Wall clock time and date at job start Tue Mar 31 2020 18:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47410 * 2 1 4 4 C 1.50693 * 109.47132 * 239.99451 * 2 1 3 5 5 O 1.21287 * 119.99866 * 253.92401 * 4 2 1 6 6 N 1.34772 * 120.00180 * 73.92637 * 4 2 1 7 7 C 1.46497 * 120.00070 * 3.69835 * 6 4 2 8 8 C 1.46500 * 120.00382 * 183.70138 * 6 4 2 9 9 C 1.50704 * 109.47234 * 89.99577 * 8 6 4 10 10 H 1.07998 * 120.00113 * 0.02562 * 9 8 6 11 11 C 1.37874 * 119.99658 * 180.02562 * 9 8 6 12 12 N 1.31521 * 119.99807 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 120.00494 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.46918 * 90.00011 * 13 11 9 15 15 H 1.48501 * 109.47328 * 209.99880 * 13 11 9 16 16 H 1.48497 * 109.46777 * 330.00381 * 13 11 9 17 17 N 1.46504 * 109.47040 * 119.99212 * 2 1 3 18 18 C 1.35155 * 125.73742 * 35.00154 * 17 2 1 19 19 C 1.36546 * 106.04582 * 179.97438 * 18 17 2 20 20 C 1.48356 * 126.91764 * 179.97438 * 19 18 17 21 21 C 1.39759 * 120.91024 * 359.71989 * 20 19 18 22 22 C 1.37939 * 119.05242 * 179.77901 * 21 20 19 23 23 N 1.31945 * 120.93268 * 0.50689 * 22 21 20 24 24 C 1.31931 * 122.02329 * 359.74329 * 23 22 21 25 25 C 1.38201 * 120.84169 * 359.97438 * 24 23 22 26 26 F 1.35098 * 120.51348 * 180.02562 * 25 24 23 27 27 N 1.34533 * 106.17143 * 359.97438 * 19 18 17 28 28 N 1.28615 * 108.77047 * 0.02562 * 27 19 18 29 29 H 1.08998 * 109.47065 * 175.78000 * 1 2 3 30 30 H 1.09005 * 109.46770 * 295.78032 * 1 2 3 31 31 H 1.08998 * 109.47042 * 55.77692 * 1 2 3 32 32 H 1.08995 * 109.47265 * 84.69768 * 7 6 4 33 33 H 1.09002 * 109.47818 * 204.69882 * 7 6 4 34 34 H 1.09000 * 109.47092 * 324.69997 * 7 6 4 35 35 H 1.08998 * 109.47657 * 209.99748 * 8 6 4 36 36 H 1.09000 * 109.47084 * 329.99828 * 8 6 4 37 37 H 0.96994 * 120.00526 * 180.02562 * 12 11 9 38 38 H 1.07998 * 126.97987 * 359.71747 * 18 17 2 39 39 H 1.08002 * 120.47647 * 0.02562 * 21 20 19 40 40 H 1.07999 * 119.53264 * 180.25187 * 22 21 20 41 41 H 1.08000 * 119.58223 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 8 2.5087 -1.8220 -1.1367 6 7 1.9523 -0.1109 -2.4347 7 6 1.4522 1.2622 -2.5375 8 6 2.3653 -0.8322 -3.6410 9 6 1.1839 -1.5732 -4.2125 10 1 0.2217 -1.5126 -3.7260 11 6 1.3317 -2.3286 -5.3564 12 7 0.3007 -2.9748 -5.8554 13 14 2.9960 -2.4329 -6.1984 14 1 3.7612 -3.5776 -5.6420 15 1 2.8012 -2.6301 -7.6573 16 1 3.7485 -1.1742 -5.9650 17 7 2.0183 -0.6905 1.1963 18 6 1.4342 -1.7572 1.7858 19 6 2.2184 -2.0721 2.8583 20 6 2.0005 -3.1728 3.8289 21 6 0.8983 -4.0243 3.7133 22 6 0.7356 -5.0381 4.6344 23 7 1.5970 -5.2037 5.6201 24 6 2.6479 -4.4203 5.7697 25 6 2.8900 -3.3836 4.8885 26 9 3.9686 -2.5857 5.0477 27 7 3.2283 -1.1834 2.8579 28 7 3.0757 -0.3840 1.8619 29 1 -0.3633 -1.0249 -0.0756 30 1 -0.3633 0.4470 0.9254 31 1 -0.3633 0.5780 -0.8497 32 1 2.2687 1.9609 -2.3552 33 1 1.0483 1.4281 -3.5362 34 1 0.6674 1.4195 -1.7975 35 1 2.7402 -0.1224 -4.3784 36 1 3.1521 -1.5428 -3.3880 37 1 0.4046 -3.5066 -6.6599 38 1 0.5285 -2.2565 1.4744 39 1 0.1864 -3.8930 2.9119 40 1 -0.1112 -5.7032 4.5500 41 1 3.3277 -4.5913 6.5913 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603187840.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:05 Heat of formation + Delta-G solvation = 73.698909 kcal Electronic energy + Delta-G solvation = -28003.471080 eV Core-core repulsion = 23836.357095 eV Total energy + Delta-G solvation = -4167.113985 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.93569 -43.39356 -40.14388 -39.65213 -35.59664 -35.30471 -33.84781 -32.72425 -31.27603 -30.89432 -30.25071 -28.58499 -26.55819 -25.47143 -24.49456 -23.90421 -22.97018 -21.70286 -21.29742 -19.31777 -18.04150 -17.47668 -17.31709 -17.10684 -17.04882 -16.57937 -16.04377 -15.70113 -15.40674 -15.09280 -14.82491 -14.41410 -14.32259 -14.00018 -13.78774 -13.60419 -13.50491 -13.37106 -12.73454 -12.55241 -12.46161 -12.37675 -12.14473 -12.04980 -11.76306 -11.63069 -11.19702 -11.12050 -10.97712 -10.67234 -10.31389 -10.23605 -9.92857 -9.73441 -9.41288 -9.29047 -8.75908 -8.74424 -8.05044 -6.25013 -4.25793 0.45670 0.69789 1.53575 2.05099 2.54122 2.77443 3.18568 3.24389 3.27519 3.43041 3.48214 3.77470 3.80159 4.17080 4.24356 4.25830 4.36585 4.39881 4.49658 4.55860 4.63954 4.94301 5.03942 5.08075 5.15625 5.19387 5.27571 5.33188 5.41938 5.54764 5.56281 5.67708 5.82424 5.90816 5.94892 6.31044 6.35011 6.47489 6.72236 6.97903 7.40740 7.53973 7.81063 8.24281 8.37298 8.47646 8.75203 9.34243 10.87758 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015615 B = 0.002885 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.722664 B = 9701.615458 C =10367.820623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.120 3.880 3 H 0.135 0.865 4 C 0.501 3.499 5 O -0.522 6.522 6 N -0.585 5.585 7 C 0.068 3.932 8 C 0.215 3.785 9 C -0.536 4.536 10 H 0.076 0.924 11 C 0.076 3.924 12 N -0.893 5.893 13 Si 0.875 3.125 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.265 1.265 17 N -0.265 5.265 18 C 0.012 3.988 19 C -0.011 4.011 20 C 0.018 3.982 21 C -0.134 4.134 22 C 0.091 3.909 23 N -0.461 5.461 24 C 0.074 3.926 25 C 0.070 3.930 26 F -0.111 7.111 27 N -0.239 5.239 28 N -0.074 5.074 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.053 0.947 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.036 0.964 36 H 0.039 0.961 37 H 0.267 0.733 38 H 0.194 0.806 39 H 0.148 0.852 40 H 0.168 0.832 41 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.579 5.173 17.639 18.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.015 3.985 3 H 0.153 0.847 4 C 0.284 3.716 5 O -0.397 6.397 6 N -0.316 5.316 7 C -0.076 4.076 8 C 0.095 3.905 9 C -0.574 4.574 10 H 0.094 0.906 11 C -0.128 4.128 12 N -0.531 5.531 13 Si 0.702 3.298 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.190 1.190 17 N -0.055 5.055 18 C -0.141 4.141 19 C -0.148 4.148 20 C 0.007 3.993 21 C -0.155 4.155 22 C -0.065 4.065 23 N -0.170 5.170 24 C -0.084 4.084 25 C 0.047 3.953 26 F -0.089 7.089 27 N -0.106 5.106 28 N -0.053 5.053 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.122 0.878 32 H 0.071 0.929 33 H 0.105 0.895 34 H 0.083 0.917 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.077 0.923 38 H 0.211 0.789 39 H 0.166 0.834 40 H 0.185 0.815 41 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -1.249 4.830 18.152 18.825 hybrid contribution 0.139 0.089 -1.604 1.612 sum -1.111 4.919 16.548 17.299 Atomic orbital electron populations 1.22257 0.89442 1.05527 1.04988 1.21765 0.97644 0.97921 0.81216 0.84749 1.19963 0.80731 0.86749 0.84181 1.90771 1.44640 1.19067 1.85263 1.47756 1.62621 1.14333 1.06900 1.21980 0.98645 0.82622 1.04318 1.19794 0.97138 0.92563 0.80982 1.21240 0.96184 1.29618 1.10361 0.90638 1.24832 0.96672 0.94581 0.96678 1.69875 1.30095 1.30876 1.22252 0.86868 0.84516 0.79413 0.79035 1.19814 1.20852 1.19014 1.46870 1.17195 1.21347 1.20121 1.23374 1.02619 0.92784 0.95356 1.19855 0.96432 0.99959 0.98518 1.18149 0.94854 0.93774 0.92531 1.22120 0.97113 0.95123 1.01110 1.22734 0.97902 0.95986 0.89887 1.67697 1.02434 1.25673 1.21187 1.22856 0.96203 0.90742 0.98633 1.18793 0.86606 0.92947 0.96971 1.91598 1.51153 1.71474 1.94725 1.75378 1.19563 1.02873 1.12800 1.78264 1.03428 1.21344 1.02308 0.90084 0.90133 0.87846 0.92874 0.89511 0.91741 0.94631 0.94326 0.92339 0.78914 0.83439 0.81503 0.81355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 8.47 37.16 0.31 -1.22 16 2 C 0.12 1.55 2.81 -69.08 -0.19 1.36 16 3 H 0.13 1.38 7.48 -51.93 -0.39 0.99 16 4 C 0.50 9.14 6.97 -10.99 -0.08 9.07 16 5 O -0.52 -12.11 15.88 5.55 0.09 -12.02 16 6 N -0.58 -10.61 2.86 -182.96 -0.52 -11.14 16 7 C 0.07 0.84 9.86 59.85 0.59 1.43 16 8 C 0.22 4.88 4.23 -5.19 -0.02 4.86 16 9 C -0.54 -14.27 9.94 -34.44 -0.34 -14.61 16 10 H 0.08 2.17 8.06 -52.49 -0.42 1.74 16 11 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 12 N -0.89 -26.16 13.96 55.43 0.77 -25.39 16 13 Si 0.88 20.69 27.47 -169.99 -4.67 16.02 16 14 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 16 H -0.27 -5.90 6.54 56.52 0.37 -5.53 16 17 N -0.26 -3.94 2.84 -55.62 -0.16 -4.09 16 18 C 0.01 0.16 9.92 -16.70 -0.17 -0.01 16 19 C -0.01 -0.17 7.00 -83.13 -0.58 -0.75 16 20 C 0.02 0.22 5.92 -104.53 -0.62 -0.40 16 21 C -0.13 -1.26 9.66 -39.12 -0.38 -1.64 16 22 C 0.09 0.81 11.17 -17.61 -0.20 0.61 16 23 N -0.46 -4.90 10.35 -13.29 -0.14 -5.04 16 24 C 0.07 0.77 11.16 -17.52 -0.20 0.58 16 25 C 0.07 0.87 7.32 -38.96 -0.29 0.59 16 26 F -0.11 -1.59 16.02 2.25 0.04 -1.55 16 27 N -0.24 -4.15 11.31 33.06 0.37 -3.77 16 28 N -0.07 -1.27 13.14 60.35 0.79 -0.47 16 29 H 0.08 0.82 7.38 -51.93 -0.38 0.44 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.10 0.86 5.80 -51.93 -0.30 0.56 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.09 1.12 8.03 -51.93 -0.42 0.70 16 34 H 0.06 0.58 4.56 -51.93 -0.24 0.35 16 35 H 0.04 0.77 7.13 -51.93 -0.37 0.40 16 36 H 0.04 0.96 6.80 -51.93 -0.35 0.61 16 37 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.19 1.92 6.84 -52.49 -0.36 1.56 16 39 H 0.15 1.01 7.26 -52.49 -0.38 0.63 16 40 H 0.17 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.17 1.31 8.06 -52.49 -0.42 0.88 16 LS Contribution 354.53 15.07 5.34 5.34 Total: -1.00 -36.72 354.53 -4.80 -41.52 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -4.47 Total: -1.26 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: -2.25 Total: 1.85 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: 1.12 Total: -49.91 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.09 Total: -12.02 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.67 Total: 16.02 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -36.72 -4.80 -41.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603187840.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.221 kcal (2) G-P(sol) polarization free energy of solvation -36.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds