Wall clock time and date at job start Tue Mar 31 2020 18:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47221 * 2 1 4 4 O 1.45199 * 109.47411 * 119.99790 * 2 1 3 5 5 C 1.34223 * 117.00285 * 270.00470 * 4 2 1 6 6 O 1.20829 * 120.00008 * 359.97438 * 5 4 2 7 7 C 1.50705 * 120.00146 * 179.97438 * 5 4 2 8 8 C 1.50707 * 109.46950 * 179.97438 * 7 5 4 9 9 C 1.38302 * 119.93031 * 89.99945 * 8 7 5 10 10 C 1.38101 * 120.06877 * 180.02562 * 9 8 7 11 11 C 1.38876 * 119.92956 * 359.97438 * 10 9 8 12 12 O 1.35750 * 120.06861 * 180.02562 * 11 10 9 13 13 C 1.34828 * 117.00075 * 5.53840 * 12 11 10 14 14 H 1.08003 * 120.00029 * 354.94359 * 13 12 11 15 15 C 1.38659 * 120.00122 * 174.94542 * 13 12 11 16 16 N 1.31558 * 119.99705 * 180.02562 * 15 13 12 17 17 Si 1.86795 * 120.00035 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47181 * 89.99980 * 17 15 13 19 19 H 1.48498 * 109.47260 * 210.00361 * 17 15 13 20 20 H 1.48502 * 109.47130 * 330.00179 * 17 15 13 21 21 C 1.38880 * 119.86555 * 0.27954 * 11 10 9 22 22 C 1.38105 * 119.92781 * 359.48865 * 21 11 10 23 23 C 1.50698 * 109.47443 * 240.00224 * 2 1 3 24 24 O 1.21286 * 119.99892 * 245.00299 * 23 2 1 25 25 N 1.34768 * 120.00166 * 64.99260 * 23 2 1 26 26 C 1.46504 * 120.00060 * 180.02562 * 25 23 2 27 27 C 1.53006 * 117.49825 * 223.75252 * 26 25 23 28 28 C 1.53002 * 117.49662 * 155.09466 * 26 25 23 29 29 H 1.08998 * 109.47459 * 300.00004 * 1 2 3 30 30 H 1.08994 * 109.46994 * 60.00079 * 1 2 3 31 31 H 1.08998 * 109.46898 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47032 * 60.00092 * 7 5 4 33 33 H 1.08995 * 109.47135 * 299.99527 * 7 5 4 34 34 H 1.07999 * 119.96521 * 0.02562 * 9 8 7 35 35 H 1.07997 * 120.03156 * 179.97438 * 10 9 8 36 36 H 0.96997 * 119.99350 * 179.97438 * 16 15 13 37 37 H 1.07996 * 120.04097 * 179.72435 * 21 11 10 38 38 H 1.07996 * 119.96589 * 180.23432 * 22 21 11 39 39 H 0.96999 * 120.00516 * 0.02562 * 25 23 2 40 40 H 1.08994 * 115.55430 * 9.42123 * 26 25 23 41 41 H 1.09006 * 117.49833 * 359.97438 * 27 26 25 42 42 H 1.08993 * 117.50100 * 145.02542 * 27 26 25 43 43 H 1.09005 * 117.49309 * 214.97759 * 28 26 25 44 44 H 1.09000 * 117.50217 * 359.96957 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0141 -0.6844 1.1856 5 6 2.2171 0.0640 2.2811 6 8 1.9981 1.2519 2.2504 7 6 2.7183 -0.5772 3.5495 8 6 2.8614 0.4731 4.6208 9 6 1.7967 0.7551 5.4572 10 6 1.9245 1.7174 6.4395 11 6 3.1238 2.4018 6.5872 12 8 3.2527 3.3479 7.5521 13 6 2.2203 3.4951 8.4068 14 1 1.3104 2.9331 8.2564 15 6 2.3268 4.3681 9.4788 16 7 1.3196 4.5114 10.3129 17 14 3.9008 5.3397 9.7393 18 1 3.8098 6.6330 9.0153 19 1 4.0897 5.5965 11.1897 20 1 5.0543 4.5618 9.2201 21 6 4.1894 2.1201 5.7422 22 6 4.0569 1.1533 4.7650 23 6 2.0324 -0.7103 -1.2304 24 8 2.6530 -1.7467 -1.1215 25 7 1.7919 -0.1942 -2.4519 26 6 2.2799 -0.8851 -3.6481 27 6 2.9267 -0.0327 -4.7418 28 6 1.5363 -0.6341 -4.9616 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.6872 -1.0408 3.3640 33 1 2.0088 -1.3369 3.8775 34 1 0.8644 0.2222 5.3421 35 1 1.0926 1.9374 7.0921 36 1 1.3943 5.1218 11.0630 37 1 5.1219 2.6538 5.8517 38 1 4.8864 0.9311 4.1101 39 1 1.2957 0.6347 -2.5392 40 1 2.6853 -1.8831 -3.4822 41 1 2.9889 1.0422 -4.5714 42 1 3.7574 -0.4701 -5.2955 43 1 1.4530 -1.4670 -5.6598 44 1 0.6838 0.0447 -4.9356 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732365900.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:36 Heat of formation + Delta-G solvation = -94.643159 kcal Electronic energy + Delta-G solvation = -27069.201793 eV Core-core repulsion = 22953.662751 eV Total energy + Delta-G solvation = -4115.539042 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.97465 -39.94233 -39.13067 -37.64464 -36.98786 -36.18939 -33.76985 -32.58974 -32.03192 -31.27907 -30.27675 -27.23624 -25.50197 -24.92674 -22.93830 -22.74632 -22.13267 -21.54494 -20.82527 -20.16168 -18.06086 -17.94443 -17.81508 -17.27024 -17.01498 -16.33639 -15.88467 -15.36654 -15.04029 -14.89018 -14.66310 -14.37967 -14.11424 -13.80686 -13.72842 -13.49831 -13.23382 -13.19958 -12.78415 -12.70439 -12.53651 -12.22257 -12.14989 -12.01034 -11.89053 -11.71344 -11.35676 -11.08234 -11.04984 -10.97655 -10.81793 -10.69616 -10.43202 -10.16741 -10.09994 -9.40921 -9.29720 -8.88609 -8.27583 -7.36702 -6.43554 -4.10043 1.84379 2.06673 2.12601 2.21514 2.31158 3.00347 3.22267 3.24858 3.36569 3.39423 4.08493 4.21398 4.22392 4.38056 4.40017 4.44394 4.47588 4.59748 4.78044 4.83607 5.02630 5.08326 5.09139 5.18437 5.22292 5.26456 5.32278 5.38929 5.52289 5.56850 5.64090 5.65702 5.72314 5.94245 6.10310 6.26603 6.30921 6.53808 6.75956 6.89876 6.98903 7.17254 7.26474 7.57880 7.68523 7.77605 7.79695 8.01565 8.91459 9.53413 10.63865 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.027566 B = 0.001859 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.511891 B =15060.370944 C =15167.242668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.069 3.931 3 H 0.111 0.889 4 O -0.334 6.334 5 C 0.457 3.543 6 O -0.490 6.490 7 C -0.050 4.050 8 C -0.175 4.175 9 C -0.054 4.054 10 C -0.220 4.220 11 C 0.165 3.835 12 O -0.215 6.215 13 C -0.390 4.390 14 H 0.107 0.893 15 C 0.063 3.937 16 N -0.878 5.878 17 Si 0.906 3.094 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.259 1.259 21 C -0.192 4.192 22 C -0.058 4.058 23 C 0.524 3.476 24 O -0.513 6.513 25 N -0.700 5.700 26 C 0.080 3.920 27 C -0.193 4.193 28 C -0.188 4.188 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.134 0.866 36 H 0.280 0.720 37 H 0.118 0.882 38 H 0.112 0.888 39 H 0.404 0.596 40 H 0.140 0.860 41 H 0.098 0.902 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.400 -10.440 -26.932 28.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.010 3.990 3 H 0.129 0.871 4 O -0.251 6.251 5 C 0.299 3.701 6 O -0.375 6.375 7 C -0.088 4.088 8 C -0.176 4.176 9 C -0.072 4.072 10 C -0.239 4.239 11 C 0.113 3.887 12 O -0.120 6.120 13 C -0.465 4.465 14 H 0.124 0.876 15 C -0.140 4.140 16 N -0.516 5.516 17 Si 0.731 3.269 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.183 1.183 21 C -0.211 4.211 22 C -0.076 4.076 23 C 0.309 3.691 24 O -0.386 6.386 25 N -0.353 5.353 26 C -0.026 4.026 27 C -0.231 4.231 28 C -0.226 4.226 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.152 0.848 36 H 0.090 0.910 37 H 0.136 0.864 38 H 0.130 0.870 39 H 0.238 0.762 40 H 0.157 0.843 41 H 0.117 0.883 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.072 -10.559 -26.567 28.588 hybrid contribution 0.059 1.124 0.038 1.126 sum 0.131 -9.435 -26.528 28.157 Atomic orbital electron populations 1.22153 0.91729 1.04085 1.04260 1.22323 0.96044 0.97696 0.82899 0.87116 1.86670 1.77378 1.41734 1.19309 1.24360 0.74402 0.86380 0.84938 1.90697 1.46778 1.16482 1.83585 1.20122 1.03615 0.97811 0.87226 1.18704 0.95898 1.02926 1.00077 1.20592 0.96654 0.96067 0.93926 1.21228 0.99007 1.01003 1.02711 1.19149 0.93098 0.87607 0.88869 1.83570 1.43013 1.47920 1.37509 1.20785 0.93656 1.26837 1.05235 0.87557 1.24478 0.98560 0.96833 0.94126 1.69647 1.30867 1.36388 1.14656 0.86172 0.83068 0.80340 0.77284 1.19872 1.20781 1.18322 1.20157 0.98311 1.03023 0.99586 1.20440 0.96225 0.94635 0.96342 1.20224 0.79525 0.85392 0.83961 1.90744 1.38813 1.22830 1.86250 1.45244 1.57907 1.27558 1.04569 1.21623 1.02372 0.98276 0.80338 1.23468 0.96652 1.00358 1.02667 1.23409 0.95891 1.04127 0.99186 0.90150 0.90354 0.90746 0.87420 0.87419 0.87290 0.84812 0.91019 0.86393 0.86965 0.76156 0.84267 0.88320 0.87789 0.87695 0.88319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 9.50 37.16 0.35 -0.94 16 2 C 0.07 0.71 2.97 -27.88 -0.08 0.63 16 3 H 0.11 1.11 7.16 -51.93 -0.37 0.74 16 4 O -0.33 -4.32 9.42 -45.87 -0.43 -4.75 16 5 C 0.46 6.39 7.92 36.01 0.29 6.67 16 6 O -0.49 -8.23 15.25 -18.75 -0.29 -8.52 16 7 C -0.05 -0.63 5.94 -29.03 -0.17 -0.81 16 8 C -0.18 -2.89 4.38 -104.57 -0.46 -3.34 16 9 C -0.05 -0.98 9.69 -39.61 -0.38 -1.36 16 10 C -0.22 -4.77 9.17 -39.40 -0.36 -5.13 16 11 C 0.17 3.85 6.65 -39.11 -0.26 3.59 16 12 O -0.22 -5.71 8.59 0.05 0.00 -5.71 16 13 C -0.39 -10.98 9.95 30.89 0.31 -10.67 16 14 H 0.11 3.05 5.44 -52.48 -0.29 2.77 16 15 C 0.06 1.78 5.49 -17.51 -0.10 1.68 16 16 N -0.88 -25.28 13.96 55.48 0.77 -24.50 16 17 Si 0.91 21.68 28.62 -169.99 -4.86 16.81 16 18 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.26 -6.22 7.11 56.52 0.40 -5.82 16 21 C -0.19 -3.84 9.99 -39.39 -0.39 -4.23 16 22 C -0.06 -1.00 9.69 -39.61 -0.38 -1.38 16 23 C 0.52 5.48 7.18 -10.99 -0.08 5.40 16 24 O -0.51 -7.40 16.08 -14.06 -0.23 -7.62 16 25 N -0.70 -4.84 5.53 -53.80 -0.30 -5.14 16 26 C 0.08 0.52 6.43 -67.92 -0.44 0.08 16 27 C -0.19 -0.93 10.46 -26.69 -0.28 -1.20 16 28 C -0.19 -0.79 10.46 -26.69 -0.28 -1.06 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 0.39 7.92 -51.93 -0.41 -0.03 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.11 1.14 8.08 -51.93 -0.42 0.72 16 33 H 0.11 1.12 8.08 -51.93 -0.42 0.70 16 34 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 35 H 0.13 3.03 5.64 -52.49 -0.30 2.73 16 36 H 0.28 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.12 2.20 8.06 -52.49 -0.42 1.77 16 38 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.40 1.68 8.61 -40.82 -0.35 1.33 16 40 H 0.14 1.10 7.40 -51.93 -0.38 0.72 16 41 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 384.31 15.07 5.79 5.79 Total: -1.00 -34.25 384.31 -8.14 -42.39 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -5.88 Total: 3.35 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: -2.72 Total: -12.09 kcal Atomic # 7 Polarization: -30.12 SS G_CDS: 0.48 Total: -29.65 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -0.94 Total: -26.60 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.86 Total: 16.81 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.25 -8.14 -42.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732365900.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.258 kcal (2) G-P(sol) polarization free energy of solvation -34.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds