Wall clock time and date at job start Tue Mar 31 2020 17:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50694 * 120.00281 * 2 1 4 4 O 1.42893 * 109.47555 * 134.99846 * 3 2 1 5 5 C 1.42901 * 114.00255 * 180.02562 * 4 3 2 6 6 C 1.50704 * 109.47084 * 179.97438 * 5 4 3 7 7 O 1.20823 * 120.00074 * 0.02562 * 6 5 4 8 8 O 1.34231 * 119.99756 * 179.97438 * 6 5 4 9 9 C 1.45200 * 116.99591 * 180.02562 * 8 6 5 10 10 C 1.50707 * 109.46740 * 180.02562 * 9 8 6 11 11 O 1.21285 * 120.00045 * 354.73123 * 10 9 8 12 12 N 1.34774 * 119.99689 * 174.72993 * 10 9 8 13 13 C 1.46504 * 119.99858 * 184.43211 * 12 10 9 14 14 C 1.50699 * 109.46734 * 269.99930 * 13 12 10 15 15 H 1.08005 * 120.00470 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99917 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00167 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 120.00057 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.46898 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.46963 * 119.99883 * 18 16 14 21 21 H 1.48496 * 109.46822 * 239.99653 * 18 16 14 22 22 C 1.39930 * 120.00453 * 4.43062 * 12 10 9 23 23 C 1.38872 * 120.06914 * 66.70882 * 22 12 10 24 24 C 1.38109 * 119.92865 * 179.97438 * 23 22 12 25 25 C 1.38280 * 120.07275 * 359.97438 * 24 23 22 26 26 C 1.38289 * 120.13927 * 0.05171 * 25 24 23 27 27 C 1.38114 * 120.06901 * 359.94782 * 26 25 24 28 28 H 1.07996 * 120.00267 * 0.02562 * 1 2 3 29 29 H 1.08004 * 120.00081 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.99789 * 179.97438 * 2 1 3 31 31 H 1.09006 * 109.46996 * 14.99620 * 3 2 1 32 32 H 1.09004 * 109.47449 * 255.00336 * 3 2 1 33 33 H 1.09000 * 109.47224 * 60.00145 * 5 4 3 34 34 H 1.08999 * 109.47046 * 300.00025 * 5 4 3 35 35 H 1.08998 * 109.47229 * 60.00519 * 9 8 6 36 36 H 1.08998 * 109.47256 * 299.99981 * 9 8 6 37 37 H 1.08994 * 109.47395 * 29.99573 * 13 12 10 38 38 H 1.09001 * 109.47069 * 150.00532 * 13 12 10 39 39 H 0.96991 * 120.00637 * 180.02562 * 17 16 14 40 40 H 1.07999 * 120.03703 * 359.70435 * 23 22 12 41 41 H 1.07998 * 119.96629 * 179.97438 * 24 23 22 42 42 H 1.07997 * 119.93383 * 180.02562 * 25 24 23 43 43 H 1.07997 * 119.96184 * 179.97438 * 26 25 24 44 44 H 1.08001 * 120.03326 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 8 3.1267 1.2413 0.9526 5 6 3.9077 2.4352 1.0328 6 6 4.9933 2.2572 2.0628 7 8 5.0886 1.2146 2.6660 8 8 5.8549 3.2565 2.3094 9 6 6.8750 3.0144 3.3139 10 6 7.7425 4.2388 3.4540 11 8 7.5841 5.1827 2.7091 12 7 8.6943 4.2847 4.4071 13 6 9.4720 5.5101 4.6072 14 6 10.7014 5.4725 3.7364 15 1 10.8853 4.6209 3.0981 16 6 11.5920 6.5249 3.7553 17 7 11.3684 7.5617 4.5329 18 14 13.1163 6.4780 2.6765 19 1 13.1358 5.2112 1.9021 20 1 13.0958 7.6307 1.7405 21 1 14.3291 6.5549 3.5298 22 6 8.9398 3.1621 5.2056 23 6 9.4704 2.0095 4.6414 24 6 9.7120 0.9034 5.4323 25 6 9.4266 0.9429 6.7848 26 6 8.8976 2.0890 7.3496 27 6 8.6537 3.1985 6.5640 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8499 -0.9353 0.0004 31 1 1.3855 2.1161 0.2659 32 1 2.4755 1.4867 -0.9927 33 1 3.2678 3.2694 1.3204 34 1 4.3579 2.6408 0.0616 35 1 7.4891 2.1663 3.0111 36 1 6.3990 2.7955 4.2698 37 1 8.8638 6.3742 4.3399 38 1 9.7697 5.5847 5.6531 39 1 11.9946 8.3022 4.5460 40 1 9.6899 1.9766 3.5844 41 1 10.1243 0.0065 4.9941 42 1 9.6168 0.0768 7.4012 43 1 8.6754 2.1166 8.4061 44 1 8.2410 4.0935 7.0058 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729765743.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:35 Heat of formation + Delta-G solvation = -120.605792 kcal Electronic energy + Delta-G solvation = -27710.368433 eV Core-core repulsion = 23593.703567 eV Total energy + Delta-G solvation = -4116.664866 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.99187 -41.21312 -39.59337 -39.09350 -37.57364 -36.57550 -34.84893 -34.80654 -31.99585 -31.37102 -30.74857 -29.66770 -28.27974 -26.53647 -24.97805 -23.87399 -23.37428 -22.40649 -20.93616 -20.72828 -19.11320 -18.96058 -18.70814 -18.20620 -17.63092 -17.53689 -17.18709 -17.11546 -16.92040 -16.35357 -16.20549 -15.79874 -15.43561 -15.28971 -14.75024 -14.57621 -14.34338 -14.32446 -13.98869 -13.85270 -13.64258 -13.42117 -13.22949 -13.18641 -13.06048 -12.70314 -12.48496 -12.22215 -12.16071 -12.02504 -11.91206 -11.74608 -11.69239 -11.11932 -11.05027 -10.68930 -10.28028 -10.21853 -9.86752 -9.31594 -8.27250 -6.41260 0.29241 0.46518 0.82142 0.95593 1.31678 1.34134 1.36238 1.42126 1.49656 2.10827 2.36633 2.81200 2.95956 3.03210 3.27194 3.48293 3.84353 3.88462 4.03599 4.05033 4.08567 4.11857 4.15055 4.22204 4.29383 4.45031 4.56272 4.60376 4.61126 4.67609 4.95829 4.98825 5.04567 5.10611 5.13150 5.33816 5.49993 5.59347 5.61729 5.66226 5.68157 5.69593 5.96573 5.97392 6.01528 6.45088 6.56302 6.64818 7.05507 7.29040 8.80600 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.012076 B = 0.002730 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.082351 B =10252.592749 C =11798.088780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.177 4.177 3 C 0.084 3.916 4 O -0.394 6.394 5 C 0.078 3.922 6 C 0.460 3.540 7 O -0.518 6.518 8 O -0.342 6.342 9 C 0.069 3.931 10 C 0.510 3.490 11 O -0.555 6.555 12 N -0.554 5.554 13 C 0.267 3.733 14 C -0.542 4.542 15 H 0.051 0.949 16 C 0.010 3.990 17 N -0.925 5.925 18 Si 0.968 3.032 19 H -0.269 1.269 20 H -0.278 1.278 21 H -0.269 1.269 22 C 0.114 3.886 23 C -0.140 4.140 24 C -0.104 4.104 25 C -0.118 4.118 26 C -0.103 4.103 27 C -0.136 4.136 28 H 0.112 0.888 29 H 0.115 0.885 30 H 0.108 0.892 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.010 0.990 38 H 0.029 0.971 39 H 0.269 0.731 40 H 0.114 0.886 41 H 0.153 0.847 42 H 0.161 0.839 43 H 0.156 0.844 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.902 -16.551 -2.496 23.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.195 4.195 3 C 0.009 3.991 4 O -0.314 6.314 5 C 0.001 3.999 6 C 0.303 3.697 7 O -0.406 6.406 8 O -0.258 6.258 9 C -0.008 4.008 10 C 0.298 3.702 11 O -0.433 6.433 12 N -0.282 5.282 13 C 0.147 3.853 14 C -0.580 4.580 15 H 0.070 0.930 16 C -0.189 4.189 17 N -0.564 5.564 18 Si 0.792 3.208 19 H -0.193 1.193 20 H -0.203 1.203 21 H -0.194 1.194 22 C 0.023 3.977 23 C -0.160 4.160 24 C -0.122 4.122 25 C -0.135 4.135 26 C -0.121 4.121 27 C -0.156 4.156 28 H 0.130 0.870 29 H 0.134 0.866 30 H 0.127 0.873 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.028 0.972 38 H 0.047 0.953 39 H 0.078 0.922 40 H 0.133 0.867 41 H 0.171 0.829 42 H 0.178 0.822 43 H 0.173 0.827 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -15.838 -16.299 -2.542 22.868 hybrid contribution 1.051 0.770 -0.528 1.406 sum -14.787 -15.529 -3.071 21.662 Atomic orbital electron populations 1.24075 0.95017 1.03569 0.97546 1.22760 0.96277 0.97936 1.02549 1.21867 0.87899 0.97042 0.92328 1.87935 1.45682 1.35506 1.62321 1.21826 0.90870 0.89937 0.97272 1.24087 0.81828 0.80819 0.82933 1.90676 1.71680 1.28929 1.49334 1.86503 1.40427 1.43282 1.55601 1.22665 0.89142 0.96124 0.92870 1.20429 0.80949 0.88604 0.80242 1.90691 1.70403 1.39458 1.42709 1.45673 1.34976 1.14175 1.33426 1.18946 0.89429 0.80531 0.96353 1.21603 1.06895 1.04517 1.24995 0.93026 1.25819 1.01549 0.94559 0.96970 1.70032 1.38306 1.08332 1.39772 0.85360 0.78654 0.78234 0.78545 1.19308 1.20344 1.19432 1.18061 1.00976 0.87039 0.91587 1.21424 0.99826 0.93860 1.00849 1.21360 0.98745 0.97773 0.94326 1.21600 0.98040 0.98946 0.94953 1.21380 0.97944 0.91970 1.00796 1.21417 1.01400 1.00227 0.92527 0.87012 0.86649 0.87349 0.90421 0.90152 0.85748 0.85820 0.86977 0.87003 0.97188 0.95300 0.92222 0.86746 0.82945 0.82187 0.82681 0.86207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.72 14.31 67.78 0.97 -0.75 16 2 C -0.18 -2.51 9.89 25.65 0.25 -2.25 16 3 C 0.08 1.15 6.35 71.23 0.45 1.60 16 4 O -0.39 -8.49 9.86 -129.90 -1.28 -9.77 16 5 C 0.08 1.46 6.53 71.24 0.47 1.93 16 6 C 0.46 13.07 8.03 71.24 0.57 13.64 16 7 O -0.52 -17.57 16.25 28.40 0.46 -17.11 16 8 O -0.34 -11.32 9.76 -45.09 -0.44 -11.76 16 9 C 0.07 2.37 4.61 71.24 0.33 2.70 16 10 C 0.51 22.68 7.62 87.66 0.67 23.35 16 11 O -0.55 -29.49 16.13 15.70 0.25 -29.23 16 12 N -0.55 -25.01 2.51 -635.30 -1.59 -26.60 16 13 C 0.27 14.62 5.07 85.63 0.43 15.05 16 14 C -0.54 -31.68 9.39 25.60 0.24 -31.44 16 15 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 16 C 0.01 0.60 5.46 84.66 0.46 1.06 16 17 N -0.92 -55.75 13.29 21.45 0.28 -55.47 16 18 Si 0.97 45.30 29.54 68.60 2.03 47.32 16 19 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 20 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 22 C 0.11 4.19 4.43 38.15 0.17 4.36 16 23 C -0.14 -4.48 8.45 22.39 0.19 -4.30 16 24 C -0.10 -2.50 10.04 22.25 0.22 -2.28 16 25 C -0.12 -2.45 10.04 22.29 0.22 -2.23 16 26 C -0.10 -2.41 10.04 22.25 0.22 -2.19 16 27 C -0.14 -4.30 9.64 22.39 0.22 -4.08 16 28 H 0.11 0.85 7.90 -2.91 -0.02 0.83 16 29 H 0.12 0.93 8.06 -2.91 -0.02 0.90 16 30 H 0.11 1.69 8.06 -2.91 -0.02 1.66 16 31 H 0.08 0.77 7.86 -2.38 -0.02 0.75 16 32 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.11 3.57 6.96 -2.39 -0.02 3.55 16 36 H 0.11 3.50 8.02 -2.39 -0.02 3.48 16 37 H 0.01 0.62 7.49 -2.39 -0.02 0.60 16 38 H 0.03 1.61 7.82 -2.39 -0.02 1.60 16 39 H 0.27 15.11 8.31 -92.72 -0.77 14.33 16 40 H 0.11 3.76 7.89 -2.91 -0.02 3.74 16 41 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 42 H 0.16 2.13 8.06 -2.91 -0.02 2.10 16 43 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 44 H 0.12 3.81 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -80.33 391.39 6.79 -73.54 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 0.99 Total: 14.89 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: 6.09 Total: 14.19 kcal Atomic # 7 Polarization: -80.76 SS G_CDS: -1.31 Total: -82.07 kcal Atomic # 8 Polarization: -66.87 SS G_CDS: -1.01 Total: -67.87 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -80.33 6.79 -73.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729765743.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.066 kcal (2) G-P(sol) polarization free energy of solvation -80.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds