Wall clock time and date at job start Tue Mar 31 2020 18:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47291 * 2 1 4 4 O 1.42900 * 109.47455 * 120.00396 * 2 1 3 5 5 C 1.34937 * 116.99519 * 269.99781 * 4 2 1 6 6 O 1.21648 * 120.00093 * 0.02562 * 5 4 2 7 7 C 1.41780 * 119.99821 * 179.97438 * 5 4 2 8 8 C 1.35092 * 120.00104 * 173.64100 * 7 5 4 9 9 C 1.46955 * 119.99930 * 346.62510 * 8 7 5 10 10 C 1.40000 * 120.11325 * 312.94564 * 9 8 7 11 11 C 1.37652 * 119.88197 * 179.97438 * 10 9 8 12 12 C 1.39030 * 120.11782 * 0.25817 * 11 10 9 13 13 O 1.35728 * 119.88498 * 179.72438 * 12 11 10 14 14 C 1.39034 * 120.22571 * 359.48211 * 12 11 10 15 15 C 1.37647 * 120.12147 * 0.51812 * 14 12 11 16 16 C 1.50699 * 109.46776 * 239.99899 * 2 1 3 17 17 O 1.21283 * 120.00360 * 256.80224 * 16 2 1 18 18 N 1.34786 * 120.00169 * 76.80594 * 16 2 1 19 19 C 1.46495 * 119.99405 * 5.30265 * 18 16 2 20 20 C 1.46499 * 119.99895 * 185.30323 * 18 16 2 21 21 C 1.50698 * 109.46783 * 90.00382 * 20 18 16 22 22 H 1.08004 * 120.00330 * 359.97438 * 21 20 18 23 23 C 1.37883 * 119.99963 * 180.02562 * 21 20 18 24 24 N 1.31515 * 119.99422 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00210 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.46975 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.46843 * 119.99590 * 25 23 21 28 28 H 1.48498 * 109.46718 * 239.99770 * 25 23 21 29 29 H 1.09000 * 109.47211 * 295.12619 * 1 2 3 30 30 H 1.08993 * 109.47210 * 55.12725 * 1 2 3 31 31 H 1.09002 * 109.47029 * 175.13060 * 1 2 3 32 32 H 1.08006 * 120.00327 * 353.64588 * 7 5 4 33 33 H 1.07997 * 120.00111 * 166.62754 * 8 7 5 34 34 H 1.07995 * 120.05801 * 359.95794 * 10 9 8 35 35 H 1.08004 * 119.94090 * 179.97438 * 11 10 9 36 36 H 0.96698 * 114.00271 * 89.99641 * 13 12 11 37 37 H 1.08007 * 119.93560 * 180.23288 * 14 12 11 38 38 H 1.07998 * 120.06732 * 179.76189 * 15 14 12 39 39 H 1.09005 * 109.47192 * 92.53702 * 19 18 16 40 40 H 1.09004 * 109.46847 * 212.53079 * 19 18 16 41 41 H 1.08999 * 109.47835 * 332.53546 * 19 18 16 42 42 H 1.08999 * 109.46434 * 209.99300 * 20 18 16 43 43 H 1.08996 * 109.47408 * 329.99602 * 20 18 16 44 44 H 0.97009 * 119.99594 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2106 0.0788 2.2680 6 8 1.9893 1.2746 2.2373 7 6 2.6821 -0.5245 3.4613 8 6 3.0090 0.2439 4.5232 9 6 3.1606 1.6965 4.3602 10 6 3.9117 2.2092 3.2958 11 6 4.0502 3.5707 3.1472 12 6 3.4503 4.4361 4.0550 13 8 3.5946 5.7775 3.9073 14 6 2.6988 3.9322 5.1107 15 6 2.5540 2.5724 5.2683 16 6 2.0322 -0.7104 -1.2305 17 8 2.4604 -1.8419 -1.1452 18 7 2.0056 -0.0884 -2.4259 19 6 1.5983 1.3162 -2.5117 20 6 2.3841 -0.8169 -3.6393 21 6 1.1632 -1.4693 -4.2348 22 1 0.2015 -1.3532 -3.7570 23 6 1.2739 -2.2152 -5.3891 24 7 2.4450 -2.3569 -5.9706 25 14 -0.2394 -3.0245 -6.1270 26 1 -1.4250 -2.7150 -5.2881 27 1 -0.4567 -2.5071 -7.5019 28 1 -0.0394 -4.4951 -6.1773 29 1 -0.3633 0.4364 0.9304 30 1 -0.3633 0.5875 -0.8431 31 1 -0.3633 -1.0240 -0.0872 32 1 2.7802 -1.5984 3.5213 33 1 3.1588 -0.2093 5.4920 34 1 4.3819 1.5377 2.5926 35 1 4.6298 3.9672 2.3267 36 1 2.9099 6.1892 3.3624 37 1 2.2317 4.6088 5.8110 38 1 1.9733 2.1819 6.0909 39 1 2.4795 1.9546 -2.4483 40 1 1.0912 1.4901 -3.4608 41 1 0.9211 1.5490 -1.6900 42 1 2.8133 -0.1220 -4.3611 43 1 3.1195 -1.5816 -3.3895 44 1 2.5230 -2.8820 -6.7825 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729236389.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:53 Heat of formation + Delta-G solvation = -124.182276 kcal Electronic energy + Delta-G solvation = -28263.150941 eV Core-core repulsion = 24146.330987 eV Total energy + Delta-G solvation = -4116.819954 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.12035 -40.86235 -40.28152 -38.35527 -37.27201 -36.69248 -34.87882 -34.56573 -32.98077 -31.99393 -30.07663 -29.68747 -27.60097 -26.45174 -25.60332 -24.11098 -23.62789 -22.82077 -20.75403 -20.38422 -19.38435 -19.13068 -18.71189 -18.13847 -17.62937 -17.28216 -16.98717 -16.55922 -16.43172 -16.24799 -16.08894 -15.46952 -15.09070 -14.86702 -14.75585 -14.41547 -14.32647 -14.24937 -13.96608 -13.66583 -13.54056 -13.36922 -13.25386 -13.11375 -12.93435 -12.84499 -12.68511 -12.62229 -12.53992 -12.22631 -11.83539 -11.70623 -11.51971 -11.40000 -10.81605 -10.66657 -10.63255 -9.89100 -9.54229 -9.11420 -8.24648 -6.39598 -0.51622 0.44363 0.59331 1.36691 1.39163 1.46326 1.50461 1.60676 1.96564 2.35438 2.50932 2.71572 3.05633 3.35025 3.40458 3.65675 3.71559 3.84280 3.89307 3.96573 4.02484 4.23872 4.35709 4.46601 4.52997 4.56706 4.60983 4.62004 4.83367 4.87109 4.91028 4.93996 5.04639 5.05268 5.11222 5.18472 5.36028 5.41639 5.46876 5.50649 5.56877 5.76823 5.87182 6.01553 6.53914 6.69592 6.74702 6.84029 7.18424 7.34383 8.83290 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.021160 B = 0.002486 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.952642 B =11260.078571 C =11851.056593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.084 3.916 3 H 0.117 0.883 4 O -0.345 6.345 5 C 0.486 3.514 6 O -0.513 6.513 7 C -0.223 4.223 8 C 0.033 3.967 9 C -0.100 4.100 10 C -0.056 4.056 11 C -0.167 4.167 12 C 0.108 3.892 13 O -0.512 6.512 14 C -0.159 4.159 15 C -0.076 4.076 16 C 0.500 3.500 17 O -0.579 6.579 18 N -0.601 5.601 19 C 0.068 3.932 20 C 0.258 3.742 21 C -0.544 4.544 22 H 0.058 0.942 23 C 0.007 3.993 24 N -0.929 5.929 25 Si 0.970 3.030 26 H -0.264 1.264 27 H -0.269 1.269 28 H -0.282 1.282 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.057 0.943 32 H 0.164 0.836 33 H 0.193 0.807 34 H 0.106 0.894 35 H 0.126 0.874 36 H 0.410 0.590 37 H 0.147 0.853 38 H 0.158 0.842 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.030 0.970 43 H 0.000 1.000 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.441 14.021 24.576 28.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.025 3.975 3 H 0.134 0.866 4 O -0.261 6.261 5 C 0.335 3.665 6 O -0.404 6.404 7 C -0.242 4.242 8 C 0.015 3.985 9 C -0.100 4.100 10 C -0.074 4.074 11 C -0.186 4.186 12 C 0.064 3.936 13 O -0.325 6.325 14 C -0.177 4.177 15 C -0.094 4.094 16 C 0.287 3.713 17 O -0.459 6.459 18 N -0.333 5.333 19 C -0.073 4.073 20 C 0.137 3.863 21 C -0.582 4.582 22 H 0.076 0.924 23 C -0.192 4.192 24 N -0.568 5.568 25 Si 0.794 3.206 26 H -0.189 1.189 27 H -0.194 1.194 28 H -0.208 1.208 29 H 0.108 0.892 30 H 0.115 0.885 31 H 0.076 0.924 32 H 0.182 0.818 33 H 0.210 0.790 34 H 0.124 0.876 35 H 0.144 0.856 36 H 0.269 0.731 37 H 0.165 0.835 38 H 0.176 0.824 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.111 0.889 42 H 0.048 0.952 43 H 0.018 0.982 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.717 13.663 24.738 28.312 hybrid contribution -0.663 -0.518 -1.602 1.810 sum -2.380 13.145 23.135 26.715 Atomic orbital electron populations 1.22149 0.90439 1.03734 1.05025 1.22019 0.97096 0.97014 0.81397 0.86586 1.86362 1.77187 1.42481 1.20079 1.20868 0.75659 0.85416 0.84544 1.90924 1.49446 1.15813 1.84253 1.21589 1.09025 1.03138 0.90452 1.23015 0.85835 0.90894 0.98750 1.19234 1.00448 0.93945 0.96412 1.21031 0.96677 0.94769 0.94910 1.21370 1.03225 0.93556 1.00411 1.18760 0.96600 0.83348 0.94907 1.84695 1.55672 1.17272 1.74888 1.21525 1.00281 0.96434 0.99485 1.21376 0.97657 0.92130 0.98214 1.20738 0.78872 0.86475 0.85168 1.90649 1.48058 1.20865 1.86342 1.48070 1.65175 1.13401 1.06645 1.22125 1.01141 0.79532 1.04533 1.18856 0.95258 0.91290 0.80870 1.21720 0.94869 1.32320 1.09300 0.92405 1.25888 0.99519 0.96553 0.97225 1.70066 1.25275 1.41154 1.20324 0.85330 0.78927 0.77905 0.78430 1.18854 1.19393 1.20830 0.89179 0.88522 0.92351 0.81831 0.79018 0.87615 0.85571 0.73094 0.83482 0.82393 0.91137 0.90290 0.88940 0.95245 0.98231 0.92333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.32 9.27 71.98 0.67 -3.65 16 2 C 0.08 2.78 2.07 29.85 0.06 2.84 16 3 H 0.12 3.41 6.09 -2.39 -0.01 3.40 16 4 O -0.34 -11.56 9.34 -52.22 -0.49 -12.05 16 5 C 0.49 12.98 6.87 68.70 0.47 13.45 16 6 O -0.51 -14.20 11.70 19.35 0.23 -13.97 16 7 C -0.22 -4.14 9.83 22.42 0.22 -3.92 16 8 C 0.03 0.43 9.77 23.83 0.23 0.67 16 9 C -0.10 -1.77 4.28 -20.14 -0.09 -1.86 16 10 C -0.06 -1.21 6.87 22.56 0.15 -1.06 16 11 C -0.17 -3.56 9.97 22.32 0.22 -3.34 16 12 C 0.11 2.05 6.71 22.65 0.15 2.20 16 13 O -0.51 -8.44 13.49 -90.51 -1.22 -9.66 16 14 C -0.16 -2.49 9.97 22.32 0.22 -2.27 16 15 C -0.08 -1.09 9.79 22.56 0.22 -0.87 16 16 C 0.50 22.26 6.94 87.66 0.61 22.86 16 17 O -0.58 -31.90 16.14 15.44 0.25 -31.65 16 18 N -0.60 -26.22 2.86 -851.13 -2.43 -28.65 16 19 C 0.07 2.09 10.00 127.77 1.28 3.37 16 20 C 0.26 14.10 5.21 85.63 0.45 14.54 16 21 C -0.54 -31.23 9.39 25.60 0.24 -30.99 16 22 H 0.06 3.26 7.81 -2.91 -0.02 3.23 16 23 C 0.01 0.41 5.46 84.66 0.46 0.88 16 24 N -0.93 -56.24 13.29 21.45 0.28 -55.95 16 25 Si 0.97 44.65 29.54 68.60 2.03 46.67 16 26 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 27 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 28 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 29 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.10 2.37 6.42 -2.39 -0.02 2.35 16 31 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.16 2.48 8.06 -2.91 -0.02 2.45 16 33 H 0.19 0.75 8.06 -2.91 -0.02 0.73 16 34 H 0.11 2.49 7.46 -2.91 -0.02 2.47 16 35 H 0.13 2.55 8.06 -2.91 -0.02 2.53 16 36 H 0.41 3.05 9.06 -74.06 -0.67 2.37 16 37 H 0.15 1.66 8.06 -2.91 -0.02 1.63 16 38 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16 39 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 40 H 0.08 2.42 8.09 -2.39 -0.02 2.40 16 41 H 0.09 2.23 4.63 -2.39 -0.01 2.22 16 42 H 0.03 1.61 8.07 -2.39 -0.02 1.60 16 43 H 0.00 -0.03 7.36 -2.39 -0.02 -0.05 16 44 H 0.27 15.13 8.31 -92.70 -0.77 14.36 16 Total: -1.00 -82.59 378.06 4.58 -78.01 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: 0.36 Total: 14.40 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: 5.58 Total: 12.85 kcal Atomic # 7 Polarization: -82.46 SS G_CDS: -2.15 Total: -84.61 kcal Atomic # 8 Polarization: -66.09 SS G_CDS: -1.23 Total: -67.33 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -82.59 4.58 -78.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729236389.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.174 kcal (2) G-P(sol) polarization free energy of solvation -82.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds