Wall clock time and date at job start Tue Mar 31 2020 18:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 O 1.21283 * 120.00261 * 120.00003 * 4 2 1 6 6 N 1.34777 * 120.00075 * 300.00543 * 4 2 1 7 7 C 1.46498 * 119.99953 * 359.97438 * 6 4 2 8 8 C 1.46500 * 120.00084 * 180.02562 * 6 4 2 9 9 C 1.50698 * 109.47587 * 89.99577 * 8 6 4 10 10 H 1.08008 * 119.99838 * 359.97438 * 9 8 6 11 11 C 1.37869 * 120.00446 * 180.02562 * 9 8 6 12 12 N 1.31521 * 119.99830 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00307 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47310 * 59.99813 * 13 11 9 15 15 H 1.48500 * 109.47348 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47219 * 299.99773 * 13 11 9 17 17 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 18 18 C 1.35207 * 125.74880 * 325.00019 * 17 2 1 19 19 C 1.36489 * 106.04572 * 179.97438 * 18 17 2 20 20 C 1.48452 * 126.90582 * 180.02562 * 19 18 17 21 21 C 1.39325 * 120.52270 * 5.00119 * 20 19 18 22 22 N 1.31714 * 120.65366 * 180.02562 * 21 20 19 23 23 C 1.31894 * 121.87777 * 359.97438 * 22 21 20 24 24 C 1.38509 * 120.98520 * 359.97438 * 23 22 21 25 25 F 1.35096 * 120.38539 * 180.02562 * 24 23 22 26 26 C 1.38669 * 119.22992 * 359.80883 * 24 23 22 27 27 N 1.34502 * 106.18839 * 359.97438 * 19 18 17 28 28 N 1.28617 * 108.78162 * 359.73472 * 27 19 18 29 29 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 32 32 H 1.09001 * 109.47076 * 90.00302 * 7 6 4 33 33 H 1.08996 * 109.47427 * 210.00785 * 7 6 4 34 34 H 1.08999 * 109.47290 * 330.00489 * 7 6 4 35 35 H 1.08995 * 109.46789 * 209.99681 * 8 6 4 36 36 H 1.08999 * 109.46866 * 329.99207 * 8 6 4 37 37 H 0.97001 * 119.99962 * 180.02562 * 12 11 9 38 38 H 1.08002 * 126.98108 * 0.02562 * 18 17 2 39 39 H 1.07997 * 119.67054 * 359.97438 * 21 20 19 40 40 H 1.08001 * 119.50696 * 179.97438 * 23 22 21 41 41 H 1.08001 * 120.85105 * 180.23773 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7297 -1.6965 1.1191 6 7 1.7068 -0.2501 2.4545 7 6 0.8648 0.9413 2.5890 8 6 2.1956 -0.9404 3.6507 9 6 3.5230 -0.3563 4.0606 10 1 3.9591 0.4484 3.4872 11 6 4.1812 -0.8498 5.1669 12 7 3.6504 -1.8300 5.8649 13 14 5.8261 -0.1253 5.6755 14 1 5.6599 1.3202 5.9721 15 1 6.3217 -0.8252 6.8878 16 1 6.8043 -0.2947 4.5710 17 7 2.0184 -0.6906 -1.1962 18 6 1.4342 -1.7578 -1.7861 19 6 2.2177 -2.0717 -2.8587 20 6 1.9995 -3.1728 -3.8302 21 6 0.8487 -3.9556 -3.7658 22 7 0.6527 -4.9335 -4.6260 23 6 1.5254 -5.2118 -5.5750 24 6 2.6937 -4.4795 -5.7064 25 9 3.5791 -4.7747 -6.6832 26 6 2.9419 -3.4369 -4.8264 27 7 3.2265 -1.1821 -2.8594 28 7 3.0714 -0.3794 -1.8665 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 -0.1832 0.6437 2.6222 33 1 1.1227 1.4665 3.5086 34 1 1.0286 1.6001 1.7362 35 1 1.4777 -0.8152 4.4612 36 1 2.3171 -2.0016 3.4335 37 1 4.1133 -2.1770 6.6435 38 1 0.5307 -2.2595 -1.4727 39 1 0.1104 -3.7590 -3.0024 40 1 1.3261 -6.0228 -6.2598 41 1 3.8426 -2.8464 -4.9074 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603187528.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:43 Heat of formation + Delta-G solvation = 43.444593 kcal Electronic energy + Delta-G solvation = -27611.738454 eV Core-core repulsion = 23443.312544 eV Total energy + Delta-G solvation = -4168.425911 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.05154 -44.44742 -41.12626 -40.88360 -36.85642 -36.59931 -34.87571 -34.43992 -32.74635 -32.02258 -30.73238 -29.58156 -27.77839 -26.31512 -25.55647 -25.31925 -24.45321 -22.62706 -22.60379 -20.59880 -19.08125 -18.76543 -18.39720 -18.10954 -18.00349 -17.94268 -17.10485 -16.95293 -16.76520 -16.53241 -16.18021 -15.76645 -15.12754 -14.95164 -14.89364 -14.70273 -14.49475 -14.24999 -14.22888 -13.67914 -13.50720 -13.43890 -13.29988 -13.07994 -12.92385 -12.73044 -12.65370 -12.50810 -12.25062 -12.17805 -11.97666 -11.76893 -11.29335 -10.83105 -10.69191 -10.67864 -10.45767 -9.57702 -9.55226 -8.28124 -6.41963 -0.46383 -0.08821 0.46709 1.11401 1.33104 1.37106 1.43317 1.48177 1.52345 2.17766 2.36294 2.63152 2.80980 2.95328 3.02742 3.29079 3.37989 3.47223 3.53542 3.65786 3.72906 3.77578 3.94041 4.09422 4.30987 4.39112 4.52478 4.61863 4.68233 4.71272 4.72529 4.89061 4.92456 4.93863 5.00710 5.15280 5.18434 5.39575 5.47066 5.48720 5.73685 5.99381 6.53146 6.67288 6.67936 7.13084 7.29808 7.30973 8.78675 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.016277 B = 0.002575 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.834275 B =10870.853598 C =11530.521569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.128 3.872 3 H 0.156 0.844 4 C 0.489 3.511 5 O -0.588 6.588 6 N -0.593 5.593 7 C 0.062 3.938 8 C 0.261 3.739 9 C -0.547 4.547 10 H 0.051 0.949 11 C 0.012 3.988 12 N -0.925 5.925 13 Si 0.960 3.040 14 H -0.257 1.257 15 H -0.278 1.278 16 H -0.284 1.284 17 N -0.264 5.264 18 C 0.004 3.996 19 C -0.007 4.007 20 C -0.027 4.027 21 C 0.112 3.888 22 N -0.462 5.462 23 C 0.080 3.920 24 C 0.047 3.953 25 F -0.131 7.131 26 C -0.099 4.099 27 N -0.283 5.283 28 N -0.107 5.107 29 H 0.126 0.874 30 H 0.082 0.918 31 H 0.110 0.890 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.036 0.964 36 H -0.001 1.001 37 H 0.268 0.732 38 H 0.234 0.766 39 H 0.196 0.804 40 H 0.198 0.802 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.137 2.357 -18.526 23.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.023 3.977 3 H 0.173 0.827 4 C 0.274 3.726 5 O -0.468 6.468 6 N -0.323 5.323 7 C -0.080 4.080 8 C 0.140 3.860 9 C -0.585 4.585 10 H 0.069 0.931 11 C -0.188 4.188 12 N -0.564 5.564 13 Si 0.785 3.215 14 H -0.182 1.182 15 H -0.203 1.203 16 H -0.210 1.210 17 N -0.056 5.056 18 C -0.148 4.148 19 C -0.145 4.145 20 C -0.031 4.031 21 C -0.046 4.046 22 N -0.169 5.169 23 C -0.078 4.078 24 C 0.025 3.975 25 F -0.110 7.110 26 C -0.126 4.126 27 N -0.150 5.150 28 N -0.085 5.085 29 H 0.144 0.856 30 H 0.101 0.899 31 H 0.128 0.872 32 H 0.112 0.888 33 H 0.089 0.911 34 H 0.117 0.883 35 H 0.054 0.946 36 H 0.017 0.983 37 H 0.077 0.923 38 H 0.250 0.750 39 H 0.213 0.787 40 H 0.215 0.785 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -13.279 2.275 -18.418 22.819 hybrid contribution 1.769 -0.102 0.687 1.900 sum -11.510 2.172 -17.731 21.250 Atomic orbital electron populations 1.22579 0.85414 1.06329 1.08106 1.21932 1.00284 0.97563 0.77909 0.82697 1.20956 0.80904 0.85025 0.85672 1.90751 1.39901 1.29371 1.86801 1.48039 1.49607 1.29453 1.05236 1.22374 0.94944 0.86075 1.04565 1.18815 0.93783 0.91674 0.81761 1.21671 1.06164 1.19242 1.11432 0.93053 1.25766 1.01453 0.95234 0.96350 1.70015 1.40615 1.26976 1.18820 0.85579 0.79172 0.79380 0.77387 1.18158 1.20272 1.21004 1.47059 1.16751 1.21737 1.20016 1.24027 1.03514 0.92436 0.94814 1.20277 0.95456 0.99682 0.99078 1.18563 0.96163 0.94497 0.93849 1.23275 0.94899 0.89383 0.97091 1.67858 1.29788 1.15969 1.03283 1.23403 0.88131 0.99320 0.96938 1.18715 0.90902 0.98192 0.89651 1.91528 1.67200 1.92542 1.59741 1.21775 1.00663 0.96582 0.93594 1.75162 1.21337 1.04297 1.14160 1.78205 1.04970 1.22334 1.03013 0.85628 0.89869 0.87163 0.88757 0.91076 0.88311 0.94579 0.98299 0.92327 0.74974 0.78740 0.78544 0.83657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 8.46 71.98 0.61 -1.23 16 2 C 0.13 2.96 2.84 44.24 0.13 3.09 16 3 H 0.16 2.99 7.40 -2.39 -0.02 2.98 16 4 C 0.49 17.87 7.14 87.66 0.63 18.50 16 5 O -0.59 -29.13 15.99 -3.04 -0.05 -29.18 16 6 N -0.59 -21.49 2.86 -851.16 -2.43 -23.92 16 7 C 0.06 1.33 8.80 127.77 1.12 2.45 16 8 C 0.26 13.00 5.16 85.63 0.44 13.44 16 9 C -0.55 -30.32 9.39 25.60 0.24 -30.08 16 10 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 11 C 0.01 0.65 5.46 84.65 0.46 1.11 16 12 N -0.92 -54.48 13.29 21.45 0.28 -54.20 16 13 Si 0.96 44.41 29.54 68.60 2.03 46.43 16 14 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 15 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 16 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 17 N -0.26 -7.42 2.74 -329.88 -0.90 -8.32 16 18 C 0.00 0.10 10.07 83.76 0.84 0.94 16 19 C -0.01 -0.19 6.99 41.05 0.29 0.09 16 20 C -0.03 -0.60 5.89 -19.95 -0.12 -0.72 16 21 C 0.11 1.99 10.75 84.97 0.91 2.90 16 22 N -0.46 -8.58 10.35 -194.80 -2.02 -10.60 16 23 C 0.08 1.35 11.16 84.75 0.95 2.29 16 24 C 0.05 0.93 7.34 22.44 0.16 1.10 16 25 F -0.13 -2.70 17.28 44.97 0.78 -1.92 16 26 C -0.10 -2.27 9.83 22.72 0.22 -2.05 16 27 N -0.28 -9.61 12.25 -49.31 -0.60 -10.22 16 28 N -0.11 -3.71 13.14 37.02 0.49 -3.22 16 29 H 0.13 0.94 4.53 -2.39 -0.01 0.93 16 30 H 0.08 0.86 7.16 -2.39 -0.02 0.84 16 31 H 0.11 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.09 1.34 6.95 -2.39 -0.02 1.32 16 33 H 0.07 1.74 8.07 -2.39 -0.02 1.72 16 34 H 0.10 1.37 6.01 -2.39 -0.01 1.36 16 35 H 0.04 1.79 8.07 -2.39 -0.02 1.77 16 36 H 0.00 -0.07 7.42 -2.39 -0.02 -0.08 16 37 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 38 H 0.23 3.06 6.69 -2.91 -0.02 3.04 16 39 H 0.20 2.09 7.16 -2.91 -0.02 2.07 16 40 H 0.20 2.02 8.06 -2.91 -0.02 2.00 16 41 H 0.15 3.54 7.98 -2.91 -0.02 3.52 16 Total: -1.00 -84.62 357.81 5.55 -79.07 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: 1.09 Total: 4.22 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: 6.89 Total: 11.84 kcal Atomic # 7 Polarization: -105.30 SS G_CDS: -5.18 Total: -110.48 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -0.05 Total: -29.18 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.78 Total: -1.92 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -84.62 5.55 -79.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603187528.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.519 kcal (2) G-P(sol) polarization free energy of solvation -84.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds