Wall clock time and date at job start Tue Mar 31 2020 18:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47047 * 2 1 4 4 C 1.50707 * 109.47227 * 119.99440 * 2 1 3 5 5 O 1.21281 * 120.00123 * 120.00210 * 4 2 1 6 6 N 1.34777 * 119.99661 * 300.00360 * 4 2 1 7 7 C 1.46499 * 120.00258 * 0.02562 * 6 4 2 8 8 C 1.46501 * 119.99565 * 179.97438 * 6 4 2 9 9 C 1.50706 * 109.46945 * 90.00183 * 8 6 4 10 10 H 1.07998 * 120.00042 * 0.02562 * 9 8 6 11 11 C 1.37875 * 119.99908 * 179.97438 * 9 8 6 12 12 N 1.31513 * 120.00359 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99681 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.47086 * 90.00496 * 13 11 9 15 15 H 1.48502 * 109.46843 * 209.99753 * 13 11 9 16 16 H 1.48495 * 109.47408 * 330.00302 * 13 11 9 17 17 N 1.46501 * 109.47508 * 239.99696 * 2 1 3 18 18 C 1.35136 * 125.73384 * 324.99626 * 17 2 1 19 19 C 1.36545 * 106.04489 * 180.02562 * 18 17 2 20 20 C 1.48344 * 126.91495 * 179.74493 * 19 18 17 21 21 C 1.39359 * 119.70717 * 180.02562 * 20 19 18 22 22 C 1.38323 * 119.10390 * 179.97438 * 21 20 19 23 23 C 1.39020 * 118.49417 * 359.97438 * 22 21 20 24 24 F 1.35095 * 120.33598 * 179.97438 * 23 22 21 25 25 C 1.38418 * 119.32112 * 359.97438 * 23 22 21 26 26 N 1.31796 * 120.85795 * 359.74478 * 25 23 22 27 27 N 1.34540 * 106.17384 * 0.02562 * 19 18 17 28 28 N 1.28619 * 108.76029 * 359.97438 * 27 19 18 29 29 H 1.09000 * 109.46935 * 60.00905 * 1 2 3 30 30 H 1.09003 * 109.46671 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47198 * 300.00186 * 1 2 3 32 32 H 1.08996 * 109.47343 * 90.00172 * 7 6 4 33 33 H 1.09001 * 109.46505 * 210.00061 * 7 6 4 34 34 H 1.09002 * 109.46892 * 329.99534 * 7 6 4 35 35 H 1.09004 * 109.47002 * 209.99631 * 8 6 4 36 36 H 1.08997 * 109.47738 * 330.00389 * 8 6 4 37 37 H 0.96995 * 120.00333 * 179.97438 * 12 11 9 38 38 H 1.07998 * 126.98247 * 0.02562 * 18 17 2 39 39 H 1.08002 * 120.44874 * 359.97438 * 21 20 19 40 40 H 1.07997 * 120.75487 * 180.02562 * 22 21 20 41 41 H 1.08004 * 119.57063 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2306 5 8 2.7297 -1.6964 1.1194 6 7 1.7067 -0.2497 2.4546 7 6 0.8639 0.9410 2.5889 8 6 2.1946 -0.9406 3.6508 9 6 3.5223 -0.3574 4.0612 10 1 3.9588 0.4475 3.4886 11 6 4.1793 -0.8509 5.1684 12 7 3.6471 -1.8301 5.8667 13 14 5.8253 -0.1286 5.6766 14 1 5.6021 0.9972 6.6191 15 1 6.6414 -1.1761 6.3413 16 1 6.5408 0.3675 4.4737 17 7 2.0184 -0.6907 -1.1961 18 6 1.4344 -1.7575 -1.7852 19 6 2.2186 -2.0725 -2.8577 20 6 2.0040 -3.1769 -3.8246 21 6 2.9054 -3.3638 -4.8708 22 6 2.6935 -4.3978 -5.7649 23 6 1.5835 -5.2148 -5.5830 24 9 1.3405 -6.2352 -6.4344 25 6 0.7299 -4.9720 -4.5208 26 7 0.9599 -3.9824 -3.6812 27 7 3.2287 -1.1837 -2.8575 28 7 3.0758 -0.3842 -1.8617 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.1839 0.6427 2.6225 33 1 1.1217 1.4667 3.5084 34 1 1.0271 1.5997 1.7359 35 1 1.4765 -0.8149 4.4613 36 1 2.3155 -2.0018 3.4337 37 1 4.1095 -2.1775 6.6454 38 1 0.5309 -2.2590 -1.4716 39 1 3.7579 -2.7101 -4.9821 40 1 3.3753 -4.5671 -6.5851 41 1 -0.1335 -5.6045 -4.3755 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603188065.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:38 Heat of formation + Delta-G solvation = 70.798241 kcal Electronic energy + Delta-G solvation = -27553.036064 eV Core-core repulsion = 23385.796297 eV Total energy + Delta-G solvation = -4167.239767 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.26086 -43.28752 -40.20837 -39.51138 -35.36862 -35.22735 -32.96977 -32.85554 -32.52215 -30.80633 -29.70494 -27.84288 -26.53128 -25.23099 -24.25615 -24.20352 -23.19875 -21.65605 -21.31620 -19.26112 -18.05868 -17.68158 -17.30318 -17.11986 -16.62470 -16.37289 -16.10348 -15.65837 -15.40376 -14.93259 -14.63301 -14.46339 -14.17389 -14.03012 -13.87173 -13.74900 -13.45227 -13.26857 -12.75529 -12.58560 -12.42667 -12.25856 -11.98171 -11.74194 -11.62639 -11.29989 -11.03775 -10.97832 -10.70890 -10.61999 -10.26053 -10.25529 -9.93034 -9.86109 -9.76660 -9.20047 -8.53821 -8.52996 -7.93349 -6.14657 -4.20155 0.37362 0.80367 1.63445 2.17678 2.45467 2.93810 3.24946 3.32624 3.37094 3.48530 3.55874 3.61492 3.79316 4.21536 4.36046 4.38830 4.42954 4.49720 4.53899 4.61916 4.71205 5.04633 5.16288 5.17824 5.20511 5.27367 5.35334 5.39033 5.47523 5.59432 5.60922 5.64400 5.77436 5.95627 6.02643 6.30101 6.47499 6.80870 7.21947 7.30414 7.48377 7.80240 8.05315 8.09149 8.47313 8.60478 8.84681 9.45593 10.93602 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.016839 B = 0.002505 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.437214 B =11173.173098 C =11687.397905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.119 3.881 3 H 0.137 0.863 4 C 0.496 3.504 5 O -0.519 6.519 6 N -0.590 5.590 7 C 0.073 3.927 8 C 0.246 3.754 9 C -0.531 4.531 10 H 0.058 0.942 11 C 0.063 3.937 12 N -0.893 5.893 13 Si 0.899 3.101 14 H -0.279 1.279 15 H -0.284 1.284 16 H -0.273 1.273 17 N -0.266 5.266 18 C 0.023 3.977 19 C -0.002 4.002 20 C 0.214 3.786 21 C -0.115 4.115 22 C -0.105 4.105 23 C 0.040 3.960 24 F -0.131 7.131 25 C 0.084 3.916 26 N -0.451 5.451 27 N -0.249 5.249 28 N -0.066 5.066 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.106 0.894 32 H 0.055 0.945 33 H 0.082 0.918 34 H 0.059 0.941 35 H 0.038 0.962 36 H 0.045 0.955 37 H 0.265 0.735 38 H 0.196 0.804 39 H 0.155 0.845 40 H 0.151 0.849 41 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.990 0.771 -19.348 22.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.013 3.987 3 H 0.154 0.846 4 C 0.279 3.721 5 O -0.394 6.394 6 N -0.322 5.322 7 C -0.071 4.071 8 C 0.128 3.872 9 C -0.570 4.570 10 H 0.077 0.923 11 C -0.140 4.140 12 N -0.532 5.532 13 Si 0.726 3.274 14 H -0.205 1.205 15 H -0.210 1.210 16 H -0.198 1.198 17 N -0.056 5.056 18 C -0.130 4.130 19 C -0.139 4.139 20 C 0.076 3.924 21 C -0.136 4.136 22 C -0.132 4.132 23 C 0.018 3.982 24 F -0.110 7.110 25 C -0.075 4.075 26 N -0.160 5.160 27 N -0.118 5.118 28 N -0.046 5.046 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.125 0.875 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.078 0.922 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.213 0.787 39 H 0.173 0.827 40 H 0.168 0.832 41 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -9.950 1.223 -18.599 21.129 hybrid contribution 0.586 -0.626 -0.150 0.870 sum -9.364 0.598 -18.748 20.965 Atomic orbital electron populations 1.22445 0.89960 1.05106 1.05607 1.21758 0.97184 0.98220 0.81527 0.84555 1.19982 0.82171 0.85703 0.84241 1.90785 1.36899 1.26150 1.85614 1.48101 1.49293 1.28183 1.06662 1.21939 0.93990 0.87934 1.03240 1.19399 0.94565 0.93697 0.79554 1.21384 1.04812 1.19385 1.11435 0.92350 1.24929 0.98035 0.94848 0.96169 1.69917 1.39114 1.25888 1.18272 0.86475 0.83463 0.78731 0.78685 1.20513 1.20988 1.19785 1.46834 1.17128 1.21484 1.20170 1.23467 1.02458 0.91917 0.95178 1.19585 0.96326 0.99510 0.98470 1.18353 0.90770 0.91532 0.91761 1.22024 1.00421 0.97700 0.93428 1.21627 0.96614 0.94418 1.00517 1.18851 0.98012 0.89031 0.92256 1.91521 1.94066 1.56594 1.68803 1.22793 0.99206 0.95666 0.89875 1.67545 1.18881 1.03457 1.26134 1.75204 1.19801 1.03254 1.13506 1.78258 1.03333 1.21054 1.01930 0.90281 0.90473 0.87548 0.92719 0.89971 0.92209 0.94420 0.93679 0.92556 0.78731 0.82728 0.83156 0.81160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 8.46 37.16 0.31 -1.22 16 2 C 0.12 1.61 2.84 -69.08 -0.20 1.42 16 3 H 0.14 1.59 7.40 -51.93 -0.38 1.21 16 4 C 0.50 9.53 7.14 -10.98 -0.08 9.45 16 5 O -0.52 -12.82 15.99 5.56 0.09 -12.73 16 6 N -0.59 -11.21 2.86 -182.95 -0.52 -11.74 16 7 C 0.07 0.93 8.80 59.85 0.53 1.45 16 8 C 0.25 6.08 5.16 -5.19 -0.03 6.05 16 9 C -0.53 -14.60 9.39 -34.44 -0.32 -14.92 16 10 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 11 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 12 N -0.89 -25.99 13.29 55.43 0.74 -25.25 16 13 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 14 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 17 N -0.27 -4.15 2.74 -55.62 -0.15 -4.30 16 18 C 0.02 0.33 10.41 -16.71 -0.17 0.16 16 19 C 0.00 -0.04 7.00 -83.13 -0.58 -0.62 16 20 C 0.21 2.78 6.75 -82.94 -0.56 2.22 16 21 C -0.12 -1.24 9.74 -39.13 -0.38 -1.62 16 22 C -0.11 -0.94 10.15 -39.26 -0.40 -1.33 16 23 C 0.04 0.38 7.34 -39.23 -0.29 0.09 16 24 F -0.13 -1.23 17.28 2.25 0.04 -1.19 16 25 C 0.08 0.82 11.16 -17.50 -0.20 0.62 16 26 N -0.45 -5.48 10.09 -9.73 -0.10 -5.58 16 27 N -0.25 -4.22 12.14 33.05 0.40 -3.82 16 28 N -0.07 -1.18 13.14 60.35 0.79 -0.38 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.69 7.16 -51.93 -0.37 0.32 16 31 H 0.11 0.78 4.53 -51.93 -0.24 0.54 16 32 H 0.05 0.54 6.95 -51.93 -0.36 0.18 16 33 H 0.08 1.12 8.07 -51.93 -0.42 0.70 16 34 H 0.06 0.57 6.01 -51.93 -0.31 0.26 16 35 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 36 H 0.05 1.27 7.42 -51.93 -0.39 0.89 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.20 2.31 7.29 -52.49 -0.38 1.93 16 39 H 0.16 1.55 7.89 -52.49 -0.41 1.13 16 40 H 0.15 0.93 8.06 -52.49 -0.42 0.50 16 41 H 0.17 1.17 8.06 -52.48 -0.42 0.74 16 LS Contribution 359.39 15.07 5.42 5.42 Total: -1.00 -35.78 359.39 -5.28 -41.06 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -4.50 Total: -1.51 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -2.46 Total: 3.42 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: 1.16 Total: -51.07 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.09 Total: -12.73 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 0.04 Total: -1.19 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.78 -5.28 -41.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603188065.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.854 kcal (2) G-P(sol) polarization free energy of solvation -35.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds