Wall clock time and date at job start Tue Mar 31 2020 18:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08995 * 109.47531 * 2 1 4 4 O 1.45212 * 109.46776 * 240.00340 * 2 1 3 5 5 C 1.34228 * 116.99931 * 89.99909 * 4 2 1 6 6 O 1.20827 * 120.00056 * 0.02562 * 5 4 2 7 7 C 1.50697 * 119.99986 * 179.97438 * 5 4 2 8 8 C 1.50702 * 109.47169 * 179.97438 * 7 5 4 9 9 C 1.38298 * 119.93242 * 269.73430 * 8 7 5 10 10 C 1.38103 * 120.06745 * 179.72868 * 9 8 7 11 11 C 1.38881 * 119.92915 * 0.56008 * 10 9 8 12 12 O 1.35756 * 120.06849 * 179.68449 * 11 10 9 13 13 C 1.34832 * 116.99603 * 174.49111 * 12 11 10 14 14 H 1.07994 * 120.00257 * 5.05499 * 13 12 11 15 15 C 1.38656 * 119.99344 * 185.06078 * 13 12 11 16 16 N 1.31550 * 120.00229 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99682 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47200 * 59.99878 * 17 15 13 19 19 H 1.48501 * 109.47070 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47155 * 299.99846 * 17 15 13 21 21 C 1.38877 * 119.86118 * 359.71335 * 11 10 9 22 22 C 1.38100 * 119.93349 * 359.97438 * 21 11 10 23 23 C 1.50692 * 109.47588 * 120.00451 * 2 1 3 24 24 O 1.21285 * 120.00196 * 114.99629 * 23 2 1 25 25 N 1.34781 * 119.99960 * 294.99812 * 23 2 1 26 26 C 1.46500 * 119.99835 * 180.26920 * 25 23 2 27 27 C 1.53002 * 117.49963 * 223.46859 * 26 25 23 28 28 C 1.53004 * 117.49521 * 154.80940 * 26 25 23 29 29 H 1.09005 * 109.46786 * 299.99394 * 1 2 3 30 30 H 1.09002 * 109.47675 * 59.99729 * 1 2 3 31 31 H 1.08995 * 109.47531 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47448 * 300.00217 * 7 5 4 33 33 H 1.09005 * 109.46927 * 60.00596 * 7 5 4 34 34 H 1.07996 * 119.97002 * 359.97426 * 9 8 7 35 35 H 1.08000 * 120.03493 * 180.27563 * 10 9 8 36 36 H 0.97001 * 120.00037 * 180.02562 * 16 15 13 37 37 H 1.08004 * 120.03075 * 179.97438 * 21 11 10 38 38 H 1.08002 * 119.96438 * 180.02562 * 22 21 11 39 39 H 0.96992 * 119.99586 * 359.97438 * 25 23 2 40 40 H 1.09004 * 115.55045 * 9.15072 * 26 25 23 41 41 H 1.08999 * 117.49445 * 0.02562 * 27 26 25 42 42 H 1.08998 * 117.49395 * 145.02507 * 27 26 25 43 43 H 1.08997 * 117.50191 * 214.97676 * 28 26 25 44 44 H 1.09000 * 117.50047 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0139 -0.6845 -1.1857 5 6 2.2169 0.0641 -2.2812 6 8 1.9980 1.2519 -2.2504 7 6 2.7190 -0.5769 -3.5493 8 6 2.8607 0.4732 -4.6209 9 6 1.7975 0.7495 -5.4612 10 6 1.9225 1.7152 -6.4405 11 6 3.1211 2.4008 -6.5887 12 8 3.2491 3.3461 -7.5546 13 6 4.3972 4.0529 -7.5710 14 1 5.1963 3.8008 -6.8897 15 6 4.5517 5.1035 -8.4626 16 7 3.5784 5.4103 -9.2928 17 14 6.1420 6.0832 -8.4849 18 1 7.2769 5.1778 -8.7971 19 1 6.0557 7.1434 -9.5211 20 1 6.3578 6.7070 -7.1546 21 6 4.1887 2.1170 -5.7470 22 6 4.0554 1.1548 -4.7654 23 6 2.0323 -0.7104 1.2303 24 8 2.6530 -1.7468 1.1212 25 7 1.7920 -0.1943 2.4519 26 6 2.2855 -0.8819 3.6477 27 6 1.3335 -0.9972 4.8399 28 6 2.5240 -0.0368 4.9007 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 3.6881 -1.0399 -3.3634 33 1 2.0101 -1.3370 -3.8776 34 1 0.8674 0.2124 -5.3488 35 1 1.0904 1.9337 -7.0935 36 1 3.6867 6.1450 -9.9168 37 1 5.1222 2.6483 -5.8601 38 1 4.8852 0.9340 -4.1103 39 1 1.2960 0.6346 2.5391 40 1 2.9660 -1.7136 3.4646 41 1 0.3399 -0.5617 4.7343 42 1 1.3878 -1.9046 5.4413 43 1 3.3609 -0.3128 5.5422 44 1 2.3141 1.0308 4.8352 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732365901.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:38 Heat of formation + Delta-G solvation = -118.739558 kcal Electronic energy + Delta-G solvation = -27064.240486 eV Core-core repulsion = 22947.656546 eV Total energy + Delta-G solvation = -4116.583940 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.95025 -40.93297 -40.53855 -38.57874 -38.08394 -37.32297 -34.53039 -34.39397 -33.15164 -32.17402 -31.80304 -28.49778 -27.16610 -26.06032 -23.67866 -23.63188 -23.27875 -22.53341 -21.75545 -21.38360 -19.86209 -19.01875 -18.85426 -18.65977 -17.69196 -17.32825 -16.79458 -16.43822 -16.35939 -16.08678 -15.94068 -15.52551 -15.44166 -15.26002 -15.05636 -14.48937 -14.37955 -14.26692 -13.99903 -13.71538 -13.61288 -13.41999 -13.00370 -12.92809 -12.72506 -12.55895 -12.50632 -12.38230 -12.36446 -12.29805 -12.14849 -11.95511 -11.58804 -11.48746 -11.19687 -10.94894 -10.79086 -9.86034 -9.78863 -8.96229 -8.47776 -6.16091 0.54796 0.59705 1.15320 1.30659 1.31304 1.34324 1.45872 1.50650 2.17055 2.19265 2.83096 2.95267 3.15662 3.39446 3.49894 3.68111 3.76865 3.78180 3.84335 3.99639 4.01720 4.03852 4.06057 4.17271 4.41344 4.55656 4.60010 4.60600 4.67001 4.74317 4.77357 4.78144 5.01945 5.03029 5.05112 5.13342 5.20716 5.25485 5.31329 5.41327 5.53644 5.69848 5.72581 6.01788 6.19357 6.29382 6.73376 6.96567 7.00748 7.76610 8.75041 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.020507 B = 0.001936 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.067616 B =14460.684122 C =15132.328422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.064 3.936 3 H 0.113 0.887 4 O -0.340 6.340 5 C 0.464 3.536 6 O -0.526 6.526 7 C -0.049 4.049 8 C -0.158 4.158 9 C -0.051 4.051 10 C -0.205 4.205 11 C 0.117 3.883 12 O -0.231 6.231 13 C -0.415 4.415 14 H 0.101 0.899 15 C -0.023 4.023 16 N -0.919 5.919 17 Si 1.019 2.981 18 H -0.256 1.256 19 H -0.270 1.270 20 H -0.259 1.259 21 C -0.245 4.245 22 C -0.056 4.056 23 C 0.524 3.476 24 O -0.561 6.561 25 N -0.682 5.682 26 C 0.049 3.951 27 C -0.178 4.178 28 C -0.175 4.175 29 H 0.109 0.891 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.134 0.866 33 H 0.143 0.857 34 H 0.152 0.848 35 H 0.116 0.884 36 H 0.273 0.727 37 H 0.119 0.881 38 H 0.138 0.862 39 H 0.418 0.582 40 H 0.118 0.882 41 H 0.109 0.891 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.066 -13.015 27.749 31.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.005 3.995 3 H 0.130 0.870 4 O -0.257 6.257 5 C 0.308 3.692 6 O -0.414 6.414 7 C -0.086 4.086 8 C -0.158 4.158 9 C -0.068 4.068 10 C -0.224 4.224 11 C 0.067 3.933 12 O -0.137 6.137 13 C -0.491 4.491 14 H 0.118 0.882 15 C -0.220 4.220 16 N -0.557 5.557 17 Si 0.838 3.162 18 H -0.180 1.180 19 H -0.195 1.195 20 H -0.184 1.184 21 C -0.264 4.264 22 C -0.074 4.074 23 C 0.310 3.690 24 O -0.438 6.438 25 N -0.334 5.334 26 C -0.056 4.056 27 C -0.217 4.217 28 C -0.213 4.213 29 H 0.127 0.873 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.152 0.848 33 H 0.161 0.839 34 H 0.169 0.831 35 H 0.134 0.866 36 H 0.082 0.918 37 H 0.137 0.863 38 H 0.156 0.844 39 H 0.256 0.744 40 H 0.136 0.864 41 H 0.128 0.872 42 H 0.128 0.872 43 H 0.130 0.870 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.902 -13.182 27.353 30.757 hybrid contribution 0.386 1.316 -0.420 1.434 sum -4.516 -11.866 26.933 29.776 Atomic orbital electron populations 1.22161 0.89648 1.04449 1.05351 1.22591 0.97664 0.97355 0.81857 0.86979 1.86641 1.77277 1.41936 1.19805 1.24428 0.73528 0.85780 0.85443 1.90705 1.48528 1.17907 1.84229 1.20230 1.06171 0.96881 0.85318 1.19134 0.94665 1.02218 0.99833 1.20898 0.98636 0.94786 0.92521 1.20450 0.95822 1.01989 1.04137 1.19971 0.95062 0.89741 0.88573 1.83942 1.39944 1.44197 1.45630 1.21782 0.92217 1.12900 1.22245 0.88186 1.26597 1.03333 0.97386 0.94707 1.70174 1.34557 1.29646 1.21334 0.84654 0.75227 0.77404 0.78962 1.18041 1.19486 1.18360 1.21223 0.99535 1.04499 1.01120 1.20946 0.97811 0.93233 0.95419 1.20294 0.79032 0.84802 0.84854 1.90722 1.41262 1.24887 1.86939 1.45108 1.56862 1.27678 1.03768 1.21684 1.03089 1.00315 0.80536 1.23529 0.95991 1.02560 0.99585 1.23504 1.01009 0.98551 0.98217 0.87252 0.91064 0.90672 0.84795 0.83941 0.83062 0.86625 0.91799 0.86315 0.84382 0.74380 0.86378 0.87234 0.87188 0.86986 0.87154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.50 71.98 0.68 -1.44 16 2 C 0.06 1.22 2.97 29.84 0.09 1.31 16 3 H 0.11 2.13 7.16 -2.39 -0.02 2.12 16 4 O -0.34 -8.23 9.42 -45.05 -0.42 -8.65 16 5 C 0.46 12.02 7.92 71.24 0.56 12.59 16 6 O -0.53 -17.12 15.25 21.96 0.33 -16.78 16 7 C -0.05 -1.08 5.94 29.10 0.17 -0.90 16 8 C -0.16 -4.93 4.38 -19.83 -0.09 -5.02 16 9 C -0.05 -1.70 9.69 22.25 0.22 -1.49 16 10 C -0.20 -8.89 9.99 22.39 0.22 -8.66 16 11 C 0.12 5.98 6.65 22.58 0.15 6.13 16 12 O -0.23 -14.17 9.76 -22.83 -0.22 -14.40 16 13 C -0.42 -24.66 9.49 67.92 0.64 -24.02 16 14 H 0.10 5.46 5.20 -2.91 -0.02 5.45 16 15 C -0.02 -1.30 5.49 84.83 0.47 -0.84 16 16 N -0.92 -57.03 13.67 21.61 0.30 -56.74 16 17 Si 1.02 43.45 29.55 68.60 2.03 45.48 16 18 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 19 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 20 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 21 C -0.24 -10.99 9.17 22.39 0.21 -10.79 16 22 C -0.06 -2.00 9.69 22.25 0.22 -1.78 16 23 C 0.52 10.55 7.18 87.65 0.63 11.18 16 24 O -0.56 -16.22 16.08 15.70 0.25 -15.97 16 25 N -0.68 -8.48 5.53 -442.52 -2.45 -10.92 16 26 C 0.05 0.59 6.43 44.99 0.29 0.88 16 27 C -0.18 -1.21 10.46 30.62 0.32 -0.89 16 28 C -0.17 -1.17 10.46 30.62 0.32 -0.85 16 29 H 0.11 0.73 7.93 -2.38 -0.02 0.72 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.13 2.34 8.08 -2.39 -0.02 2.32 16 33 H 0.14 2.22 8.08 -2.38 -0.02 2.20 16 34 H 0.15 3.85 8.06 -2.91 -0.02 3.83 16 35 H 0.12 4.93 8.06 -2.91 -0.02 4.91 16 36 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 37 H 0.12 5.42 5.64 -2.91 -0.02 5.40 16 38 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 39 H 0.42 2.53 8.61 -92.71 -0.80 1.74 16 40 H 0.12 1.94 7.40 -2.38 -0.02 1.93 16 41 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.11 0.62 8.14 -2.39 -0.02 0.61 16 43 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -83.73 385.43 5.16 -78.57 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: 0.24 Total: 24.00 kcal Atomic # 6 Polarization: -29.70 SS G_CDS: 5.10 Total: -24.59 kcal Atomic # 7 Polarization: -65.51 SS G_CDS: -2.15 Total: -67.66 kcal Atomic # 8 Polarization: -55.73 SS G_CDS: -0.06 Total: -55.79 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -83.73 5.16 -78.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732365901.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.171 kcal (2) G-P(sol) polarization free energy of solvation -83.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds