Wall clock time and date at job start Tue Mar 31 2020 18:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47410 * 2 1 4 4 C 1.50693 * 109.47132 * 239.99451 * 2 1 3 5 5 O 1.21287 * 119.99866 * 253.92401 * 4 2 1 6 6 N 1.34772 * 120.00180 * 73.92637 * 4 2 1 7 7 C 1.46497 * 120.00070 * 3.69835 * 6 4 2 8 8 C 1.46500 * 120.00382 * 183.70138 * 6 4 2 9 9 C 1.50704 * 109.47234 * 89.99577 * 8 6 4 10 10 H 1.07998 * 120.00113 * 0.02562 * 9 8 6 11 11 C 1.37874 * 119.99658 * 180.02562 * 9 8 6 12 12 N 1.31521 * 119.99807 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 120.00494 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.46918 * 90.00011 * 13 11 9 15 15 H 1.48501 * 109.47328 * 209.99880 * 13 11 9 16 16 H 1.48497 * 109.46777 * 330.00381 * 13 11 9 17 17 N 1.46504 * 109.47040 * 119.99212 * 2 1 3 18 18 C 1.35155 * 125.73742 * 35.00154 * 17 2 1 19 19 C 1.36546 * 106.04582 * 179.97438 * 18 17 2 20 20 C 1.48356 * 126.91764 * 179.97438 * 19 18 17 21 21 C 1.39759 * 120.91024 * 359.71989 * 20 19 18 22 22 C 1.37939 * 119.05242 * 179.77901 * 21 20 19 23 23 N 1.31945 * 120.93268 * 0.50689 * 22 21 20 24 24 C 1.31931 * 122.02329 * 359.74329 * 23 22 21 25 25 C 1.38201 * 120.84169 * 359.97438 * 24 23 22 26 26 F 1.35098 * 120.51348 * 180.02562 * 25 24 23 27 27 N 1.34533 * 106.17143 * 359.97438 * 19 18 17 28 28 N 1.28615 * 108.77047 * 0.02562 * 27 19 18 29 29 H 1.08998 * 109.47065 * 175.78000 * 1 2 3 30 30 H 1.09005 * 109.46770 * 295.78032 * 1 2 3 31 31 H 1.08998 * 109.47042 * 55.77692 * 1 2 3 32 32 H 1.08995 * 109.47265 * 84.69768 * 7 6 4 33 33 H 1.09002 * 109.47818 * 204.69882 * 7 6 4 34 34 H 1.09000 * 109.47092 * 324.69997 * 7 6 4 35 35 H 1.08998 * 109.47657 * 209.99748 * 8 6 4 36 36 H 1.09000 * 109.47084 * 329.99828 * 8 6 4 37 37 H 0.96994 * 120.00526 * 180.02562 * 12 11 9 38 38 H 1.07998 * 126.97987 * 359.71747 * 18 17 2 39 39 H 1.08002 * 120.47647 * 0.02562 * 21 20 19 40 40 H 1.07999 * 119.53264 * 180.25187 * 22 21 20 41 41 H 1.08000 * 119.58223 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 8 2.5087 -1.8220 -1.1367 6 7 1.9523 -0.1109 -2.4347 7 6 1.4522 1.2622 -2.5375 8 6 2.3653 -0.8322 -3.6410 9 6 1.1839 -1.5732 -4.2125 10 1 0.2217 -1.5126 -3.7260 11 6 1.3317 -2.3286 -5.3564 12 7 0.3007 -2.9748 -5.8554 13 14 2.9960 -2.4329 -6.1984 14 1 3.7612 -3.5776 -5.6420 15 1 2.8012 -2.6301 -7.6573 16 1 3.7485 -1.1742 -5.9650 17 7 2.0183 -0.6905 1.1963 18 6 1.4342 -1.7572 1.7858 19 6 2.2184 -2.0721 2.8583 20 6 2.0005 -3.1728 3.8289 21 6 0.8983 -4.0243 3.7133 22 6 0.7356 -5.0381 4.6344 23 7 1.5970 -5.2037 5.6201 24 6 2.6479 -4.4203 5.7697 25 6 2.8900 -3.3836 4.8885 26 9 3.9686 -2.5857 5.0477 27 7 3.2283 -1.1834 2.8579 28 7 3.0757 -0.3840 1.8619 29 1 -0.3633 -1.0249 -0.0756 30 1 -0.3633 0.4470 0.9254 31 1 -0.3633 0.5780 -0.8497 32 1 2.2687 1.9609 -2.3552 33 1 1.0483 1.4281 -3.5362 34 1 0.6674 1.4195 -1.7975 35 1 2.7402 -0.1224 -4.3784 36 1 3.1521 -1.5428 -3.3880 37 1 0.4046 -3.5066 -6.6599 38 1 0.5285 -2.2565 1.4744 39 1 0.1864 -3.8930 2.9119 40 1 -0.1112 -5.7032 4.5500 41 1 3.3277 -4.5913 6.5913 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603187840.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:04 Heat of formation + Delta-G solvation = 46.933623 kcal Electronic energy + Delta-G solvation = -28004.631710 eV Core-core repulsion = 23836.357095 eV Total energy + Delta-G solvation = -4168.274615 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.91621 -44.50425 -41.11753 -40.86575 -36.94014 -36.62168 -34.87486 -34.61454 -32.28496 -31.84281 -31.25153 -30.24639 -27.72082 -26.50459 -25.52141 -25.04199 -24.30429 -22.70276 -22.56217 -20.61296 -19.18654 -19.03079 -18.54907 -18.40442 -17.90080 -17.57873 -17.20352 -16.90357 -16.69153 -16.43453 -16.05940 -15.78978 -15.15441 -14.99695 -14.88663 -14.76695 -14.46306 -14.40741 -14.37330 -13.81102 -13.59729 -13.56418 -13.23705 -13.17255 -13.07539 -12.83094 -12.62263 -12.48837 -12.25586 -12.09603 -12.04297 -11.76939 -11.36056 -10.86081 -10.78880 -10.72864 -10.10458 -9.77358 -9.56487 -8.37006 -6.41530 -0.43506 -0.07636 0.40557 1.01688 1.30321 1.34473 1.40926 1.43236 1.48894 2.12044 2.27318 2.66972 2.82871 2.94917 2.97665 3.22211 3.33609 3.42019 3.50878 3.60543 3.75249 3.75975 4.03115 4.18971 4.35482 4.42665 4.45006 4.50312 4.56135 4.61863 4.72777 4.80948 4.84808 4.88037 4.91531 5.00367 5.12587 5.31295 5.39451 5.46640 5.56359 6.17124 6.42595 6.60220 6.76908 7.03130 7.22823 7.24078 8.78785 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015615 B = 0.002885 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.722664 B = 9701.615458 C =10367.820623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.129 3.871 3 H 0.166 0.834 4 C 0.492 3.508 5 O -0.583 6.583 6 N -0.590 5.590 7 C 0.057 3.943 8 C 0.222 3.778 9 C -0.533 4.533 10 H 0.043 0.957 11 C 0.018 3.982 12 N -0.939 5.939 13 Si 0.936 3.064 14 H -0.282 1.282 15 H -0.275 1.275 16 H -0.240 1.240 17 N -0.267 5.267 18 C 0.015 3.985 19 C -0.021 4.021 20 C -0.005 4.005 21 C -0.125 4.125 22 C 0.099 3.901 23 N -0.474 5.474 24 C 0.078 3.922 25 C 0.043 3.957 26 F -0.130 7.130 27 N -0.272 5.272 28 N -0.103 5.103 29 H 0.071 0.929 30 H 0.113 0.887 31 H 0.118 0.882 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.055 0.945 36 H 0.013 0.987 37 H 0.268 0.732 38 H 0.226 0.774 39 H 0.176 0.824 40 H 0.205 0.795 41 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.623 6.197 18.150 19.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.024 3.976 3 H 0.183 0.817 4 C 0.278 3.722 5 O -0.463 6.463 6 N -0.320 5.320 7 C -0.084 4.084 8 C 0.099 3.901 9 C -0.571 4.571 10 H 0.062 0.938 11 C -0.181 4.181 12 N -0.578 5.578 13 Si 0.760 3.240 14 H -0.209 1.209 15 H -0.200 1.200 16 H -0.163 1.163 17 N -0.058 5.058 18 C -0.138 4.138 19 C -0.157 4.157 20 C -0.016 4.016 21 C -0.146 4.146 22 C -0.058 4.058 23 N -0.183 5.183 24 C -0.079 4.079 25 C 0.021 3.979 26 F -0.108 7.108 27 N -0.139 5.139 28 N -0.081 5.081 29 H 0.090 0.910 30 H 0.132 0.868 31 H 0.136 0.864 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.119 0.881 35 H 0.073 0.927 36 H 0.031 0.969 37 H 0.078 0.922 38 H 0.243 0.757 39 H 0.194 0.806 40 H 0.221 0.779 41 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -2.297 5.934 18.677 19.731 hybrid contribution 0.352 -0.288 -1.713 1.772 sum -1.945 5.646 16.964 17.985 Atomic orbital electron populations 1.22354 0.86350 1.05690 1.07357 1.21942 0.99687 0.98044 0.77887 0.81668 1.20884 0.79486 0.86231 0.85588 1.90735 1.47271 1.21927 1.86407 1.47809 1.62414 1.16147 1.05679 1.22372 1.00841 0.79767 1.05404 1.19435 0.94784 0.92683 0.83151 1.21477 0.96217 1.29547 1.09874 0.93845 1.25688 1.00248 0.94419 0.97707 1.70005 1.32387 1.32310 1.23144 0.85893 0.80091 0.80031 0.78032 1.20856 1.20024 1.16311 1.47072 1.16751 1.21724 1.20205 1.23921 1.03222 0.92183 0.94512 1.20303 0.95973 1.00080 0.99381 1.18404 0.96332 0.94263 0.92571 1.22457 0.96296 0.94096 1.01723 1.23375 0.98071 0.95717 0.88593 1.67796 1.02748 1.25741 1.22009 1.23135 0.96441 0.89786 0.98558 1.19106 0.86736 0.93910 0.98191 1.91542 1.52145 1.72189 1.94960 1.75318 1.21017 1.03998 1.13575 1.78182 1.04639 1.22265 1.03044 0.90974 0.86821 0.86398 0.89892 0.90068 0.88064 0.92724 0.96866 0.92239 0.75717 0.80636 0.77881 0.79359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 8.47 71.98 0.61 -1.82 16 2 C 0.13 3.03 2.81 44.24 0.12 3.15 16 3 H 0.17 2.81 7.48 -2.38 -0.02 2.79 16 4 C 0.49 17.57 6.97 87.66 0.61 18.18 16 5 O -0.58 -27.54 15.88 -3.05 -0.05 -27.59 16 6 N -0.59 -20.64 2.86 -851.15 -2.43 -23.07 16 7 C 0.06 1.23 9.86 127.77 1.26 2.49 16 8 C 0.22 9.95 4.23 85.63 0.36 10.31 16 9 C -0.53 -28.69 9.94 25.60 0.25 -28.44 16 10 H 0.04 2.55 8.06 -2.91 -0.02 2.53 16 11 C 0.02 1.02 5.47 84.65 0.46 1.49 16 12 N -0.94 -56.06 13.96 21.45 0.30 -55.76 16 13 Si 0.94 42.64 27.47 68.60 1.88 44.53 16 14 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 15 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 16 H -0.24 -9.83 6.54 99.48 0.65 -9.18 16 17 N -0.27 -7.61 2.84 -329.88 -0.94 -8.55 16 18 C 0.01 0.38 9.92 83.79 0.83 1.21 16 19 C -0.02 -0.61 7.00 41.03 0.29 -0.32 16 20 C -0.01 -0.13 5.92 -19.80 -0.12 -0.24 16 21 C -0.13 -2.09 9.66 22.57 0.22 -1.87 16 22 C 0.10 1.48 11.17 84.60 0.94 2.42 16 23 N -0.47 -9.21 10.35 -195.96 -2.03 -11.24 16 24 C 0.08 1.58 11.16 84.67 0.95 2.53 16 25 C 0.04 1.09 7.32 22.67 0.17 1.26 16 26 F -0.13 -3.89 16.02 44.97 0.72 -3.17 16 27 N -0.27 -9.66 11.31 -49.33 -0.56 -10.22 16 28 N -0.10 -3.51 13.14 37.02 0.49 -3.02 16 29 H 0.07 1.27 7.38 -2.39 -0.02 1.25 16 30 H 0.11 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.12 1.47 5.80 -2.39 -0.01 1.45 16 32 H 0.08 1.34 8.14 -2.39 -0.02 1.33 16 33 H 0.08 1.88 8.03 -2.39 -0.02 1.86 16 34 H 0.10 1.41 4.56 -2.39 -0.01 1.40 16 35 H 0.05 2.25 7.13 -2.39 -0.02 2.23 16 36 H 0.01 0.66 6.80 -2.39 -0.02 0.65 16 37 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 38 H 0.23 3.94 6.84 -2.91 -0.02 3.92 16 39 H 0.18 1.82 7.26 -2.91 -0.02 1.80 16 40 H 0.20 1.46 8.06 -2.91 -0.02 1.44 16 41 H 0.19 2.79 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -85.52 354.53 5.38 -80.14 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: 1.03 Total: 7.61 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: 6.96 Total: 10.34 kcal Atomic # 7 Polarization: -106.68 SS G_CDS: -5.17 Total: -111.85 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -0.05 Total: -27.59 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.72 Total: -3.17 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 1.88 Total: 44.53 kcal Total: -85.52 5.38 -80.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603187840.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.072 kcal (2) G-P(sol) polarization free energy of solvation -85.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds