Wall clock time and date at job start Tue Mar 31 2020 17:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50694 * 120.00281 * 2 1 4 4 O 1.42893 * 109.47555 * 134.99846 * 3 2 1 5 5 C 1.42901 * 114.00255 * 180.02562 * 4 3 2 6 6 C 1.50704 * 109.47084 * 179.97438 * 5 4 3 7 7 O 1.20823 * 120.00074 * 0.02562 * 6 5 4 8 8 O 1.34231 * 119.99756 * 179.97438 * 6 5 4 9 9 C 1.45200 * 116.99591 * 180.02562 * 8 6 5 10 10 C 1.50707 * 109.46740 * 180.02562 * 9 8 6 11 11 O 1.21285 * 120.00045 * 354.73123 * 10 9 8 12 12 N 1.34774 * 119.99689 * 174.72993 * 10 9 8 13 13 C 1.46504 * 119.99858 * 184.43211 * 12 10 9 14 14 C 1.50699 * 109.46734 * 269.99930 * 13 12 10 15 15 H 1.08005 * 120.00470 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99917 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00167 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 120.00057 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.46898 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.46963 * 119.99883 * 18 16 14 21 21 H 1.48496 * 109.46822 * 239.99653 * 18 16 14 22 22 C 1.39930 * 120.00453 * 4.43062 * 12 10 9 23 23 C 1.38872 * 120.06914 * 66.70882 * 22 12 10 24 24 C 1.38109 * 119.92865 * 179.97438 * 23 22 12 25 25 C 1.38280 * 120.07275 * 359.97438 * 24 23 22 26 26 C 1.38289 * 120.13927 * 0.05171 * 25 24 23 27 27 C 1.38114 * 120.06901 * 359.94782 * 26 25 24 28 28 H 1.07996 * 120.00267 * 0.02562 * 1 2 3 29 29 H 1.08004 * 120.00081 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.99789 * 179.97438 * 2 1 3 31 31 H 1.09006 * 109.46996 * 14.99620 * 3 2 1 32 32 H 1.09004 * 109.47449 * 255.00336 * 3 2 1 33 33 H 1.09000 * 109.47224 * 60.00145 * 5 4 3 34 34 H 1.08999 * 109.47046 * 300.00025 * 5 4 3 35 35 H 1.08998 * 109.47229 * 60.00519 * 9 8 6 36 36 H 1.08998 * 109.47256 * 299.99981 * 9 8 6 37 37 H 1.08994 * 109.47395 * 29.99573 * 13 12 10 38 38 H 1.09001 * 109.47069 * 150.00532 * 13 12 10 39 39 H 0.96991 * 120.00637 * 180.02562 * 17 16 14 40 40 H 1.07999 * 120.03703 * 359.70435 * 23 22 12 41 41 H 1.07998 * 119.96629 * 179.97438 * 24 23 22 42 42 H 1.07997 * 119.93383 * 180.02562 * 25 24 23 43 43 H 1.07997 * 119.96184 * 179.97438 * 26 25 24 44 44 H 1.08001 * 120.03326 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 8 3.1267 1.2413 0.9526 5 6 3.9077 2.4352 1.0328 6 6 4.9933 2.2572 2.0628 7 8 5.0886 1.2146 2.6660 8 8 5.8549 3.2565 2.3094 9 6 6.8750 3.0144 3.3139 10 6 7.7425 4.2388 3.4540 11 8 7.5841 5.1827 2.7091 12 7 8.6943 4.2847 4.4071 13 6 9.4720 5.5101 4.6072 14 6 10.7014 5.4725 3.7364 15 1 10.8853 4.6209 3.0981 16 6 11.5920 6.5249 3.7553 17 7 11.3684 7.5617 4.5329 18 14 13.1163 6.4780 2.6765 19 1 13.1358 5.2112 1.9021 20 1 13.0958 7.6307 1.7405 21 1 14.3291 6.5549 3.5298 22 6 8.9398 3.1621 5.2056 23 6 9.4704 2.0095 4.6414 24 6 9.7120 0.9034 5.4323 25 6 9.4266 0.9429 6.7848 26 6 8.8976 2.0890 7.3496 27 6 8.6537 3.1985 6.5640 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8499 -0.9353 0.0004 31 1 1.3855 2.1161 0.2659 32 1 2.4755 1.4867 -0.9927 33 1 3.2678 3.2694 1.3204 34 1 4.3579 2.6408 0.0616 35 1 7.4891 2.1663 3.0111 36 1 6.3990 2.7955 4.2698 37 1 8.8638 6.3742 4.3399 38 1 9.7697 5.5847 5.6531 39 1 11.9946 8.3022 4.5460 40 1 9.6899 1.9766 3.5844 41 1 10.1243 0.0065 4.9941 42 1 9.6168 0.0768 7.4012 43 1 8.6754 2.1166 8.4061 44 1 8.2410 4.0935 7.0058 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729765743.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:36 Heat of formation + Delta-G solvation = -100.751200 kcal Electronic energy + Delta-G solvation = -27709.507473 eV Core-core repulsion = 23593.703567 eV Total energy + Delta-G solvation = -4115.803907 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.69426 -39.83166 -38.47130 -38.03860 -36.32090 -34.91289 -34.24980 -32.76905 -30.80263 -30.01995 -29.43533 -28.44591 -26.64003 -25.81967 -23.10411 -22.57046 -22.12130 -21.28692 -20.35307 -19.25105 -18.01179 -17.60307 -17.16067 -16.76174 -16.53605 -16.36498 -16.10566 -15.89087 -15.40321 -15.11417 -14.91254 -14.37546 -14.25892 -14.02640 -13.70635 -13.21958 -13.17014 -12.97106 -12.82861 -12.52340 -12.39203 -12.26694 -12.15507 -11.53016 -11.39429 -11.26569 -11.11423 -10.87302 -10.71341 -10.70974 -10.54948 -10.38358 -10.22072 -9.78856 -9.75353 -9.44946 -8.73551 -8.66925 -8.49106 -7.77989 -6.10800 -4.15216 1.49490 1.59797 1.64891 2.07571 2.14540 3.05687 3.27568 3.34828 3.38375 3.47073 3.83154 3.97407 4.40213 4.52938 4.62315 4.68798 4.73086 4.81384 4.82601 4.96124 5.09047 5.11087 5.14386 5.20343 5.24670 5.25499 5.31746 5.44891 5.63045 5.77089 5.95586 6.15726 6.19782 6.21112 6.27232 6.55434 6.61357 6.69031 6.71501 6.88033 7.13210 7.24669 7.35805 7.65014 7.84393 8.11328 8.16704 8.68681 8.88823 9.49319 10.97718 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.012076 B = 0.002730 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.082351 B =10252.592749 C =11798.088780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.151 4.151 3 C 0.088 3.912 4 O -0.365 6.365 5 C 0.074 3.926 6 C 0.461 3.539 7 O -0.488 6.488 8 O -0.329 6.329 9 C 0.053 3.947 10 C 0.515 3.485 11 O -0.503 6.503 12 N -0.555 5.555 13 C 0.250 3.750 14 C -0.526 4.526 15 H 0.059 0.941 16 C 0.062 3.938 17 N -0.894 5.894 18 Si 0.900 3.100 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.283 1.283 22 C 0.153 3.847 23 C -0.127 4.127 24 C -0.107 4.107 25 C -0.131 4.131 26 C -0.108 4.108 27 C -0.122 4.122 28 H 0.099 0.901 29 H 0.105 0.895 30 H 0.119 0.881 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.049 0.951 38 H 0.039 0.961 39 H 0.264 0.736 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.123 0.877 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.768 -14.251 -2.684 21.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.169 4.169 3 C 0.012 3.988 4 O -0.284 6.284 5 C -0.004 4.004 6 C 0.302 3.698 7 O -0.374 6.374 8 O -0.245 6.245 9 C -0.024 4.024 10 C 0.300 3.700 11 O -0.376 6.376 12 N -0.284 5.284 13 C 0.133 3.867 14 C -0.564 4.564 15 H 0.078 0.922 16 C -0.140 4.140 17 N -0.533 5.533 18 Si 0.728 3.272 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.209 1.209 22 C 0.061 3.939 23 C -0.146 4.146 24 C -0.126 4.126 25 C -0.149 4.149 26 C -0.127 4.127 27 C -0.142 4.142 28 H 0.117 0.883 29 H 0.123 0.877 30 H 0.137 0.863 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.115 0.885 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.074 0.926 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.141 0.859 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -15.689 -13.955 -2.751 21.176 hybrid contribution 1.089 0.151 -0.549 1.229 sum -14.599 -13.804 -3.301 20.361 Atomic orbital electron populations 1.23857 0.95480 1.02415 0.99771 1.22702 0.95614 0.98118 1.00436 1.21648 0.88401 0.96452 0.92273 1.87978 1.44616 1.34811 1.60992 1.21634 0.91673 0.89420 0.97664 1.23164 0.81959 0.81884 0.82838 1.90700 1.70887 1.27923 1.47918 1.86488 1.40178 1.42062 1.55738 1.22935 0.89161 0.98625 0.91724 1.19718 0.81063 0.87919 0.81252 1.90737 1.68919 1.37318 1.40663 1.45888 1.35481 1.14285 1.32786 1.19509 0.90184 0.79469 0.97563 1.21379 1.05879 1.04512 1.24674 0.92242 1.24915 0.98354 0.95053 0.95683 1.69926 1.37056 1.07718 1.38559 0.86404 0.82373 0.78167 0.80287 1.19754 1.20787 1.20909 1.17792 0.97775 0.87473 0.90886 1.21375 0.99144 0.93379 1.00725 1.20983 0.99790 0.97915 0.93891 1.21095 1.00554 0.98189 0.95111 1.20990 0.99270 0.92944 0.99502 1.21307 1.00716 0.99058 0.93128 0.88318 0.87650 0.86342 0.92154 0.91654 0.88492 0.88414 0.88212 0.88482 0.93303 0.94259 0.92647 0.85874 0.85959 0.86225 0.85926 0.85577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.08 14.31 29.02 0.42 -0.67 16 2 C -0.15 -1.14 9.89 -36.03 -0.36 -1.50 16 3 C 0.09 0.68 6.35 36.00 0.23 0.91 16 4 O -0.36 -4.13 9.86 -55.18 -0.54 -4.68 16 5 C 0.07 0.75 6.53 36.01 0.24 0.98 16 6 C 0.46 6.63 8.03 36.01 0.29 6.92 16 7 O -0.49 -8.31 16.25 -25.47 -0.41 -8.73 16 8 O -0.33 -5.38 9.76 -45.89 -0.45 -5.82 16 9 C 0.05 0.89 4.61 36.01 0.17 1.05 16 10 C 0.51 10.85 7.62 -10.98 -0.08 10.76 16 11 O -0.50 -12.55 16.13 -14.05 -0.23 -12.78 16 12 N -0.55 -11.85 2.51 -114.73 -0.29 -12.14 16 13 C 0.25 6.43 5.07 -5.19 -0.03 6.41 16 14 C -0.53 -14.78 9.39 -34.44 -0.32 -15.10 16 15 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 17 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 18 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 19 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 C 0.15 2.76 4.43 -83.69 -0.37 2.38 16 23 C -0.13 -2.05 8.45 -39.39 -0.33 -2.38 16 24 C -0.11 -1.44 10.04 -39.61 -0.40 -1.84 16 25 C -0.13 -1.63 10.04 -39.55 -0.40 -2.03 16 26 C -0.11 -1.42 10.04 -39.61 -0.40 -1.82 16 27 C -0.12 -1.94 9.64 -39.39 -0.38 -2.32 16 28 H 0.10 0.49 7.90 -52.49 -0.41 0.08 16 29 H 0.11 0.52 8.06 -52.48 -0.42 0.09 16 30 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 31 H 0.06 0.37 7.86 -51.93 -0.41 -0.04 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.10 1.56 6.96 -51.93 -0.36 1.20 16 36 H 0.10 1.49 8.02 -51.93 -0.42 1.08 16 37 H 0.05 1.39 7.49 -51.93 -0.39 1.00 16 38 H 0.04 1.03 7.82 -51.93 -0.41 0.62 16 39 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.12 1.99 7.89 -52.49 -0.41 1.57 16 41 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 42 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 43 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 44 H 0.13 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 391.39 15.07 5.90 5.90 Total: -1.00 -35.09 391.39 -8.30 -43.38 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -6.16 Total: 0.11 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -1.83 Total: 3.42 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.45 Total: -37.61 kcal Atomic # 8 Polarization: -30.37 SS G_CDS: -1.63 Total: -32.01 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.09 -8.30 -43.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729765743.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.369 kcal (2) G-P(sol) polarization free energy of solvation -35.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds