Wall clock time and date at job start Tue Mar 31 2020 18:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47291 * 2 1 4 4 O 1.42900 * 109.47455 * 120.00396 * 2 1 3 5 5 C 1.34937 * 116.99519 * 269.99781 * 4 2 1 6 6 O 1.21648 * 120.00093 * 0.02562 * 5 4 2 7 7 C 1.41780 * 119.99821 * 179.97438 * 5 4 2 8 8 C 1.35092 * 120.00104 * 173.64100 * 7 5 4 9 9 C 1.46955 * 119.99930 * 346.62510 * 8 7 5 10 10 C 1.40000 * 120.11325 * 312.94564 * 9 8 7 11 11 C 1.37652 * 119.88197 * 179.97438 * 10 9 8 12 12 C 1.39030 * 120.11782 * 0.25817 * 11 10 9 13 13 O 1.35728 * 119.88498 * 179.72438 * 12 11 10 14 14 C 1.39034 * 120.22571 * 359.48211 * 12 11 10 15 15 C 1.37647 * 120.12147 * 0.51812 * 14 12 11 16 16 C 1.50699 * 109.46776 * 239.99899 * 2 1 3 17 17 O 1.21283 * 120.00360 * 256.80224 * 16 2 1 18 18 N 1.34786 * 120.00169 * 76.80594 * 16 2 1 19 19 C 1.46495 * 119.99405 * 5.30265 * 18 16 2 20 20 C 1.46499 * 119.99895 * 185.30323 * 18 16 2 21 21 C 1.50698 * 109.46783 * 90.00382 * 20 18 16 22 22 H 1.08004 * 120.00330 * 359.97438 * 21 20 18 23 23 C 1.37883 * 119.99963 * 180.02562 * 21 20 18 24 24 N 1.31515 * 119.99422 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00210 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.46975 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.46843 * 119.99590 * 25 23 21 28 28 H 1.48498 * 109.46718 * 239.99770 * 25 23 21 29 29 H 1.09000 * 109.47211 * 295.12619 * 1 2 3 30 30 H 1.08993 * 109.47210 * 55.12725 * 1 2 3 31 31 H 1.09002 * 109.47029 * 175.13060 * 1 2 3 32 32 H 1.08006 * 120.00327 * 353.64588 * 7 5 4 33 33 H 1.07997 * 120.00111 * 166.62754 * 8 7 5 34 34 H 1.07995 * 120.05801 * 359.95794 * 10 9 8 35 35 H 1.08004 * 119.94090 * 179.97438 * 11 10 9 36 36 H 0.96698 * 114.00271 * 89.99641 * 13 12 11 37 37 H 1.08007 * 119.93560 * 180.23288 * 14 12 11 38 38 H 1.07998 * 120.06732 * 179.76189 * 15 14 12 39 39 H 1.09005 * 109.47192 * 92.53702 * 19 18 16 40 40 H 1.09004 * 109.46847 * 212.53079 * 19 18 16 41 41 H 1.08999 * 109.47835 * 332.53546 * 19 18 16 42 42 H 1.08999 * 109.46434 * 209.99300 * 20 18 16 43 43 H 1.08996 * 109.47408 * 329.99602 * 20 18 16 44 44 H 0.97009 * 119.99594 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2106 0.0788 2.2680 6 8 1.9893 1.2746 2.2373 7 6 2.6821 -0.5245 3.4613 8 6 3.0090 0.2439 4.5232 9 6 3.1606 1.6965 4.3602 10 6 3.9117 2.2092 3.2958 11 6 4.0502 3.5707 3.1472 12 6 3.4503 4.4361 4.0550 13 8 3.5946 5.7775 3.9073 14 6 2.6988 3.9322 5.1107 15 6 2.5540 2.5724 5.2683 16 6 2.0322 -0.7104 -1.2305 17 8 2.4604 -1.8419 -1.1452 18 7 2.0056 -0.0884 -2.4259 19 6 1.5983 1.3162 -2.5117 20 6 2.3841 -0.8169 -3.6393 21 6 1.1632 -1.4693 -4.2348 22 1 0.2015 -1.3532 -3.7570 23 6 1.2739 -2.2152 -5.3891 24 7 2.4450 -2.3569 -5.9706 25 14 -0.2394 -3.0245 -6.1270 26 1 -1.4250 -2.7150 -5.2881 27 1 -0.4567 -2.5071 -7.5019 28 1 -0.0394 -4.4951 -6.1773 29 1 -0.3633 0.4364 0.9304 30 1 -0.3633 0.5875 -0.8431 31 1 -0.3633 -1.0240 -0.0872 32 1 2.7802 -1.5984 3.5213 33 1 3.1588 -0.2093 5.4920 34 1 4.3819 1.5377 2.5926 35 1 4.6298 3.9672 2.3267 36 1 2.9099 6.1892 3.3624 37 1 2.2317 4.6088 5.8110 38 1 1.9733 2.1819 6.0909 39 1 2.4795 1.9546 -2.4483 40 1 1.0912 1.4901 -3.4608 41 1 0.9211 1.5490 -1.6900 42 1 2.8133 -0.1220 -4.3611 43 1 3.1195 -1.5816 -3.3895 44 1 2.5230 -2.8820 -6.7825 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729236389.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:54 Heat of formation + Delta-G solvation = -100.313881 kcal Electronic energy + Delta-G solvation = -28262.115930 eV Core-core repulsion = 24146.330987 eV Total energy + Delta-G solvation = -4115.784943 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.01291 -39.85845 -38.95979 -37.42381 -36.27658 -34.88595 -33.81951 -32.81783 -31.57704 -31.27690 -29.27149 -27.80349 -26.09349 -25.34853 -24.07241 -23.01277 -22.63426 -21.72369 -19.79509 -18.81000 -18.69350 -18.15705 -16.83422 -16.56808 -16.34851 -16.13187 -15.78191 -15.58894 -15.31578 -14.81400 -14.50219 -14.31471 -14.29778 -13.78504 -13.73589 -13.46381 -13.11535 -12.81545 -12.55013 -12.31292 -12.24312 -12.15586 -12.07656 -11.93744 -11.73909 -11.40564 -11.25484 -10.91219 -10.75214 -10.67239 -10.57998 -10.50407 -10.19370 -10.09379 -9.65566 -9.15430 -8.90470 -8.47389 -8.37007 -7.72675 -6.08058 -4.13265 0.23789 1.18286 1.33539 2.68395 2.87466 3.24315 3.27658 3.35639 3.39867 3.41235 3.95570 4.00481 4.35395 4.41125 4.59275 4.67931 4.78695 4.85912 5.01394 5.07242 5.12727 5.14651 5.26618 5.30114 5.48268 5.53024 5.59738 5.65133 5.72034 5.76599 5.85826 5.86793 6.08836 6.10309 6.19412 6.23484 6.26745 6.47403 6.53272 6.98217 7.38738 7.38906 7.45798 7.76938 7.88415 8.18016 8.28935 8.82974 8.98197 9.51958 11.00120 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.021160 B = 0.002486 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.952642 B =11260.078571 C =11851.056593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.071 3.929 3 H 0.100 0.900 4 O -0.320 6.320 5 C 0.489 3.511 6 O -0.501 6.501 7 C -0.195 4.195 8 C -0.002 4.002 9 C -0.082 4.082 10 C -0.039 4.039 11 C -0.148 4.148 12 C 0.115 3.885 13 O -0.502 6.502 14 C -0.154 4.154 15 C -0.081 4.081 16 C 0.510 3.490 17 O -0.521 6.521 18 N -0.596 5.596 19 C 0.074 3.926 20 C 0.245 3.755 21 C -0.529 4.529 22 H 0.059 0.941 23 C 0.061 3.939 24 N -0.893 5.893 25 Si 0.899 3.101 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.282 1.282 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.119 0.881 35 H 0.128 0.872 36 H 0.391 0.609 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.047 0.953 40 H 0.078 0.922 41 H 0.060 0.940 42 H 0.035 0.965 43 H 0.046 0.954 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.475 12.734 22.378 25.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.011 3.989 3 H 0.117 0.883 4 O -0.236 6.236 5 C 0.336 3.664 6 O -0.392 6.392 7 C -0.214 4.214 8 C -0.020 4.020 9 C -0.082 4.082 10 C -0.057 4.057 11 C -0.167 4.167 12 C 0.070 3.930 13 O -0.313 6.313 14 C -0.173 4.173 15 C -0.099 4.099 16 C 0.294 3.706 17 O -0.397 6.397 18 N -0.330 5.330 19 C -0.070 4.070 20 C 0.126 3.874 21 C -0.567 4.567 22 H 0.077 0.923 23 C -0.141 4.141 24 N -0.532 5.532 25 Si 0.727 3.273 26 H -0.198 1.198 27 H -0.209 1.209 28 H -0.208 1.208 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.167 0.833 33 H 0.165 0.835 34 H 0.137 0.863 35 H 0.146 0.854 36 H 0.248 0.752 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.066 0.934 40 H 0.096 0.904 41 H 0.079 0.921 42 H 0.053 0.947 43 H 0.064 0.936 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.271 12.307 22.532 25.675 hybrid contribution -1.367 -0.256 -1.006 1.717 sum -1.096 12.051 21.526 24.694 Atomic orbital electron populations 1.22158 0.92394 1.04220 1.03267 1.22222 0.95957 0.97467 0.83218 0.88276 1.86352 1.76467 1.41280 1.19457 1.20237 0.76005 0.85470 0.84645 1.90938 1.48557 1.15515 1.84168 1.21488 1.06334 1.02138 0.91416 1.22568 0.89625 0.92055 0.97761 1.18948 1.00206 0.92610 0.96430 1.21006 0.95655 0.94722 0.94327 1.21259 1.02393 0.93272 0.99733 1.18611 0.96644 0.83008 0.94716 1.84748 1.54470 1.17725 1.74339 1.21227 1.00672 0.95713 0.99639 1.21011 0.98406 0.92420 0.98085 1.19816 0.80065 0.86903 0.83815 1.90693 1.45557 1.18152 1.85283 1.48075 1.65554 1.11483 1.07889 1.21820 0.99391 0.82626 1.03127 1.19357 0.96678 0.92112 0.79205 1.21463 0.94566 1.31779 1.08940 0.92311 1.24946 0.96276 0.96101 0.96782 1.69946 1.23042 1.40457 1.19786 0.86427 0.82810 0.79322 0.78780 1.19774 1.20924 1.20826 0.91423 0.89874 0.90773 0.83289 0.83474 0.86275 0.85388 0.75220 0.85481 0.85490 0.93405 0.90357 0.92118 0.94661 0.93572 0.92695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 9.27 37.16 0.34 -2.03 16 2 C 0.07 1.18 2.07 -27.88 -0.06 1.13 16 3 H 0.10 1.52 6.09 -51.93 -0.32 1.20 16 4 O -0.32 -5.34 9.34 -47.74 -0.45 -5.78 16 5 C 0.49 6.71 6.87 32.08 0.22 6.93 16 6 O -0.50 -7.22 11.70 -19.38 -0.23 -7.45 16 7 C -0.20 -1.96 9.83 -39.35 -0.39 -2.35 16 8 C 0.00 -0.01 9.77 -37.17 -0.36 -0.38 16 9 C -0.08 -0.81 4.28 -105.05 -0.45 -1.26 16 10 C -0.04 -0.43 6.87 -39.14 -0.27 -0.70 16 11 C -0.15 -1.60 9.97 -39.50 -0.39 -1.99 16 12 C 0.11 1.16 6.71 -38.99 -0.26 0.90 16 13 O -0.50 -4.49 13.49 -18.89 -0.25 -4.75 16 14 C -0.15 -1.41 9.97 -39.50 -0.39 -1.80 16 15 C -0.08 -0.71 9.79 -39.14 -0.38 -1.10 16 16 C 0.51 11.00 6.94 -10.98 -0.08 10.93 16 17 O -0.52 -13.59 16.14 -13.77 -0.22 -13.81 16 18 N -0.60 -12.75 2.86 -182.96 -0.52 -13.27 16 19 C 0.07 1.18 10.00 59.84 0.60 1.78 16 20 C 0.25 6.41 5.21 -5.20 -0.03 6.38 16 21 C -0.53 -14.85 9.39 -34.44 -0.32 -15.17 16 22 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 23 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 24 N -0.89 -26.42 13.29 55.43 0.74 -25.69 16 25 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 26 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 27 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 28 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.08 1.12 6.42 -51.93 -0.33 0.78 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.15 1.23 8.06 -52.48 -0.42 0.81 16 33 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16 34 H 0.12 1.36 7.46 -52.49 -0.39 0.97 16 35 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 36 H 0.39 1.75 9.06 45.56 0.41 2.17 16 37 H 0.13 0.93 8.06 -52.48 -0.42 0.50 16 38 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.08 1.25 8.09 -51.93 -0.42 0.82 16 41 H 0.06 0.80 4.63 -51.93 -0.24 0.56 16 42 H 0.04 0.92 8.07 -51.93 -0.42 0.51 16 43 H 0.05 1.36 7.36 -51.93 -0.38 0.98 16 44 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 378.06 15.07 5.70 5.70 Total: -1.00 -36.28 378.06 -7.60 -43.88 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -5.02 Total: 1.63 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -2.32 Total: 2.89 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: 0.21 Total: -38.96 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -1.15 Total: -31.79 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.28 -7.60 -43.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729236389.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.437 kcal (2) G-P(sol) polarization free energy of solvation -36.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds