Wall clock time and date at job start Tue Mar 31 2020 18:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 O 1.21283 * 120.00261 * 120.00003 * 4 2 1 6 6 N 1.34777 * 120.00075 * 300.00543 * 4 2 1 7 7 C 1.46498 * 119.99953 * 359.97438 * 6 4 2 8 8 C 1.46500 * 120.00084 * 180.02562 * 6 4 2 9 9 C 1.50698 * 109.47587 * 89.99577 * 8 6 4 10 10 H 1.08008 * 119.99838 * 359.97438 * 9 8 6 11 11 C 1.37869 * 120.00446 * 180.02562 * 9 8 6 12 12 N 1.31521 * 119.99830 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00307 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47310 * 59.99813 * 13 11 9 15 15 H 1.48500 * 109.47348 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47219 * 299.99773 * 13 11 9 17 17 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 18 18 C 1.35207 * 125.74880 * 325.00019 * 17 2 1 19 19 C 1.36489 * 106.04572 * 179.97438 * 18 17 2 20 20 C 1.48452 * 126.90582 * 180.02562 * 19 18 17 21 21 C 1.39325 * 120.52270 * 5.00119 * 20 19 18 22 22 N 1.31714 * 120.65366 * 180.02562 * 21 20 19 23 23 C 1.31894 * 121.87777 * 359.97438 * 22 21 20 24 24 C 1.38509 * 120.98520 * 359.97438 * 23 22 21 25 25 F 1.35096 * 120.38539 * 180.02562 * 24 23 22 26 26 C 1.38669 * 119.22992 * 359.80883 * 24 23 22 27 27 N 1.34502 * 106.18839 * 359.97438 * 19 18 17 28 28 N 1.28617 * 108.78162 * 359.73472 * 27 19 18 29 29 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 32 32 H 1.09001 * 109.47076 * 90.00302 * 7 6 4 33 33 H 1.08996 * 109.47427 * 210.00785 * 7 6 4 34 34 H 1.08999 * 109.47290 * 330.00489 * 7 6 4 35 35 H 1.08995 * 109.46789 * 209.99681 * 8 6 4 36 36 H 1.08999 * 109.46866 * 329.99207 * 8 6 4 37 37 H 0.97001 * 119.99962 * 180.02562 * 12 11 9 38 38 H 1.08002 * 126.98108 * 0.02562 * 18 17 2 39 39 H 1.07997 * 119.67054 * 359.97438 * 21 20 19 40 40 H 1.08001 * 119.50696 * 179.97438 * 23 22 21 41 41 H 1.08001 * 120.85105 * 180.23773 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7297 -1.6965 1.1191 6 7 1.7068 -0.2501 2.4545 7 6 0.8648 0.9413 2.5890 8 6 2.1956 -0.9404 3.6507 9 6 3.5230 -0.3563 4.0606 10 1 3.9591 0.4484 3.4872 11 6 4.1812 -0.8498 5.1669 12 7 3.6504 -1.8300 5.8649 13 14 5.8261 -0.1253 5.6755 14 1 5.6599 1.3202 5.9721 15 1 6.3217 -0.8252 6.8878 16 1 6.8043 -0.2947 4.5710 17 7 2.0184 -0.6906 -1.1962 18 6 1.4342 -1.7578 -1.7861 19 6 2.2177 -2.0717 -2.8587 20 6 1.9995 -3.1728 -3.8302 21 6 0.8487 -3.9556 -3.7658 22 7 0.6527 -4.9335 -4.6260 23 6 1.5254 -5.2118 -5.5750 24 6 2.6937 -4.4795 -5.7064 25 9 3.5791 -4.7747 -6.6832 26 6 2.9419 -3.4369 -4.8264 27 7 3.2265 -1.1821 -2.8594 28 7 3.0714 -0.3794 -1.8665 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 -0.1832 0.6437 2.6222 33 1 1.1227 1.4665 3.5086 34 1 1.0286 1.6001 1.7362 35 1 1.4777 -0.8152 4.4612 36 1 2.3171 -2.0016 3.4335 37 1 4.1133 -2.1770 6.6435 38 1 0.5307 -2.2595 -1.4727 39 1 0.1104 -3.7590 -3.0024 40 1 1.3261 -6.0228 -6.2598 41 1 3.8426 -2.8464 -4.9074 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603187528.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:44 Heat of formation + Delta-G solvation = 69.095172 kcal Electronic energy + Delta-G solvation = -27610.626162 eV Core-core repulsion = 23443.312544 eV Total energy + Delta-G solvation = -4167.313618 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.23599 -43.38131 -40.22912 -39.57561 -35.49708 -35.28196 -33.66956 -32.75954 -31.89799 -30.90953 -29.81880 -27.88393 -26.58651 -25.25039 -24.65296 -24.00797 -23.18161 -21.66009 -21.37697 -19.32212 -18.11737 -17.30537 -17.25761 -17.13398 -16.99306 -16.64989 -16.09005 -15.71424 -15.51602 -15.21904 -14.77283 -14.46275 -14.16302 -13.99141 -13.92396 -13.75597 -13.41125 -13.33918 -12.73916 -12.53529 -12.46124 -12.30248 -12.08688 -11.78305 -11.71733 -11.33276 -11.13460 -11.02469 -10.98393 -10.69986 -10.29612 -10.21060 -10.01900 -9.81863 -9.59858 -9.26503 -8.65476 -8.55348 -7.98235 -6.17325 -4.23121 0.35614 0.73787 1.55223 2.09325 2.48711 2.87569 3.25152 3.30293 3.33580 3.45752 3.51007 3.65200 3.85069 4.12410 4.29233 4.33398 4.37552 4.46556 4.53283 4.56077 4.57031 4.76878 5.00258 5.08787 5.15935 5.18837 5.27428 5.33295 5.44402 5.52040 5.58687 5.61219 5.85586 5.89490 5.98667 6.26733 6.37469 6.76176 7.17318 7.26222 7.45891 7.77157 8.00640 8.05696 8.39902 8.54958 8.81126 9.42797 10.90872 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.016277 B = 0.002575 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.834275 B =10870.853598 C =11530.521569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.118 3.882 3 H 0.137 0.863 4 C 0.496 3.504 5 O -0.519 6.519 6 N -0.589 5.589 7 C 0.072 3.928 8 C 0.247 3.753 9 C -0.533 4.533 10 H 0.058 0.942 11 C 0.064 3.936 12 N -0.893 5.893 13 Si 0.899 3.101 14 H -0.276 1.276 15 H -0.285 1.285 16 H -0.275 1.275 17 N -0.260 5.260 18 C -0.004 4.004 19 C 0.000 4.000 20 C -0.010 4.010 21 C 0.102 3.898 22 N -0.451 5.451 23 C 0.069 3.931 24 C 0.053 3.947 25 F -0.129 7.129 26 C -0.089 4.089 27 N -0.254 5.254 28 N -0.064 5.064 29 H 0.107 0.893 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.082 0.918 34 H 0.059 0.941 35 H 0.038 0.962 36 H 0.045 0.955 37 H 0.266 0.734 38 H 0.193 0.807 39 H 0.166 0.834 40 H 0.169 0.831 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.808 1.384 -17.772 21.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.012 3.988 3 H 0.155 0.845 4 C 0.279 3.721 5 O -0.395 6.395 6 N -0.322 5.322 7 C -0.071 4.071 8 C 0.128 3.872 9 C -0.572 4.572 10 H 0.076 0.924 11 C -0.139 4.139 12 N -0.532 5.532 13 Si 0.727 3.273 14 H -0.201 1.201 15 H -0.210 1.210 16 H -0.201 1.201 17 N -0.051 5.051 18 C -0.156 4.156 19 C -0.137 4.137 20 C -0.014 4.014 21 C -0.058 4.058 22 N -0.158 5.158 23 C -0.090 4.090 24 C 0.032 3.968 25 F -0.107 7.107 26 C -0.116 4.116 27 N -0.121 5.121 28 N -0.044 5.044 29 H 0.125 0.875 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.078 0.922 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.210 0.790 39 H 0.183 0.817 40 H 0.186 0.814 41 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -10.917 1.231 -17.657 20.796 hybrid contribution 1.080 0.268 0.498 1.219 sum -9.837 1.499 -17.159 19.836 Atomic orbital electron populations 1.22449 0.89920 1.05020 1.05720 1.21779 0.97197 0.98297 0.81511 0.84518 1.19969 0.82197 0.85729 0.84233 1.90788 1.36902 1.26197 1.85610 1.48112 1.49242 1.28143 1.06662 1.21943 0.93998 0.87909 1.03290 1.19397 0.94564 0.93679 0.79527 1.21341 1.04835 1.19473 1.11560 0.92413 1.24924 0.98025 0.94831 0.96133 1.69911 1.39128 1.25806 1.18313 0.86533 0.83692 0.79082 0.78029 1.20118 1.21045 1.20071 1.46847 1.17196 1.21124 1.19936 1.23347 1.02851 0.93458 0.95967 1.19879 0.95932 0.99678 0.98212 1.18517 0.95081 0.94102 0.93681 1.22850 0.95303 0.90534 0.97070 1.67730 1.29530 1.15706 1.02808 1.22939 0.89207 0.99522 0.97296 1.18685 0.90377 0.98085 0.89669 1.91536 1.66983 1.92534 1.59671 1.21730 1.00747 0.96119 0.92984 1.75236 1.19932 1.03299 1.13597 1.78276 1.03305 1.20923 1.01856 0.87487 0.90536 0.90238 0.92684 0.89927 0.92220 0.94393 0.93681 0.92470 0.79047 0.81676 0.81431 0.82601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 8.46 37.16 0.31 -1.04 16 2 C 0.12 1.50 2.84 -69.08 -0.20 1.30 16 3 H 0.14 1.51 7.40 -51.93 -0.38 1.13 16 4 C 0.50 9.15 7.14 -10.99 -0.08 9.08 16 5 O -0.52 -12.43 15.99 5.55 0.09 -12.34 16 6 N -0.59 -10.86 2.86 -182.96 -0.52 -11.38 16 7 C 0.07 0.89 8.80 59.85 0.53 1.41 16 8 C 0.25 5.97 5.16 -5.19 -0.03 5.95 16 9 C -0.53 -14.48 9.39 -34.44 -0.32 -14.80 16 10 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 11 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 12 N -0.89 -25.73 13.29 55.43 0.74 -24.99 16 13 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 14 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 N -0.26 -3.80 2.74 -55.62 -0.15 -3.95 16 18 C 0.00 -0.05 10.07 -16.70 -0.17 -0.22 16 19 C 0.00 0.00 6.99 -83.12 -0.58 -0.58 16 20 C -0.01 -0.11 5.89 -104.75 -0.62 -0.73 16 21 C 0.10 1.01 10.75 -17.20 -0.18 0.83 16 22 N -0.45 -4.72 10.35 -12.92 -0.13 -4.86 16 23 C 0.07 0.65 11.16 -17.42 -0.19 0.45 16 24 C 0.05 0.55 7.34 -39.32 -0.29 0.26 16 25 F -0.13 -1.35 17.28 2.25 0.04 -1.31 16 26 C -0.09 -1.01 9.83 -38.89 -0.38 -1.39 16 27 N -0.25 -4.20 12.25 33.06 0.40 -3.79 16 28 N -0.06 -1.11 13.14 60.35 0.79 -0.31 16 29 H 0.11 0.70 4.53 -51.93 -0.24 0.46 16 30 H 0.08 0.57 7.16 -51.93 -0.37 0.20 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.51 6.95 -51.93 -0.36 0.15 16 33 H 0.08 1.09 8.07 -51.93 -0.42 0.68 16 34 H 0.06 0.54 6.01 -51.93 -0.31 0.23 16 35 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 36 H 0.05 1.25 7.42 -51.93 -0.39 0.86 16 37 H 0.27 7.26 8.31 -40.82 -0.34 6.93 16 38 H 0.19 1.61 6.69 -52.49 -0.35 1.26 16 39 H 0.17 1.18 7.16 -52.49 -0.38 0.80 16 40 H 0.17 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.16 1.77 7.98 -52.49 -0.42 1.36 16 LS Contribution 357.81 15.07 5.39 5.39 Total: -1.00 -35.91 357.81 -5.10 -41.01 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: -4.42 Total: -2.09 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -2.30 Total: 2.19 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: 1.13 Total: -49.29 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: 0.09 Total: -12.34 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.91 -5.10 -41.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603187528.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.100 kcal (2) G-P(sol) polarization free energy of solvation -35.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds