Wall clock time and date at job start Tue Mar 31 2020 18:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47047 * 2 1 4 4 C 1.50707 * 109.47227 * 119.99440 * 2 1 3 5 5 O 1.21281 * 120.00123 * 120.00210 * 4 2 1 6 6 N 1.34777 * 119.99661 * 300.00360 * 4 2 1 7 7 C 1.46499 * 120.00258 * 0.02562 * 6 4 2 8 8 C 1.46501 * 119.99565 * 179.97438 * 6 4 2 9 9 C 1.50706 * 109.46945 * 90.00183 * 8 6 4 10 10 H 1.07998 * 120.00042 * 0.02562 * 9 8 6 11 11 C 1.37875 * 119.99908 * 179.97438 * 9 8 6 12 12 N 1.31513 * 120.00359 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99681 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.47086 * 90.00496 * 13 11 9 15 15 H 1.48502 * 109.46843 * 209.99753 * 13 11 9 16 16 H 1.48495 * 109.47408 * 330.00302 * 13 11 9 17 17 N 1.46501 * 109.47508 * 239.99696 * 2 1 3 18 18 C 1.35136 * 125.73384 * 324.99626 * 17 2 1 19 19 C 1.36545 * 106.04489 * 180.02562 * 18 17 2 20 20 C 1.48344 * 126.91495 * 179.74493 * 19 18 17 21 21 C 1.39359 * 119.70717 * 180.02562 * 20 19 18 22 22 C 1.38323 * 119.10390 * 179.97438 * 21 20 19 23 23 C 1.39020 * 118.49417 * 359.97438 * 22 21 20 24 24 F 1.35095 * 120.33598 * 179.97438 * 23 22 21 25 25 C 1.38418 * 119.32112 * 359.97438 * 23 22 21 26 26 N 1.31796 * 120.85795 * 359.74478 * 25 23 22 27 27 N 1.34540 * 106.17384 * 0.02562 * 19 18 17 28 28 N 1.28619 * 108.76029 * 359.97438 * 27 19 18 29 29 H 1.09000 * 109.46935 * 60.00905 * 1 2 3 30 30 H 1.09003 * 109.46671 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47198 * 300.00186 * 1 2 3 32 32 H 1.08996 * 109.47343 * 90.00172 * 7 6 4 33 33 H 1.09001 * 109.46505 * 210.00061 * 7 6 4 34 34 H 1.09002 * 109.46892 * 329.99534 * 7 6 4 35 35 H 1.09004 * 109.47002 * 209.99631 * 8 6 4 36 36 H 1.08997 * 109.47738 * 330.00389 * 8 6 4 37 37 H 0.96995 * 120.00333 * 179.97438 * 12 11 9 38 38 H 1.07998 * 126.98247 * 0.02562 * 18 17 2 39 39 H 1.08002 * 120.44874 * 359.97438 * 21 20 19 40 40 H 1.07997 * 120.75487 * 180.02562 * 22 21 20 41 41 H 1.08004 * 119.57063 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2306 5 8 2.7297 -1.6964 1.1194 6 7 1.7067 -0.2497 2.4546 7 6 0.8639 0.9410 2.5889 8 6 2.1946 -0.9406 3.6508 9 6 3.5223 -0.3574 4.0612 10 1 3.9588 0.4475 3.4886 11 6 4.1793 -0.8509 5.1684 12 7 3.6471 -1.8301 5.8667 13 14 5.8253 -0.1286 5.6766 14 1 5.6021 0.9972 6.6191 15 1 6.6414 -1.1761 6.3413 16 1 6.5408 0.3675 4.4737 17 7 2.0184 -0.6907 -1.1961 18 6 1.4344 -1.7575 -1.7852 19 6 2.2186 -2.0725 -2.8577 20 6 2.0040 -3.1769 -3.8246 21 6 2.9054 -3.3638 -4.8708 22 6 2.6935 -4.3978 -5.7649 23 6 1.5835 -5.2148 -5.5830 24 9 1.3405 -6.2352 -6.4344 25 6 0.7299 -4.9720 -4.5208 26 7 0.9599 -3.9824 -3.6812 27 7 3.2287 -1.1837 -2.8575 28 7 3.0758 -0.3842 -1.8617 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.1839 0.6427 2.6225 33 1 1.1217 1.4667 3.5084 34 1 1.0271 1.5997 1.7359 35 1 1.4765 -0.8149 4.4613 36 1 2.3155 -2.0018 3.4337 37 1 4.1095 -2.1775 6.6454 38 1 0.5309 -2.2590 -1.4716 39 1 3.7579 -2.7101 -4.9821 40 1 3.3753 -4.5671 -6.5851 41 1 -0.1335 -5.6045 -4.3755 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603188065.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:38 Heat of formation + Delta-G solvation = 45.483760 kcal Electronic energy + Delta-G solvation = -27554.133783 eV Core-core repulsion = 23385.796297 eV Total energy + Delta-G solvation = -4168.337486 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.01268 -44.44530 -41.13468 -40.88059 -36.85867 -36.56595 -34.80095 -33.80376 -33.53804 -32.00174 -30.66964 -29.58748 -27.78774 -26.34298 -25.45079 -25.16005 -24.63603 -22.68930 -22.60279 -20.61015 -19.01940 -18.76683 -18.56100 -18.40549 -18.10678 -17.47562 -17.04857 -16.88961 -16.73869 -16.49140 -16.08301 -15.46702 -15.22283 -14.97437 -14.87797 -14.77882 -14.49651 -14.26985 -14.22351 -13.68498 -13.58492 -13.46574 -13.38300 -13.04494 -12.92212 -12.75512 -12.65953 -12.51264 -12.27500 -12.14929 -11.82549 -11.73259 -11.03380 -10.93914 -10.75708 -10.69192 -10.67469 -9.56690 -9.49507 -8.27842 -6.41802 -0.49380 0.04667 0.44993 1.09793 1.33095 1.36583 1.38849 1.45335 1.51854 2.16456 2.36491 2.58699 2.68833 3.00133 3.02903 3.26424 3.34999 3.50467 3.62193 3.64849 3.76436 3.80955 4.11096 4.24964 4.31672 4.43696 4.50300 4.59034 4.64400 4.70580 4.76358 4.86100 4.89172 4.92492 5.00104 5.13016 5.17400 5.38993 5.47250 5.52298 5.73661 5.99359 6.52250 6.65122 6.67441 7.12451 7.28036 7.30895 8.79337 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.016839 B = 0.002505 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.437214 B =11173.173098 C =11687.397905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.128 3.872 3 H 0.160 0.840 4 C 0.488 3.512 5 O -0.588 6.588 6 N -0.593 5.593 7 C 0.061 3.939 8 C 0.260 3.740 9 C -0.545 4.545 10 H 0.052 0.948 11 C 0.010 3.990 12 N -0.926 5.926 13 Si 0.963 3.037 14 H -0.259 1.259 15 H -0.282 1.282 16 H -0.277 1.277 17 N -0.267 5.267 18 C 0.020 3.980 19 C -0.008 4.008 20 C 0.187 3.813 21 C -0.119 4.119 22 C -0.096 4.096 23 C 0.045 3.955 24 F -0.128 7.128 25 C 0.083 3.917 26 N -0.466 5.466 27 N -0.267 5.267 28 N -0.101 5.101 29 H 0.109 0.891 30 H 0.075 0.925 31 H 0.128 0.872 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.099 0.901 35 H 0.036 0.964 36 H -0.003 1.003 37 H 0.268 0.732 38 H 0.217 0.783 39 H 0.157 0.843 40 H 0.180 0.820 41 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.338 1.833 -20.700 24.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.023 3.977 3 H 0.178 0.822 4 C 0.274 3.726 5 O -0.468 6.468 6 N -0.323 5.323 7 C -0.080 4.080 8 C 0.139 3.861 9 C -0.583 4.583 10 H 0.070 0.930 11 C -0.189 4.189 12 N -0.565 5.565 13 Si 0.787 3.213 14 H -0.184 1.184 15 H -0.208 1.208 16 H -0.202 1.202 17 N -0.058 5.058 18 C -0.133 4.133 19 C -0.145 4.145 20 C 0.050 3.950 21 C -0.140 4.140 22 C -0.122 4.122 23 C 0.023 3.977 24 F -0.106 7.106 25 C -0.077 4.077 26 N -0.176 5.176 27 N -0.135 5.135 28 N -0.080 5.080 29 H 0.127 0.873 30 H 0.094 0.906 31 H 0.146 0.854 32 H 0.111 0.889 33 H 0.091 0.909 34 H 0.118 0.882 35 H 0.054 0.946 36 H 0.015 0.985 37 H 0.077 0.923 38 H 0.234 0.766 39 H 0.175 0.825 40 H 0.198 0.802 41 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -11.332 2.356 -19.953 23.067 hybrid contribution 0.947 -1.067 0.202 1.441 sum -10.385 1.289 -19.750 22.352 Atomic orbital electron populations 1.22557 0.85796 1.05916 1.08099 1.21937 1.00069 0.97715 0.77959 0.82239 1.20955 0.80916 0.85006 0.85702 1.90747 1.39970 1.29324 1.86807 1.48039 1.49615 1.29500 1.05192 1.22378 0.94837 0.86079 1.04676 1.18829 0.93918 0.91624 0.81708 1.21687 1.06070 1.19203 1.11379 0.92969 1.25796 1.01585 0.95221 0.96333 1.70024 1.40659 1.27063 1.18799 0.85485 0.78969 0.78482 0.78322 1.18373 1.20787 1.20221 1.47021 1.16685 1.21851 1.20290 1.23880 1.03026 0.91572 0.94818 1.20030 0.95748 0.99641 0.99096 1.18374 0.92215 0.91936 0.92503 1.22081 1.00169 0.98407 0.93342 1.21901 0.96668 0.93102 1.00483 1.18910 0.97927 0.88850 0.92004 1.91537 1.94029 1.56430 1.68647 1.23239 0.99939 0.95116 0.89360 1.67507 1.18901 1.04092 1.27062 1.75127 1.20667 1.03901 1.13840 1.78175 1.04593 1.22285 1.02938 0.87279 0.90610 0.85375 0.88945 0.90881 0.88214 0.94590 0.98456 0.92336 0.76600 0.82538 0.80224 0.78501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.37 8.46 71.98 0.61 -1.76 16 2 C 0.13 3.27 2.84 44.25 0.13 3.39 16 3 H 0.16 3.30 7.40 -2.39 -0.02 3.28 16 4 C 0.49 18.90 7.14 87.66 0.63 19.52 16 5 O -0.59 -30.44 15.99 -3.03 -0.05 -30.49 16 6 N -0.59 -22.44 2.86 -851.11 -2.43 -24.87 16 7 C 0.06 1.41 8.80 127.77 1.12 2.53 16 8 C 0.26 13.31 5.16 85.63 0.44 13.75 16 9 C -0.54 -30.67 9.39 25.60 0.24 -30.43 16 10 H 0.05 2.93 7.81 -2.91 -0.02 2.90 16 11 C 0.01 0.57 5.46 84.65 0.46 1.03 16 12 N -0.93 -55.18 13.29 21.45 0.28 -54.90 16 13 Si 0.96 44.80 29.54 68.60 2.03 46.82 16 14 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 15 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 16 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 17 N -0.27 -8.25 2.74 -329.88 -0.90 -9.16 16 18 C 0.02 0.58 10.41 83.79 0.87 1.45 16 19 C -0.01 -0.24 7.00 41.03 0.29 0.05 16 20 C 0.19 4.83 6.75 41.98 0.28 5.11 16 21 C -0.12 -2.49 9.74 22.56 0.22 -2.27 16 22 C -0.10 -1.51 10.15 22.48 0.23 -1.28 16 23 C 0.04 0.75 7.34 22.50 0.17 0.92 16 24 F -0.13 -2.08 17.28 44.97 0.78 -1.30 16 25 C 0.08 1.47 11.16 84.74 0.95 2.42 16 26 N -0.47 -10.93 10.09 -184.68 -1.86 -12.79 16 27 N -0.27 -9.28 12.14 -49.34 -0.60 -9.88 16 28 N -0.10 -3.63 13.14 37.02 0.49 -3.14 16 29 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 1.15 7.16 -2.39 -0.02 1.13 16 31 H 0.13 1.27 4.53 -2.39 -0.01 1.26 16 32 H 0.09 1.46 6.95 -2.39 -0.02 1.45 16 33 H 0.07 1.85 8.07 -2.39 -0.02 1.83 16 34 H 0.10 1.50 6.01 -2.39 -0.01 1.49 16 35 H 0.04 1.83 8.07 -2.38 -0.02 1.81 16 36 H 0.00 -0.16 7.42 -2.39 -0.02 -0.18 16 37 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 38 H 0.22 4.96 7.29 -2.91 -0.02 4.94 16 39 H 0.16 3.13 7.89 -2.91 -0.02 3.11 16 40 H 0.18 1.70 8.06 -2.91 -0.02 1.68 16 41 H 0.20 2.23 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -83.59 359.39 5.45 -78.14 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: 1.08 Total: 7.14 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: 6.63 Total: 14.44 kcal Atomic # 7 Polarization: -109.72 SS G_CDS: -5.03 Total: -114.75 kcal Atomic # 8 Polarization: -30.44 SS G_CDS: -0.05 Total: -30.49 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.78 Total: -1.30 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -83.59 5.45 -78.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603188065.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.624 kcal (2) G-P(sol) polarization free energy of solvation -83.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds