Wall clock time and date at job start Tue Mar 31 2020 18:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46881 * 2 1 4 4 O 1.42899 * 109.47137 * 120.00291 * 2 1 3 5 5 C 1.34938 * 116.99895 * 270.00115 * 4 2 1 6 6 O 1.21643 * 120.00097 * 359.97438 * 5 4 2 7 7 C 1.41784 * 119.99823 * 179.97438 * 5 4 2 8 8 C 1.35087 * 119.99584 * 179.97438 * 7 5 4 9 9 C 1.46962 * 119.99722 * 179.97438 * 8 7 5 10 10 C 1.39988 * 120.11328 * 359.72690 * 9 8 7 11 11 C 1.37653 * 119.88245 * 179.74632 * 10 9 8 12 12 C 1.39035 * 120.11421 * 0.55089 * 11 10 9 13 13 O 1.35731 * 119.88633 * 179.72265 * 12 11 10 14 14 C 1.39037 * 120.23038 * 359.69928 * 12 11 10 15 15 C 1.37651 * 120.11125 * 0.02562 * 14 12 11 16 16 C 1.50701 * 109.47244 * 240.00006 * 2 1 3 17 17 O 1.21277 * 120.00211 * 256.02961 * 16 2 1 18 18 N 1.34781 * 119.99525 * 76.02808 * 16 2 1 19 19 C 1.46494 * 120.00204 * 5.36936 * 18 16 2 20 20 C 1.46499 * 119.99624 * 185.36117 * 18 16 2 21 21 C 1.50702 * 109.46860 * 90.00366 * 20 18 16 22 22 H 1.07999 * 120.00293 * 0.02562 * 21 20 18 23 23 C 1.37877 * 120.00108 * 179.97438 * 21 20 18 24 24 N 1.31515 * 120.00054 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00333 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47110 * 89.99978 * 25 23 21 27 27 H 1.48496 * 109.47469 * 210.00240 * 25 23 21 28 28 H 1.48503 * 109.47042 * 330.00459 * 25 23 21 29 29 H 1.09001 * 109.47525 * 306.13130 * 1 2 3 30 30 H 1.09006 * 109.47018 * 186.13383 * 1 2 3 31 31 H 1.09001 * 109.47354 * 66.13864 * 1 2 3 32 32 H 1.08001 * 119.99995 * 359.97438 * 7 5 4 33 33 H 1.08001 * 120.00421 * 359.97438 * 8 7 5 34 34 H 1.07996 * 120.06475 * 359.97438 * 10 9 8 35 35 H 1.07997 * 119.94379 * 180.25259 * 11 10 9 36 36 H 0.96689 * 114.00064 * 269.97700 * 13 12 11 37 37 H 1.07994 * 119.94060 * 180.02562 * 14 12 11 38 38 H 1.08000 * 120.05060 * 180.02562 * 15 14 12 39 39 H 1.08998 * 109.47479 * 84.81893 * 19 18 16 40 40 H 1.09002 * 109.47016 * 204.81979 * 19 18 16 41 41 H 1.09000 * 109.46810 * 324.81456 * 19 18 16 42 42 H 1.08994 * 109.47566 * 210.00191 * 20 18 16 43 43 H 1.09001 * 109.47661 * 330.01052 * 20 18 16 44 44 H 0.96998 * 120.00268 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2105 0.0787 2.2681 6 8 1.9901 1.2746 2.2372 7 6 2.6819 -0.5247 3.4614 8 6 2.8868 0.2287 4.5638 9 6 3.3749 -0.3967 5.8009 10 6 3.6229 -1.7739 5.8411 11 6 4.0850 -2.3540 7.0008 12 6 4.2946 -1.5764 8.1342 13 8 4.7450 -2.1541 9.2768 14 6 4.0449 -0.2091 8.1011 15 6 3.5880 0.3817 6.9448 16 6 2.0323 -0.7104 -1.2305 17 8 2.4736 -1.8367 -1.1428 18 7 1.9912 -0.0940 -2.4284 19 6 1.5691 1.3059 -2.5177 20 6 2.3689 -0.8241 -3.6410 21 6 1.1507 -1.4916 -4.2253 22 1 0.1910 -1.3826 -3.7420 23 6 1.2610 -2.2407 -5.3776 24 7 2.4294 -2.3731 -5.9665 25 14 -0.2489 -3.0687 -6.1015 26 1 -0.9075 -2.1459 -7.0606 27 1 0.1580 -4.3096 -6.8085 28 1 -1.1977 -3.4088 -5.0109 29 1 -0.3634 0.6059 0.8300 30 1 -0.3633 -1.0218 0.1098 31 1 -0.3634 0.4157 -0.9398 32 1 2.8772 -1.5865 3.4890 33 1 2.6919 1.2906 4.5361 34 1 3.4555 -2.3797 4.9628 35 1 4.2806 -3.4156 7.0317 36 1 4.0424 -2.4675 9.8625 37 1 4.2097 0.3905 8.9840 38 1 3.3948 1.4439 6.9200 39 1 2.4230 1.9559 -2.3266 40 1 1.1776 1.5044 -3.5154 41 1 0.7926 1.4992 -1.7776 42 1 2.7862 -0.1283 -4.3689 43 1 3.1136 -1.5803 -3.3929 44 1 2.5071 -2.9004 -6.7770 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729236391.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:59 Heat of formation + Delta-G solvation = -136.423139 kcal Electronic energy + Delta-G solvation = -27056.856618 eV Core-core repulsion = 22939.505860 eV Total energy + Delta-G solvation = -4117.350758 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.06474 -40.79127 -40.48401 -38.25828 -37.67409 -36.68951 -34.88284 -34.69230 -32.99399 -32.12072 -30.21753 -29.67507 -27.59089 -26.45609 -25.63761 -24.23889 -23.78834 -22.58773 -20.69278 -20.37687 -19.53598 -19.18209 -18.69616 -18.15745 -17.63098 -17.28347 -16.99212 -16.80585 -16.41758 -16.21442 -16.17838 -15.88867 -15.06544 -14.84337 -14.75750 -14.44873 -14.32829 -14.11334 -13.75035 -13.65915 -13.58709 -13.44762 -13.33980 -13.12030 -12.91673 -12.85051 -12.69187 -12.62562 -12.50631 -12.21443 -11.89335 -11.78898 -11.71691 -11.40283 -11.30382 -10.64598 -10.62377 -10.06811 -9.52764 -9.22901 -8.23303 -6.38337 -0.79263 0.35108 0.64478 1.37379 1.40177 1.40895 1.50327 1.60201 1.91367 2.35155 2.47986 2.71942 3.06704 3.24126 3.40675 3.54401 3.71132 3.74978 3.85361 3.94473 4.06226 4.16930 4.28785 4.31565 4.39656 4.53119 4.58637 4.64230 4.78231 4.84618 4.87677 4.94204 5.02651 5.06496 5.08713 5.19461 5.25926 5.35782 5.37577 5.51574 5.53787 5.76271 5.78053 6.02752 6.52499 6.66888 6.70591 6.81478 7.19146 7.35369 8.84268 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.023256 B = 0.001898 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.700001 B =14748.894426 C =15357.458509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.080 3.920 3 H 0.119 0.881 4 O -0.341 6.341 5 C 0.501 3.499 6 O -0.534 6.534 7 C -0.229 4.229 8 C 0.038 3.962 9 C -0.113 4.113 10 C -0.081 4.081 11 C -0.162 4.162 12 C 0.122 3.878 13 O -0.510 6.510 14 C -0.158 4.158 15 C -0.066 4.066 16 C 0.500 3.500 17 O -0.579 6.579 18 N -0.600 5.600 19 C 0.067 3.933 20 C 0.258 3.742 21 C -0.545 4.545 22 H 0.058 0.942 23 C 0.007 3.993 24 N -0.928 5.928 25 Si 0.970 3.030 26 H -0.262 1.262 27 H -0.282 1.282 28 H -0.271 1.271 29 H 0.094 0.906 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.415 0.585 37 H 0.152 0.848 38 H 0.157 0.843 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.030 0.970 43 H 0.000 1.000 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.499 8.232 29.919 31.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.021 3.979 3 H 0.137 0.863 4 O -0.257 6.257 5 C 0.351 3.649 6 O -0.428 6.428 7 C -0.248 4.248 8 C 0.019 3.981 9 C -0.113 4.113 10 C -0.099 4.099 11 C -0.180 4.180 12 C 0.078 3.922 13 O -0.325 6.325 14 C -0.176 4.176 15 C -0.083 4.083 16 C 0.287 3.713 17 O -0.459 6.459 18 N -0.333 5.333 19 C -0.074 4.074 20 C 0.137 3.863 21 C -0.583 4.583 22 H 0.077 0.923 23 C -0.192 4.192 24 N -0.567 5.567 25 Si 0.794 3.206 26 H -0.187 1.187 27 H -0.208 1.208 28 H -0.196 1.196 29 H 0.112 0.888 30 H 0.082 0.918 31 H 0.113 0.887 32 H 0.168 0.832 33 H 0.167 0.833 34 H 0.159 0.841 35 H 0.161 0.839 36 H 0.275 0.725 37 H 0.170 0.830 38 H 0.175 0.825 39 H 0.090 0.910 40 H 0.099 0.901 41 H 0.109 0.891 42 H 0.048 0.952 43 H 0.018 0.982 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.707 8.044 29.526 30.611 hybrid contribution -0.746 -0.876 -0.790 1.396 sum -1.453 7.168 28.736 29.652 Atomic orbital electron populations 1.22191 0.90158 1.04023 1.05251 1.22117 0.97370 0.97172 0.81220 0.86328 1.86345 1.77123 1.42090 1.20115 1.20469 0.74621 0.85175 0.84663 1.90826 1.50555 1.16462 1.84916 1.21271 1.09848 1.03030 0.90622 1.22628 0.85692 1.00208 0.89531 1.19061 1.04490 0.93983 0.93772 1.21601 0.95679 0.94189 0.98460 1.21586 1.01678 1.01588 0.93159 1.18928 0.94625 0.91479 0.87199 1.84713 1.37679 1.79261 1.30833 1.21628 1.01334 0.94539 1.00113 1.21562 0.95042 1.01057 0.90674 1.20699 0.78995 0.86401 0.85171 1.90647 1.47700 1.21144 1.86391 1.48066 1.64919 1.13819 1.06447 1.22148 1.01007 0.79583 1.04710 1.18872 0.95248 0.91302 0.80865 1.21702 0.95144 1.31996 1.09482 0.92337 1.25890 0.99504 0.96659 0.97177 1.70056 1.25376 1.41178 1.20136 0.85374 0.78757 0.78049 0.78384 1.18708 1.20778 1.19601 0.88754 0.91850 0.88687 0.83163 0.83281 0.84105 0.83917 0.72479 0.83033 0.82498 0.90981 0.90061 0.89064 0.95175 0.98235 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.42 9.17 71.98 0.66 -3.76 16 2 C 0.08 2.71 2.09 29.85 0.06 2.78 16 3 H 0.12 3.56 6.27 -2.39 -0.01 3.54 16 4 O -0.34 -11.80 9.33 -52.22 -0.49 -12.29 16 5 C 0.50 14.27 7.66 68.70 0.53 14.79 16 6 O -0.53 -15.95 15.34 19.37 0.30 -15.66 16 7 C -0.23 -4.90 9.33 22.42 0.21 -4.69 16 8 C 0.04 0.62 9.41 23.83 0.22 0.85 16 9 C -0.11 -1.60 5.87 -20.14 -0.12 -1.72 16 10 C -0.08 -1.17 9.40 22.56 0.21 -0.95 16 11 C -0.16 -2.12 9.97 22.32 0.22 -1.90 16 12 C 0.12 1.50 6.71 22.65 0.15 1.66 16 13 O -0.51 -5.26 13.49 -90.54 -1.22 -6.48 16 14 C -0.16 -1.64 9.97 22.32 0.22 -1.42 16 15 C -0.07 -0.70 9.79 22.56 0.22 -0.48 16 16 C 0.50 22.45 6.95 87.66 0.61 23.06 16 17 O -0.58 -32.07 16.13 15.51 0.25 -31.82 16 18 N -0.60 -26.31 2.86 -851.15 -2.43 -28.74 16 19 C 0.07 2.06 9.79 127.77 1.25 3.31 16 20 C 0.26 14.12 5.18 85.63 0.44 14.56 16 21 C -0.54 -31.34 9.39 25.60 0.24 -31.10 16 22 H 0.06 3.28 7.81 -2.91 -0.02 3.26 16 23 C 0.01 0.39 5.46 84.65 0.46 0.85 16 24 N -0.93 -56.26 13.29 21.45 0.28 -55.98 16 25 Si 0.97 44.73 29.54 68.60 2.03 46.75 16 26 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 27 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 28 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 29 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 31 H 0.09 2.44 6.33 -2.39 -0.02 2.42 16 32 H 0.15 2.87 6.07 -2.91 -0.02 2.85 16 33 H 0.15 2.19 7.45 -2.91 -0.02 2.17 16 34 H 0.14 1.84 6.16 -2.91 -0.02 1.82 16 35 H 0.14 1.53 8.06 -2.91 -0.02 1.50 16 36 H 0.41 0.16 9.06 -74.06 -0.67 -0.51 16 37 H 0.15 0.97 8.06 -2.91 -0.02 0.95 16 38 H 0.16 0.91 8.06 -2.91 -0.02 0.89 16 39 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.08 2.49 8.03 -2.39 -0.02 2.48 16 41 H 0.09 2.22 4.92 -2.39 -0.01 2.21 16 42 H 0.03 1.65 8.07 -2.39 -0.02 1.63 16 43 H 0.00 -0.03 7.36 -2.39 -0.02 -0.05 16 44 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -81.89 381.86 4.69 -77.20 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: 0.37 Total: 11.19 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: 5.60 Total: 15.83 kcal Atomic # 7 Polarization: -82.58 SS G_CDS: -2.15 Total: -84.72 kcal Atomic # 8 Polarization: -65.08 SS G_CDS: -1.16 Total: -66.25 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -81.89 4.69 -77.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729236391.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.224 kcal (2) G-P(sol) polarization free energy of solvation -81.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds