Wall clock time and date at job start Tue Mar 31 2020 18:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50695 * 120.00025 * 2 1 4 4 N 1.46498 * 109.47403 * 124.99697 * 3 2 1 5 5 C 1.34775 * 119.99932 * 179.97438 * 4 3 2 6 6 O 1.21280 * 120.00569 * 0.02562 * 5 4 3 7 7 C 1.50708 * 119.99778 * 180.02562 * 5 4 3 8 8 H 1.08996 * 109.47100 * 305.00195 * 7 5 4 9 9 C 1.52999 * 109.46860 * 65.00110 * 7 5 4 10 10 O 1.45196 * 109.46852 * 185.00027 * 7 5 4 11 11 C 1.34231 * 116.99648 * 150.00290 * 10 7 5 12 12 O 1.20829 * 120.00151 * 359.97438 * 11 10 7 13 13 C 1.50701 * 119.99993 * 179.97438 * 11 10 7 14 14 C 1.50695 * 109.47259 * 179.97438 * 13 11 10 15 15 C 1.38302 * 119.93063 * 269.72539 * 14 13 11 16 16 C 1.38101 * 120.07064 * 179.72418 * 15 14 13 17 17 C 1.38882 * 119.92845 * 0.57041 * 16 15 14 18 18 O 1.35747 * 120.07054 * 179.68267 * 17 16 15 19 19 C 1.34827 * 117.00058 * 174.48739 * 18 17 16 20 20 H 1.07999 * 120.00047 * 5.06101 * 19 18 17 21 21 C 1.38658 * 119.99749 * 185.05598 * 19 18 17 22 22 N 1.31549 * 120.00299 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99716 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47154 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47266 * 119.99931 * 23 21 19 26 26 H 1.48503 * 109.46741 * 239.99992 * 23 21 19 27 27 C 1.38876 * 119.86128 * 359.70389 * 17 16 15 28 28 C 1.38101 * 119.93201 * 0.02562 * 27 17 16 29 29 H 1.07993 * 119.99991 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.00061 * 180.02562 * 1 2 3 31 31 H 1.08002 * 119.99912 * 179.97438 * 2 1 3 32 32 H 1.09003 * 109.47353 * 4.99935 * 3 2 1 33 33 H 1.08997 * 109.47110 * 245.00102 * 3 2 1 34 34 H 0.97005 * 119.99874 * 0.02562 * 4 3 2 35 35 H 1.09001 * 109.47199 * 300.00033 * 9 7 5 36 36 H 1.09004 * 109.47525 * 60.00114 * 9 7 5 37 37 H 1.09006 * 109.47233 * 179.97438 * 9 7 5 38 38 H 1.09002 * 109.47140 * 299.99861 * 13 11 10 39 39 H 1.09004 * 109.46770 * 59.99728 * 13 11 10 40 40 H 1.08001 * 119.96793 * 359.97438 * 15 14 13 41 41 H 1.08002 * 120.03716 * 180.27841 * 16 15 14 42 42 H 0.97002 * 120.00136 * 180.02562 * 22 21 19 43 43 H 1.07997 * 120.03483 * 179.97438 * 27 17 16 44 44 H 1.08000 * 119.96760 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 3.7789 2.4087 1.3328 6 8 3.7152 3.3556 0.5777 7 6 4.7363 2.4360 2.4964 8 1 4.1898 2.2500 3.4210 9 6 5.8008 1.3536 2.3066 10 8 5.3764 3.7375 2.5660 11 6 5.7431 4.1719 3.7819 12 8 5.5357 3.4877 4.7559 13 6 6.4135 5.5132 3.9322 14 6 6.7198 5.7616 5.3867 15 6 5.7911 6.4005 6.1881 16 6 6.0664 6.6244 7.5227 17 6 7.2821 6.2180 8.0572 18 8 7.5583 6.4424 9.3671 19 6 8.7053 5.9226 9.8487 20 1 9.3958 5.4277 9.1818 21 6 8.9985 6.0234 11.2002 22 7 8.1573 6.6258 12.0126 23 14 10.5880 5.3037 11.8673 24 1 11.3549 4.6835 10.7571 25 1 11.3984 6.3829 12.4869 26 1 10.2741 4.2721 12.8882 27 6 8.2148 5.5817 7.2485 28 6 7.9313 5.3557 5.9160 29 1 -0.5400 0.9352 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8501 -0.9353 0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6213 1.4026 -0.9314 34 1 3.0451 0.5744 1.7352 35 1 5.3202 0.3766 2.2543 36 1 6.3473 1.5396 1.3820 37 1 6.4935 1.3736 3.1480 38 1 7.3404 5.5224 3.3587 39 1 5.7497 6.2947 3.5624 40 1 4.8480 6.7210 5.7707 41 1 5.3390 7.1194 8.1491 42 1 8.3626 6.6967 12.9580 43 1 9.1612 5.2648 7.6611 44 1 8.6564 4.8613 5.2865 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732366612.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:41 Heat of formation + Delta-G solvation = -103.548840 kcal Electronic energy + Delta-G solvation = -26931.177789 eV Core-core repulsion = 22815.252567 eV Total energy + Delta-G solvation = -4115.925221 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.89568 -39.77828 -38.94672 -37.00808 -36.32678 -35.98788 -33.60191 -32.56683 -32.05504 -31.22486 -30.17643 -26.99790 -26.95260 -25.29185 -24.45451 -22.00195 -21.78868 -21.05771 -20.32676 -20.12302 -18.01540 -17.90142 -17.83962 -16.96432 -16.54864 -16.34100 -16.04531 -15.63393 -14.87106 -14.65744 -14.55135 -14.37376 -14.34546 -13.71673 -13.62170 -13.55919 -13.50325 -13.18303 -12.78799 -12.71619 -12.68373 -12.50680 -12.00468 -11.84007 -11.71769 -11.54513 -11.29708 -10.99056 -10.89500 -10.80379 -10.62217 -10.43398 -10.42780 -10.34694 -9.93074 -9.51490 -9.33903 -8.84359 -8.17729 -7.20932 -6.46010 -4.04502 1.46652 2.01894 2.18618 2.23221 2.31781 2.48802 3.10899 3.13481 3.19142 3.20192 3.96105 4.16290 4.27105 4.47030 4.52143 4.54472 4.64931 4.85307 5.00813 5.06645 5.10460 5.21168 5.23434 5.27960 5.30184 5.31301 5.39360 5.65311 5.68963 5.71168 5.82718 5.83186 5.95599 6.10988 6.19936 6.34261 6.40078 6.68647 6.89304 6.97156 7.03994 7.21737 7.33601 7.43093 7.74598 7.80541 7.86336 7.99209 8.99666 9.69451 10.71966 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.023009 B = 0.001840 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.647046 B =15213.339651 C =15394.995840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.180 4.180 3 C 0.148 3.852 4 N -0.726 5.726 5 C 0.519 3.481 6 O -0.516 6.516 7 C 0.068 3.932 8 H 0.111 0.889 9 C -0.164 4.164 10 O -0.335 6.335 11 C 0.456 3.544 12 O -0.490 6.490 13 C -0.048 4.048 14 C -0.184 4.184 15 C -0.056 4.056 16 C -0.192 4.192 17 C 0.159 3.841 18 O -0.176 6.176 19 C -0.391 4.391 20 H 0.093 0.907 21 C 0.039 3.961 22 N -0.861 5.861 23 Si 0.942 3.058 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.233 4.233 28 C -0.053 4.053 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.117 0.883 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.404 0.596 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.110 0.890 41 H 0.118 0.882 42 H 0.270 0.730 43 H 0.128 0.872 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.399 -12.746 -22.744 27.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.198 4.198 3 C 0.025 3.975 4 N -0.380 5.380 5 C 0.304 3.696 6 O -0.390 6.390 7 C 0.009 3.991 8 H 0.128 0.872 9 C -0.222 4.222 10 O -0.252 6.252 11 C 0.298 3.702 12 O -0.375 6.375 13 C -0.086 4.086 14 C -0.185 4.185 15 C -0.075 4.075 16 C -0.211 4.211 17 C 0.105 3.895 18 O -0.079 6.079 19 C -0.468 4.468 20 H 0.111 0.889 21 C -0.165 4.165 22 N -0.496 5.496 23 Si 0.766 3.234 24 H -0.191 1.191 25 H -0.201 1.201 26 H -0.201 1.201 27 C -0.253 4.253 28 C -0.071 4.071 29 H 0.119 0.881 30 H 0.123 0.877 31 H 0.135 0.865 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.238 0.762 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.128 0.872 41 H 0.136 0.864 42 H 0.080 0.920 43 H 0.146 0.854 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -9.641 -12.079 -22.570 27.354 hybrid contribution 0.728 -1.026 0.695 1.438 sum -8.913 -13.106 -21.875 27.013 Atomic orbital electron populations 1.24024 0.95785 1.02606 0.97564 1.22985 0.96264 0.97988 1.02564 1.20435 0.91694 0.95825 0.89544 1.45862 1.41030 1.19869 1.31282 1.20250 0.80695 0.82633 0.86066 1.90749 1.67168 1.34789 1.46248 1.22334 0.94555 0.83590 0.98575 0.87169 1.22147 0.98931 0.96749 1.04342 1.86674 1.70422 1.34267 1.33820 1.24409 0.76172 0.89301 0.80306 1.90696 1.50709 1.56798 1.39287 1.20105 1.01423 0.90387 0.96671 1.18634 0.97091 1.09577 0.93149 1.20439 0.97241 0.97021 0.92756 1.20164 0.96592 1.09058 0.95272 1.19402 0.92679 0.91866 0.85530 1.83976 1.40194 1.65037 1.18716 1.21395 0.95540 1.36961 0.92872 0.88941 1.25303 0.99439 0.96938 0.94860 1.70046 1.35361 1.39636 1.04570 0.85638 0.79909 0.78642 0.79182 1.19078 1.20120 1.20137 1.21109 1.01683 1.08352 0.94114 1.20532 0.95301 0.96680 0.94569 0.88055 0.87726 0.86537 0.90822 0.90379 0.76187 0.90359 0.90847 0.90241 0.87610 0.87544 0.87154 0.86395 0.92041 0.85444 0.87603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.65 14.32 29.01 0.42 -0.24 16 2 C -0.18 -0.79 9.63 -36.03 -0.35 -1.13 16 3 C 0.15 0.96 6.11 -5.20 -0.03 0.92 16 4 N -0.73 -5.14 5.51 -61.47 -0.34 -5.48 16 5 C 0.52 5.61 7.18 -10.98 -0.08 5.53 16 6 O -0.52 -7.65 16.51 -14.05 -0.23 -7.89 16 7 C 0.07 0.73 2.97 -27.88 -0.08 0.65 16 8 H 0.11 1.17 7.16 -51.93 -0.37 0.79 16 9 C -0.16 -1.34 9.50 37.16 0.35 -0.98 16 10 O -0.33 -4.51 9.42 -45.89 -0.43 -4.94 16 11 C 0.46 6.66 7.92 36.01 0.29 6.94 16 12 O -0.49 -8.57 15.25 -18.75 -0.29 -8.86 16 13 C -0.05 -0.64 5.94 -29.04 -0.17 -0.81 16 14 C -0.18 -3.17 4.38 -104.58 -0.46 -3.63 16 15 C -0.06 -1.03 9.69 -39.61 -0.38 -1.41 16 16 C -0.19 -4.13 9.99 -39.39 -0.39 -4.53 16 17 C 0.16 3.91 6.65 -39.11 -0.26 3.65 16 18 O -0.18 -5.07 9.76 0.07 0.00 -5.07 16 19 C -0.39 -11.01 9.49 30.89 0.29 -10.71 16 20 H 0.09 2.41 5.20 -52.49 -0.27 2.13 16 21 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 22 N -0.86 -25.34 13.67 55.48 0.76 -24.58 16 23 Si 0.94 20.58 29.55 -169.99 -5.02 15.55 16 24 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 25 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 26 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 27 C -0.23 -5.14 9.17 -39.40 -0.36 -5.50 16 28 C -0.05 -0.98 9.69 -39.61 -0.38 -1.36 16 29 H 0.10 0.40 7.84 -52.49 -0.41 -0.01 16 30 H 0.10 0.30 8.06 -52.49 -0.42 -0.12 16 31 H 0.12 0.37 8.06 -52.49 -0.42 -0.05 16 32 H 0.07 0.54 7.79 -51.93 -0.40 0.14 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.40 1.78 8.25 -40.82 -0.34 1.45 16 35 H 0.08 0.41 7.92 -51.93 -0.41 -0.01 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.11 1.16 8.08 -51.93 -0.42 0.74 16 39 H 0.11 1.20 8.08 -51.93 -0.42 0.78 16 40 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 41 H 0.12 2.45 8.06 -52.49 -0.42 2.02 16 42 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 43 H 0.13 2.80 5.64 -52.49 -0.30 2.50 16 44 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 LS Contribution 388.12 15.07 5.85 5.85 Total: -1.00 -35.57 388.12 -7.27 -42.84 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -5.86 Total: 4.21 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -1.70 Total: -11.63 kcal Atomic # 7 Polarization: -30.48 SS G_CDS: 0.42 Total: -30.06 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -0.95 Total: -26.76 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.57 -7.27 -42.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732366612.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.707 kcal (2) G-P(sol) polarization free energy of solvation -35.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds