141 6.7014 35 1 3.1479 -2.9191 6.7361 36 1 3.9513 -1.6198 2.7508 37 1 0.5327 -2.2616 -1.4750 38 1 2.9507 -3.5980 -4.1472 39 1 1.3986 -3.9763 -3.3620 40 1 1.0216 -1.7417 -5.0474 41 1 -0.5031 -3.5025 -8.9125 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603186695.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:08 Heat of formation + Delta-G solvation = 78.786271 kcal Electronic energy + Delta-G solvation = -27280.223915 eV Core-core repulsion = 23113.330535 eV Total energy + Delta-G solvation = -4166.893380 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.26276 -43.19992 -41.20622 -39.00491 -35.88608 -35.48867 -34.80914 -32.07245 -31.33041 -31.04110 -30.33414 -29.81540 -26.51399 -25.54706 -24.01138 -23.23689 -22.41310 -22.08580 -20.98388 -20.64975 -19.05002 -18.14836 -17.90582 -17.17670 -16.78544 -16.63404 -16.19940 -15.93252 -15.84272 -15.67354 -14.84158 -14.58464 -14.35800 -14.26174 -14.04736 -13.76432 -13.57810 -13.21457 -13.05553 -12.97388 -12.66017 -12.50067 -12.47800 -12.07844 -12.01666 -11.56150 -11.12375 -11.04934 -10.85904 -10.66859 -10.54603 -10.15383 -9.91843 -9.56535 -9.33673 -8.96693 -8.86984 -8.86458 -7.20438 -5.73086 -3.08595 0.50872 0.68200 1.49514 1.76770 1.97621 2.45519 2.80778 3.05773 3.40223 3.45780 3.48619 3.62306 3.81364 3.91621 4.10560 4.25906 4.45309 4.53996 4.54344 4.63379 4.74345 4.77041 4.88998 4.90265 5.14398 5.28705 5.41338 5.42034 5.52096 5.57551 5.65073 5.69349 5.71079 5.76577 5.77703 6.28949 6.37807 6.46078 6.61125 6.63922 6.71873 7.29193 8.01929 8.45596 8.70670 9.23778 9.96194 10.16683 11.45110 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.022357 B = 0.002305 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.114872 B =12142.484875 C =12602.233591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.134 3.866 3 H 0.142 0.858 4 C 0.505 3.495 5 O -0.486 6.486 6 N -0.667 5.667 7 C 0.174 3.826 8 C -0.153 4.153 9 C -0.071 4.071 10 C -0.168 4.168 11 C 0.120 3.880 12 F -0.134 7.134 13 C -0.159 4.159 14 N -0.290 5.290 15 C -0.028 4.028 16 C -0.009 4.009 17 C 0.238 3.762 18 N -0.749 5.749 19 C -0.242 4.242 20 H 0.093 0.907 21 C 0.006 3.994 22 N -0.933 5.933 23 Si 0.885 3.115 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.280 1.280 27 N -0.246 5.246 28 N -0.089 5.089 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.417 0.583 33 H 0.135 0.865 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.152 0.848 37 H 0.188 0.812 38 H 0.049 0.951 39 H 0.047 0.953 40 H 0.362 0.638 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.428 11.269 34.148 35.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.027 3.973 3 H 0.160 0.840 4 C 0.289 3.711 5 O -0.357 6.357 6 N -0.314 5.314 7 C 0.079 3.921 8 C -0.174 4.174 9 C -0.090 4.090 10 C -0.187 4.187 11 C 0.100 3.900 12 F -0.113 7.113 13 C -0.179 4.179 14 N -0.083 5.083 15 C -0.178 4.178 16 C -0.146 4.146 17 C 0.109 3.891 18 N -0.396 5.396 19 C -0.371 4.371 20 H 0.111 0.889 21 C -0.190 4.190 22 N -0.581 5.581 23 Si 0.715 3.285 24 H -0.210 1.210 25 H -0.218 1.218 26 H -0.206 1.206 27 N -0.115 5.115 28 N -0.067 5.067 29 H 0.100 0.900 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.254 0.746 33 H 0.153 0.847 34 H 0.157 0.843 35 H 0.155 0.845 36 H 0.169 0.831 37 H 0.205 0.795 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.195 0.805 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.303 11.272 33.717 35.553 hybrid contribution -1.364 0.943 0.124 1.662 sum -1.060 12.215 33.841 35.994 Atomic orbital electron populations 1.22231 0.89231 1.05402 1.05441 1.21298 0.97498 0.97934 0.80544 0.84003 1.20805 0.80737 0.85146 0.84386 1.90854 1.34169 1.24908 1.85806 1.43324 1.57568 1.26715 1.03817 1.17355 0.92546 0.95506 0.86666 1.20967 0.99759 1.03298 0.93353 1.20807 0.95359 0.94959 0.97875 1.21203 0.95637 1.03514 0.98392 1.17514 0.82824 0.94815 0.94817 1.91536 1.44588 1.78287 1.96868 1.21273 0.97036 1.00630 0.99001 1.46735 1.19001 1.22483 1.20122 1.23279 1.03141 0.93626 0.97721 1.22473 0.93124 1.00599 0.98402 1.18920 0.96699 0.88924 0.84545 1.42654 1.69155 1.09042 1.18715 1.19054 1.30177 0.93391 0.94511 0.88873 1.24636 1.00730 0.97196 0.96455 1.69699 1.45831 1.34043 1.08567 0.86536 0.78023 0.86794 0.77097 1.20976 1.21770 1.20623 1.75090 1.21099 1.03086 1.12175 1.78274 1.03605 1.21804 1.03043 0.90031 0.88988 0.89056 0.74626 0.84725 0.84321 0.84456 0.83069 0.79520 0.93330 0.93565 0.80528 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.74 8.74 37.16 0.32 -0.42 16 2 C 0.13 1.05 3.65 -69.09 -0.25 0.80 16 3 H 0.14 0.74 8.14 -51.93 -0.42 0.32 16 4 C 0.50 4.51 7.07 -10.99 -0.08 4.43 16 5 O -0.49 -6.82 13.84 5.55 0.08 -6.74 16 6 N -0.67 -3.57 5.20 -9.87 -0.05 -3.62 16 7 C 0.17 1.25 6.30 -83.71 -0.53 0.72 16 8 C -0.15 -0.74 9.96 -39.39 -0.39 -1.13 16 9 C -0.07 -0.34 10.04 -39.62 -0.40 -0.74 16 10 C -0.17 -1.12 10.02 -39.48 -0.40 -1.51 16 11 C 0.12 1.14 7.30 -39.45 -0.29 0.85 16 12 F -0.13 -1.49 17.27 2.25 0.04 -1.45 16 13 C -0.16 -1.58 8.68 -39.33 -0.34 -1.93 16 14 N -0.29 -3.97 2.75 -55.89 -0.15 -4.12 16 15 C -0.03 -0.42 10.60 -17.05 -0.18 -0.60 16 16 C -0.01 -0.17 6.61 -82.78 -0.55 -0.72 16 17 C 0.24 4.98 6.82 -5.19 -0.04 4.95 16 18 N -0.75 -18.73 5.40 -61.09 -0.33 -19.06 16 19 C -0.24 -6.99 10.47 -15.06 -0.16 -7.15 16 20 H 0.09 2.84 8.06 -52.49 -0.42 2.41 16 21 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 22 N -0.93 -29.68 13.97 55.49 0.78 -28.90 16 23 Si 0.88 22.76 27.74 -169.99 -4.71 18.05 16 24 H -0.28 -7.36 7.11 56.52 0.40 -6.95 16 25 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 26 H -0.28 -6.80 6.52 56.52 0.37 -6.43 16 27 N -0.25 -5.00 12.41 33.29 0.41 -4.59 16 28 N -0.09 -1.55 13.16 60.35 0.79 -0.76 16 29 H 0.08 0.43 7.17 -51.93 -0.37 0.05 16 30 H 0.09 0.07 7.69 -51.93 -0.40 -0.33 16 31 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.42 0.47 8.41 -40.82 -0.34 0.12 16 33 H 0.13 0.26 8.06 -52.48 -0.42 -0.17 16 34 H 0.14 0.27 8.06 -52.48 -0.42 -0.15 16 35 H 0.14 0.66 8.06 -52.48 -0.42 0.24 16 36 H 0.15 1.86 6.21 -52.49 -0.33 1.54 16 37 H 0.19 2.20 7.30 -52.48 -0.38 1.82 16 38 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.36 9.05 5.52 -40.82 -0.23 8.82 16 41 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 LS Contribution 359.64 15.07 5.42 5.42 Total: -1.00 -39.55 359.64 -5.70 -45.25 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -4.60 Total: 2.89 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -3.36 Total: -2.37 kcal Atomic # 7 Polarization: -62.50 SS G_CDS: 1.45 Total: -61.05 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: 0.08 Total: -6.74 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -4.71 Total: 18.05 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -39.55 -5.70 -45.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603186695.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.032 kcal (2) G-P(sol) polarization free energy of solvation -39.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds