Wall clock time and date at job start Tue Mar 31 2020 18:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47147 * 2 1 4 4 C 1.50700 * 109.46876 * 240.00232 * 2 1 3 5 5 O 1.21290 * 120.00202 * 239.99913 * 4 2 1 6 6 N 1.34782 * 120.00114 * 60.00093 * 4 2 1 7 7 C 1.39921 * 120.00112 * 175.38985 * 6 4 2 8 8 C 1.38905 * 120.05545 * 214.81366 * 7 6 4 9 9 C 1.38097 * 119.97892 * 179.72574 * 8 7 6 10 10 C 1.38266 * 120.09336 * 0.57052 * 9 8 7 11 11 C 1.38485 * 120.11732 * 359.70450 * 10 9 8 12 12 F 1.35098 * 119.99434 * 180.02562 * 11 10 9 13 13 C 1.38352 * 120.01584 * 359.97438 * 11 10 9 14 14 N 1.46498 * 109.47213 * 120.00665 * 2 1 3 15 15 C 1.35317 * 125.87187 * 35.02110 * 14 2 1 16 16 C 1.35348 * 106.17481 * 180.02562 * 15 14 2 17 17 C 1.50706 * 126.74685 * 180.02562 * 16 15 14 18 18 N 1.46500 * 109.47321 * 95.00188 * 17 16 15 19 19 C 1.36935 * 120.00078 * 180.02562 * 18 17 16 20 20 H 1.08005 * 119.99894 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99807 * 179.97438 * 19 18 17 22 22 N 1.31611 * 120.00429 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99861 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47481 * 89.99574 * 23 21 19 25 25 H 1.48501 * 109.47484 * 209.99692 * 23 21 19 26 26 H 1.48504 * 109.47024 * 329.99708 * 23 21 19 27 27 N 1.33770 * 106.49699 * 359.97438 * 16 15 14 28 28 N 1.28633 * 108.88794 * 0.02562 * 27 16 15 29 29 H 1.08997 * 109.47517 * 59.99452 * 1 2 3 30 30 H 1.08996 * 109.47147 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46921 * 299.99674 * 1 2 3 32 32 H 0.96997 * 119.99491 * 355.38798 * 6 4 2 33 33 H 1.08006 * 120.01201 * 359.97438 * 8 7 6 34 34 H 1.08005 * 119.95198 * 180.29653 * 9 8 7 35 35 H 1.08003 * 119.93978 * 179.72487 * 10 9 8 36 36 H 1.08001 * 120.04603 * 180.02562 * 13 11 10 37 37 H 1.07993 * 126.90772 * 359.97438 * 15 14 2 38 38 H 1.09001 * 109.46607 * 214.99713 * 17 16 15 39 39 H 1.08997 * 109.47058 * 334.99419 * 17 16 15 40 40 H 0.97003 * 119.99678 * 359.97438 * 18 17 16 41 41 H 0.97002 * 120.00632 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1193 6 7 1.7067 -0.2498 -2.4546 7 6 2.2505 -0.8503 -3.5955 8 6 2.5537 -0.0789 -4.7102 9 6 3.0957 -0.6722 -5.8332 10 6 3.3261 -2.0354 -5.8543 11 6 3.0200 -2.8091 -4.7473 12 9 3.2467 -4.1407 -4.7705 13 6 2.4831 -2.2185 -3.6173 14 7 2.0184 -0.6907 1.1961 15 6 1.4361 -1.7592 1.7880 16 6 2.2128 -2.0707 2.8517 17 6 1.9884 -3.1907 3.8348 18 7 2.7606 -4.3652 3.4216 19 6 2.7128 -5.5129 4.1670 20 1 2.1061 -5.5522 5.0597 21 6 3.4441 -6.6258 3.7752 22 7 4.1829 -6.5781 2.6871 23 14 3.3794 -8.1912 4.7924 24 1 2.2741 -9.0540 4.3035 25 1 4.6681 -8.9180 4.6649 26 1 3.1447 -7.8462 6.2176 27 7 3.2192 -1.1895 2.8582 28 7 3.0750 -0.3854 1.8646 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.0953 0.4978 -2.5447 33 1 2.3695 0.9853 -4.6971 34 1 3.3357 -0.0713 -6.6980 35 1 3.7459 -2.4975 -6.7356 36 1 2.2445 -2.8214 -2.7535 37 1 0.5329 -2.2617 1.4750 38 1 2.3116 -2.8739 4.8264 39 1 0.9285 -3.4437 3.8616 40 1 3.3052 -4.3299 2.6197 41 1 4.6937 -7.3559 2.4131 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603186696.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:11 Heat of formation + Delta-G solvation = 76.472591 kcal Electronic energy + Delta-G solvation = -27536.604388 eV Core-core repulsion = 23369.610679 eV Total energy + Delta-G solvation = -4166.993709 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.04545 -43.04891 -41.03277 -38.83385 -35.72946 -35.31507 -34.57067 -31.98229 -31.16483 -30.88354 -29.88526 -29.65256 -26.20157 -25.34383 -23.86582 -23.06238 -22.74712 -21.92696 -20.86270 -20.44958 -18.88457 -17.99102 -17.44458 -16.95029 -16.67129 -16.49870 -15.87099 -15.78917 -15.65045 -15.39290 -14.75733 -14.64184 -14.35137 -14.00433 -13.68558 -13.60297 -13.39160 -13.14036 -13.05907 -12.82782 -12.59413 -12.38727 -12.32412 -11.89558 -11.82238 -11.22348 -10.87573 -10.83652 -10.74813 -10.51098 -10.42068 -10.02355 -9.80355 -9.65015 -9.15174 -8.81695 -8.77190 -8.68945 -6.83269 -5.64572 -2.94975 0.68268 0.85931 1.62081 1.96259 2.15422 2.57253 2.97297 3.23477 3.51179 3.55685 3.58435 3.74332 3.96195 4.07855 4.19877 4.41816 4.61747 4.64363 4.70580 4.71413 4.83546 4.92253 4.96091 5.06972 5.30289 5.32417 5.54831 5.58160 5.69521 5.70134 5.81967 5.84304 5.89559 5.94274 6.26169 6.45158 6.56161 6.61918 6.70358 6.78824 6.83980 7.48568 7.78112 8.51761 8.85850 9.63336 10.20011 10.55834 11.57808 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010640 B = 0.003106 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2630.906836 B = 9011.959551 C =11187.947503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.136 3.864 3 H 0.141 0.859 4 C 0.499 3.501 5 O -0.476 6.476 6 N -0.668 5.668 7 C 0.174 3.826 8 C -0.156 4.156 9 C -0.073 4.073 10 C -0.169 4.169 11 C 0.122 3.878 12 F -0.132 7.132 13 C -0.157 4.157 14 N -0.290 5.290 15 C -0.030 4.030 16 C -0.003 4.003 17 C 0.233 3.767 18 N -0.726 5.726 19 C -0.241 4.241 20 H 0.073 0.927 21 C -0.013 4.013 22 N -0.929 5.929 23 Si 0.909 3.091 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.281 1.281 27 N -0.246 5.246 28 N -0.090 5.090 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.415 0.585 33 H 0.134 0.866 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.153 0.847 37 H 0.186 0.814 38 H 0.039 0.961 39 H 0.037 0.963 40 H 0.387 0.613 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.679 20.611 -19.354 30.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.028 3.972 3 H 0.159 0.841 4 C 0.283 3.717 5 O -0.346 6.346 6 N -0.316 5.316 7 C 0.079 3.921 8 C -0.176 4.176 9 C -0.091 4.091 10 C -0.189 4.189 11 C 0.103 3.897 12 F -0.111 7.111 13 C -0.178 4.178 14 N -0.084 5.084 15 C -0.180 4.180 16 C -0.140 4.140 17 C 0.104 3.896 18 N -0.371 5.371 19 C -0.372 4.372 20 H 0.091 0.909 21 C -0.209 4.209 22 N -0.577 5.577 23 Si 0.740 3.260 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.207 1.207 27 N -0.114 5.114 28 N -0.068 5.068 29 H 0.109 0.891 30 H 0.100 0.900 31 H 0.108 0.892 32 H 0.252 0.748 33 H 0.151 0.849 34 H 0.156 0.844 35 H 0.155 0.845 36 H 0.171 0.829 37 H 0.203 0.797 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.221 0.779 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.981 20.690 -18.923 29.762 hybrid contribution -0.882 -1.448 -0.156 1.703 sum -10.863 19.242 -19.079 29.193 Atomic orbital electron populations 1.22217 0.89485 1.05330 1.05202 1.21274 0.97260 0.97875 0.80748 0.84100 1.20841 0.81052 0.85442 0.84405 1.90931 1.34387 1.23675 1.85626 1.43320 1.47954 1.36463 1.03850 1.17348 0.97196 0.90881 0.86647 1.20936 1.03330 0.99862 0.93475 1.20777 0.96793 0.93722 0.97838 1.21194 1.04572 0.94649 0.98447 1.17529 0.99500 0.77959 0.94761 1.91553 1.92160 1.30510 1.96832 1.21314 1.03040 0.94431 0.99048 1.46721 1.18745 1.22739 1.20179 1.23221 1.03912 0.93417 0.97423 1.22435 0.92838 0.99560 0.99123 1.18943 0.95527 0.82783 0.92328 1.42328 1.55138 1.08522 1.31095 1.19213 1.23179 0.89506 1.05284 0.90920 1.24772 0.99828 0.98330 0.97993 1.69694 1.33261 1.29852 1.24920 0.86170 0.76848 0.83555 0.79476 1.21776 1.21816 1.20693 1.75072 1.20320 1.03460 1.12544 1.78260 1.03324 1.22234 1.03016 0.89119 0.90022 0.89210 0.74836 0.84861 0.84440 0.84502 0.82906 0.79712 0.94331 0.94563 0.77949 0.93513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.73 8.73 37.16 0.32 -0.41 16 2 C 0.14 1.18 3.66 -69.08 -0.25 0.92 16 3 H 0.14 0.83 8.14 -51.93 -0.42 0.40 16 4 C 0.50 5.42 7.07 -10.98 -0.08 5.34 16 5 O -0.48 -8.15 13.85 5.55 0.08 -8.07 16 6 N -0.67 -4.68 5.26 -9.87 -0.05 -4.73 16 7 C 0.17 1.60 6.30 -83.71 -0.53 1.07 16 8 C -0.16 -1.03 9.96 -39.39 -0.39 -1.42 16 9 C -0.07 -0.48 10.04 -39.62 -0.40 -0.88 16 10 C -0.17 -1.48 10.02 -39.48 -0.40 -1.87 16 11 C 0.12 1.47 7.30 -39.45 -0.29 1.18 16 12 F -0.13 -1.85 17.27 2.25 0.04 -1.82 16 13 C -0.16 -1.96 8.68 -39.33 -0.34 -2.31 16 14 N -0.29 -4.25 2.75 -55.89 -0.15 -4.40 16 15 C -0.03 -0.48 10.60 -17.05 -0.18 -0.66 16 16 C 0.00 -0.05 6.62 -82.78 -0.55 -0.60 16 17 C 0.23 5.14 6.82 -5.19 -0.04 5.10 16 18 N -0.73 -20.04 5.59 -61.08 -0.34 -20.38 16 19 C -0.24 -7.07 9.99 -15.06 -0.15 -7.22 16 20 H 0.07 2.02 7.83 -52.48 -0.41 1.61 16 21 C -0.01 -0.39 5.50 -17.44 -0.10 -0.49 16 22 N -0.93 -30.00 13.06 55.49 0.72 -29.27 16 23 Si 0.91 23.28 29.55 -169.99 -5.02 18.26 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 25 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 26 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 27 N -0.25 -5.29 12.41 33.29 0.41 -4.87 16 28 N -0.09 -1.67 13.16 60.35 0.79 -0.88 16 29 H 0.09 0.08 7.47 -51.93 -0.39 -0.31 16 30 H 0.08 0.44 7.17 -51.93 -0.37 0.07 16 31 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.41 0.95 8.11 -40.82 -0.33 0.62 16 33 H 0.13 0.46 8.06 -52.48 -0.42 0.04 16 34 H 0.14 0.49 8.06 -52.48 -0.42 0.07 16 35 H 0.14 0.94 8.06 -52.48 -0.42 0.51 16 36 H 0.15 2.31 6.22 -52.49 -0.33 1.99 16 37 H 0.19 2.36 7.30 -52.49 -0.38 1.98 16 38 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.39 11.71 7.66 -40.82 -0.31 11.40 16 41 H 0.25 7.93 8.31 -40.82 -0.34 7.59 16 LS Contribution 362.32 15.07 5.46 5.46 Total: -1.00 -40.89 362.32 -6.04 -46.93 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -4.62 Total: 6.00 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -3.36 Total: -2.22 kcal Atomic # 7 Polarization: -65.93 SS G_CDS: 1.38 Total: -64.54 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: 0.08 Total: -8.07 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 23.28 SS G_CDS: -5.02 Total: 18.26 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -40.89 -6.04 -46.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603186696.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.403 kcal (2) G-P(sol) polarization free energy of solvation -40.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds