Wall clock time and date at job start Tue Mar 31 2020 18:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47147 * 2 1 4 4 C 1.50700 * 109.46876 * 240.00232 * 2 1 3 5 5 O 1.21290 * 120.00202 * 239.99913 * 4 2 1 6 6 N 1.34782 * 120.00114 * 60.00093 * 4 2 1 7 7 C 1.39921 * 120.00112 * 175.38985 * 6 4 2 8 8 C 1.38905 * 120.05545 * 214.81366 * 7 6 4 9 9 C 1.38097 * 119.97892 * 179.72574 * 8 7 6 10 10 C 1.38266 * 120.09336 * 0.57052 * 9 8 7 11 11 C 1.38485 * 120.11732 * 359.70450 * 10 9 8 12 12 F 1.35098 * 119.99434 * 180.02562 * 11 10 9 13 13 C 1.38352 * 120.01584 * 359.97438 * 11 10 9 14 14 N 1.46498 * 109.47213 * 120.00665 * 2 1 3 15 15 C 1.35317 * 125.87187 * 35.02110 * 14 2 1 16 16 C 1.35348 * 106.17481 * 180.02562 * 15 14 2 17 17 C 1.50706 * 126.74685 * 180.02562 * 16 15 14 18 18 N 1.46500 * 109.47321 * 95.00188 * 17 16 15 19 19 C 1.36935 * 120.00078 * 180.02562 * 18 17 16 20 20 H 1.08005 * 119.99894 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99807 * 179.97438 * 19 18 17 22 22 N 1.31611 * 120.00429 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99861 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47481 * 89.99574 * 23 21 19 25 25 H 1.48501 * 109.47484 * 209.99692 * 23 21 19 26 26 H 1.48504 * 109.47024 * 329.99708 * 23 21 19 27 27 N 1.33770 * 106.49699 * 359.97438 * 16 15 14 28 28 N 1.28633 * 108.88794 * 0.02562 * 27 16 15 29 29 H 1.08997 * 109.47517 * 59.99452 * 1 2 3 30 30 H 1.08996 * 109.47147 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46921 * 299.99674 * 1 2 3 32 32 H 0.96997 * 119.99491 * 355.38798 * 6 4 2 33 33 H 1.08006 * 120.01201 * 359.97438 * 8 7 6 34 34 H 1.08005 * 119.95198 * 180.29653 * 9 8 7 35 35 H 1.08003 * 119.93978 * 179.72487 * 10 9 8 36 36 H 1.08001 * 120.04603 * 180.02562 * 13 11 10 37 37 H 1.07993 * 126.90772 * 359.97438 * 15 14 2 38 38 H 1.09001 * 109.46607 * 214.99713 * 17 16 15 39 39 H 1.08997 * 109.47058 * 334.99419 * 17 16 15 40 40 H 0.97003 * 119.99678 * 359.97438 * 18 17 16 41 41 H 0.97002 * 120.00632 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1193 6 7 1.7067 -0.2498 -2.4546 7 6 2.2505 -0.8503 -3.5955 8 6 2.5537 -0.0789 -4.7102 9 6 3.0957 -0.6722 -5.8332 10 6 3.3261 -2.0354 -5.8543 11 6 3.0200 -2.8091 -4.7473 12 9 3.2467 -4.1407 -4.7705 13 6 2.4831 -2.2185 -3.6173 14 7 2.0184 -0.6907 1.1961 15 6 1.4361 -1.7592 1.7880 16 6 2.2128 -2.0707 2.8517 17 6 1.9884 -3.1907 3.8348 18 7 2.7606 -4.3652 3.4216 19 6 2.7128 -5.5129 4.1670 20 1 2.1061 -5.5522 5.0597 21 6 3.4441 -6.6258 3.7752 22 7 4.1829 -6.5781 2.6871 23 14 3.3794 -8.1912 4.7924 24 1 2.2741 -9.0540 4.3035 25 1 4.6681 -8.9180 4.6649 26 1 3.1447 -7.8462 6.2176 27 7 3.2192 -1.1895 2.8582 28 7 3.0750 -0.3854 1.8646 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.0953 0.4978 -2.5447 33 1 2.3695 0.9853 -4.6971 34 1 3.3357 -0.0713 -6.6980 35 1 3.7459 -2.4975 -6.7356 36 1 2.2445 -2.8214 -2.7535 37 1 0.5329 -2.2617 1.4750 38 1 2.3116 -2.8739 4.8264 39 1 0.9285 -3.4437 3.8616 40 1 3.3052 -4.3299 2.6197 41 1 4.6937 -7.3559 2.4131 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603186696.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:11 Heat of formation + Delta-G solvation = 44.408535 kcal Electronic energy + Delta-G solvation = -27537.994790 eV Core-core repulsion = 23369.610679 eV Total energy + Delta-G solvation = -4168.384111 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.00731 -44.36268 -41.86284 -39.60386 -37.05589 -36.30874 -36.04328 -33.82523 -32.19535 -31.69814 -31.61937 -30.36617 -27.81719 -26.33293 -24.80716 -24.72820 -23.83644 -22.88825 -22.31671 -21.39698 -19.75958 -19.34523 -18.80883 -18.18757 -17.55630 -17.22930 -17.04280 -16.73438 -16.62809 -16.51424 -16.30047 -15.89972 -15.62437 -15.38056 -15.02505 -14.67621 -14.49382 -14.34128 -13.91186 -13.80422 -13.58231 -13.49823 -13.11901 -12.89743 -12.82971 -12.79397 -12.62667 -12.54397 -12.11004 -11.92654 -11.86025 -11.68401 -11.52678 -10.98355 -10.88971 -10.23454 -9.90974 -9.38511 -9.05364 -7.94490 -5.26636 -0.02858 0.13702 0.43540 1.15538 1.17998 1.41872 1.48367 1.50411 1.59350 1.78002 2.56560 2.57742 3.04833 3.23176 3.34037 3.38094 3.51525 3.62316 3.79342 3.93183 3.99868 4.07269 4.14390 4.19608 4.28574 4.42070 4.44470 4.53293 4.63037 4.81671 4.96090 5.03825 5.04134 5.09293 5.13350 5.15818 5.19315 5.29745 5.47875 5.53990 5.86315 6.11808 6.23392 6.81394 7.29350 7.44939 8.01061 8.27346 9.29573 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010640 B = 0.003106 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2630.906836 B = 9011.959551 C =11187.947503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.127 3.873 3 H 0.178 0.822 4 C 0.499 3.501 5 O -0.550 6.550 6 N -0.640 5.640 7 C 0.161 3.839 8 C -0.134 4.134 9 C -0.062 4.062 10 C -0.166 4.166 11 C 0.081 3.919 12 F -0.158 7.158 13 C -0.189 4.189 14 N -0.274 5.274 15 C -0.009 4.009 16 C -0.037 4.037 17 C 0.235 3.765 18 N -0.742 5.742 19 C -0.244 4.244 20 H 0.089 0.911 21 C -0.083 4.083 22 N -0.976 5.976 23 Si 0.984 3.016 24 H -0.282 1.282 25 H -0.299 1.299 26 H -0.263 1.263 27 N -0.293 5.293 28 N -0.104 5.104 29 H 0.138 0.862 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.441 0.559 33 H 0.180 0.820 34 H 0.182 0.818 35 H 0.154 0.846 36 H 0.112 0.888 37 H 0.218 0.782 38 H 0.033 0.967 39 H 0.064 0.936 40 H 0.367 0.633 41 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.105 23.853 -21.003 34.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.023 3.977 3 H 0.195 0.805 4 C 0.285 3.715 5 O -0.426 6.426 6 N -0.289 5.289 7 C 0.067 3.933 8 C -0.154 4.154 9 C -0.080 4.080 10 C -0.186 4.186 11 C 0.062 3.938 12 F -0.137 7.137 13 C -0.210 4.210 14 N -0.068 5.068 15 C -0.161 4.161 16 C -0.175 4.175 17 C 0.108 3.892 18 N -0.385 5.385 19 C -0.375 4.375 20 H 0.107 0.893 21 C -0.274 4.274 22 N -0.627 5.627 23 Si 0.812 3.188 24 H -0.209 1.209 25 H -0.226 1.226 26 H -0.188 1.188 27 N -0.161 5.161 28 N -0.083 5.083 29 H 0.156 0.844 30 H 0.090 0.910 31 H 0.120 0.880 32 H 0.283 0.717 33 H 0.198 0.802 34 H 0.199 0.801 35 H 0.172 0.828 36 H 0.130 0.870 37 H 0.235 0.765 38 H 0.051 0.949 39 H 0.082 0.918 40 H 0.198 0.802 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -12.486 24.042 -20.581 34.022 hybrid contribution -0.199 -2.264 0.193 2.280 sum -12.685 21.778 -20.388 32.418 Atomic orbital electron populations 1.22379 0.85555 1.05683 1.08143 1.22012 1.00104 0.98270 0.77322 0.80510 1.21256 0.79890 0.84445 0.85922 1.90940 1.37972 1.26999 1.86670 1.43050 1.47388 1.36274 1.02154 1.17536 0.97794 0.89862 0.88128 1.21447 1.00575 1.01663 0.91672 1.21350 0.94810 0.92770 0.99112 1.21513 1.03732 0.95712 0.97611 1.17987 1.02013 0.77448 0.96401 1.91473 1.92707 1.32434 1.97055 1.21201 1.05423 0.96198 0.98161 1.47143 1.17020 1.21943 1.20695 1.23563 1.03912 0.92938 0.95643 1.22279 0.94335 1.00017 1.00876 1.19000 0.95903 0.81751 0.92570 1.42580 1.55595 1.09966 1.30323 1.19744 1.22282 0.90065 1.05397 0.89344 1.25752 1.00038 1.02192 0.99454 1.69905 1.34933 1.30597 1.27294 0.84991 0.76404 0.78882 0.78551 1.20900 1.22617 1.18753 1.74982 1.21763 1.04816 1.14507 1.78095 1.04761 1.22300 1.03115 0.84426 0.90968 0.87981 0.71652 0.80247 0.80097 0.82824 0.86989 0.76522 0.94886 0.91782 0.80217 0.94200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.78 8.73 71.98 0.63 -0.15 16 2 C 0.13 1.89 3.66 44.25 0.16 2.05 16 3 H 0.18 1.37 8.14 -2.39 -0.02 1.35 16 4 C 0.50 10.39 7.07 87.66 0.62 11.01 16 5 O -0.55 -19.92 13.85 -3.06 -0.04 -19.96 16 6 N -0.64 -7.30 5.26 -303.52 -1.60 -8.89 16 7 C 0.16 2.73 6.30 38.14 0.24 2.97 16 8 C -0.13 -1.19 9.96 22.40 0.22 -0.96 16 9 C -0.06 -0.57 10.04 22.24 0.22 -0.34 16 10 C -0.17 -2.71 10.02 22.34 0.22 -2.49 16 11 C 0.08 2.09 7.30 22.36 0.16 2.25 16 12 F -0.16 -4.98 17.27 44.97 0.78 -4.20 16 13 C -0.19 -5.06 8.68 22.43 0.19 -4.87 16 14 N -0.27 -7.85 2.75 -330.75 -0.91 -8.75 16 15 C -0.01 -0.30 10.60 83.49 0.89 0.59 16 16 C -0.04 -1.54 6.62 41.60 0.28 -1.27 16 17 C 0.24 10.57 6.82 85.63 0.58 11.16 16 18 N -0.74 -42.37 5.59 -347.17 -1.94 -44.31 16 19 C -0.24 -14.52 9.99 84.03 0.84 -13.68 16 20 H 0.09 4.87 7.83 -2.91 -0.02 4.85 16 21 C -0.08 -5.11 5.50 84.86 0.47 -4.64 16 22 N -0.98 -65.67 13.06 21.65 0.28 -65.39 16 23 Si 0.98 48.83 29.55 68.60 2.03 50.85 16 24 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 25 H -0.30 -15.09 7.11 99.48 0.71 -14.38 16 26 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 27 N -0.29 -13.08 12.41 -48.60 -0.60 -13.68 16 28 N -0.10 -3.93 13.16 37.02 0.49 -3.44 16 29 H 0.14 -0.59 7.47 -2.39 -0.02 -0.61 16 30 H 0.07 0.56 7.17 -2.39 -0.02 0.54 16 31 H 0.10 0.37 8.14 -2.38 -0.02 0.35 16 32 H 0.44 -0.13 8.11 -92.71 -0.75 -0.88 16 33 H 0.18 -0.02 8.06 -2.91 -0.02 -0.05 16 34 H 0.18 0.15 8.06 -2.91 -0.02 0.13 16 35 H 0.15 1.88 8.06 -2.91 -0.02 1.85 16 36 H 0.11 3.90 6.22 -2.91 -0.02 3.88 16 37 H 0.22 5.24 7.30 -2.91 -0.02 5.22 16 38 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 40 H 0.37 23.46 7.66 -92.71 -0.71 22.75 16 41 H 0.25 16.21 8.31 -92.71 -0.77 15.44 16 Total: -1.00 -99.82 362.32 3.85 -95.97 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: -0.36 Total: 20.19 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: 5.73 Total: 1.63 kcal Atomic # 7 Polarization: -140.19 SS G_CDS: -4.28 Total: -144.47 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.04 Total: -19.96 kcal Atomic # 9 Polarization: -4.98 SS G_CDS: 0.78 Total: -4.20 kcal Atomic # 14 Polarization: 48.83 SS G_CDS: 2.03 Total: 50.85 kcal Total: -99.82 3.85 -95.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603186696.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.374 kcal (2) G-P(sol) polarization free energy of solvation -99.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds