Wall clock time and date at job start Tue Mar 31 2020 18:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50695 * 120.00025 * 2 1 4 4 N 1.46498 * 109.47403 * 124.99697 * 3 2 1 5 5 C 1.34775 * 119.99932 * 179.97438 * 4 3 2 6 6 O 1.21280 * 120.00569 * 0.02562 * 5 4 3 7 7 C 1.50708 * 119.99778 * 180.02562 * 5 4 3 8 8 H 1.08996 * 109.47100 * 305.00195 * 7 5 4 9 9 C 1.52999 * 109.46860 * 65.00110 * 7 5 4 10 10 O 1.45196 * 109.46852 * 185.00027 * 7 5 4 11 11 C 1.34231 * 116.99648 * 150.00290 * 10 7 5 12 12 O 1.20829 * 120.00151 * 359.97438 * 11 10 7 13 13 C 1.50701 * 119.99993 * 179.97438 * 11 10 7 14 14 C 1.50695 * 109.47259 * 179.97438 * 13 11 10 15 15 C 1.38302 * 119.93063 * 269.72539 * 14 13 11 16 16 C 1.38101 * 120.07064 * 179.72418 * 15 14 13 17 17 C 1.38882 * 119.92845 * 0.57041 * 16 15 14 18 18 O 1.35747 * 120.07054 * 179.68267 * 17 16 15 19 19 C 1.34827 * 117.00058 * 174.48739 * 18 17 16 20 20 H 1.07999 * 120.00047 * 5.06101 * 19 18 17 21 21 C 1.38658 * 119.99749 * 185.05598 * 19 18 17 22 22 N 1.31549 * 120.00299 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99716 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47154 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47266 * 119.99931 * 23 21 19 26 26 H 1.48503 * 109.46741 * 239.99992 * 23 21 19 27 27 C 1.38876 * 119.86128 * 359.70389 * 17 16 15 28 28 C 1.38101 * 119.93201 * 0.02562 * 27 17 16 29 29 H 1.07993 * 119.99991 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.00061 * 180.02562 * 1 2 3 31 31 H 1.08002 * 119.99912 * 179.97438 * 2 1 3 32 32 H 1.09003 * 109.47353 * 4.99935 * 3 2 1 33 33 H 1.08997 * 109.47110 * 245.00102 * 3 2 1 34 34 H 0.97005 * 119.99874 * 0.02562 * 4 3 2 35 35 H 1.09001 * 109.47199 * 300.00033 * 9 7 5 36 36 H 1.09004 * 109.47525 * 60.00114 * 9 7 5 37 37 H 1.09006 * 109.47233 * 179.97438 * 9 7 5 38 38 H 1.09002 * 109.47140 * 299.99861 * 13 11 10 39 39 H 1.09004 * 109.46770 * 59.99728 * 13 11 10 40 40 H 1.08001 * 119.96793 * 359.97438 * 15 14 13 41 41 H 1.08002 * 120.03716 * 180.27841 * 16 15 14 42 42 H 0.97002 * 120.00136 * 180.02562 * 22 21 19 43 43 H 1.07997 * 120.03483 * 179.97438 * 27 17 16 44 44 H 1.08000 * 119.96760 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 3.7789 2.4087 1.3328 6 8 3.7152 3.3556 0.5777 7 6 4.7363 2.4360 2.4964 8 1 4.1898 2.2500 3.4210 9 6 5.8008 1.3536 2.3066 10 8 5.3764 3.7375 2.5660 11 6 5.7431 4.1719 3.7819 12 8 5.5357 3.4877 4.7559 13 6 6.4135 5.5132 3.9322 14 6 6.7198 5.7616 5.3867 15 6 5.7911 6.4005 6.1881 16 6 6.0664 6.6244 7.5227 17 6 7.2821 6.2180 8.0572 18 8 7.5583 6.4424 9.3671 19 6 8.7053 5.9226 9.8487 20 1 9.3958 5.4277 9.1818 21 6 8.9985 6.0234 11.2002 22 7 8.1573 6.6258 12.0126 23 14 10.5880 5.3037 11.8673 24 1 11.3549 4.6835 10.7571 25 1 11.3984 6.3829 12.4869 26 1 10.2741 4.2721 12.8882 27 6 8.2148 5.5817 7.2485 28 6 7.9313 5.3557 5.9160 29 1 -0.5400 0.9352 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8501 -0.9353 0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6213 1.4026 -0.9314 34 1 3.0451 0.5744 1.7352 35 1 5.3202 0.3766 2.2543 36 1 6.3473 1.5396 1.3820 37 1 6.4935 1.3736 3.1480 38 1 7.3404 5.5224 3.3587 39 1 5.7497 6.2947 3.5624 40 1 4.8480 6.7210 5.7707 41 1 5.3390 7.1194 8.1491 42 1 8.3626 6.6967 12.9580 43 1 9.1612 5.2648 7.6611 44 1 8.6564 4.8613 5.2865 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732366612.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:40 Heat of formation + Delta-G solvation = -126.337828 kcal Electronic energy + Delta-G solvation = -26932.165993 eV Core-core repulsion = 22815.252567 eV Total energy + Delta-G solvation = -4116.913426 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.93367 -40.89631 -40.48630 -38.51089 -37.47932 -36.78260 -34.44483 -34.24258 -33.18391 -32.34784 -31.80204 -28.50261 -27.52715 -27.15256 -25.31772 -23.66053 -23.05747 -21.79725 -21.49177 -20.85193 -19.86381 -18.95130 -18.88387 -18.59093 -17.43940 -17.24661 -16.85825 -16.59702 -16.40144 -16.21622 -15.94584 -15.53960 -15.40784 -15.14443 -15.06435 -14.58505 -14.36334 -14.17790 -14.16306 -13.99775 -13.61820 -13.43404 -13.34014 -13.02168 -12.92806 -12.70796 -12.52770 -12.34994 -12.28969 -12.09652 -12.06977 -11.94132 -11.57484 -11.18774 -11.08244 -10.80548 -10.57439 -10.13799 -9.78828 -8.96149 -8.47868 -6.16114 0.54681 0.59770 1.03780 1.20261 1.34927 1.37010 1.41964 1.53257 1.54085 2.17376 2.37019 2.83598 3.15925 3.49459 3.49746 3.69828 3.78266 3.82574 3.87091 4.01381 4.02104 4.14958 4.17501 4.41639 4.53706 4.55966 4.61544 4.61702 4.67100 4.72542 4.78031 4.98888 5.03410 5.05357 5.13908 5.20391 5.26803 5.34435 5.53739 5.64100 5.69907 5.72654 5.75551 6.02188 6.19368 6.33153 6.74312 6.96769 7.02440 7.77108 8.75569 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.023009 B = 0.001840 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.647046 B =15213.339651 C =15394.995840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.181 4.181 3 C 0.146 3.854 4 N -0.707 5.707 5 C 0.520 3.480 6 O -0.562 6.562 7 C 0.063 3.937 8 H 0.112 0.888 9 C -0.159 4.159 10 O -0.340 6.340 11 C 0.464 3.536 12 O -0.526 6.526 13 C -0.049 4.049 14 C -0.158 4.158 15 C -0.054 4.054 16 C -0.206 4.206 17 C 0.117 3.883 18 O -0.232 6.232 19 C -0.414 4.414 20 H 0.103 0.897 21 C -0.024 4.024 22 N -0.920 5.920 23 Si 1.020 2.980 24 H -0.251 1.251 25 H -0.267 1.267 26 H -0.269 1.269 27 C -0.243 4.243 28 C -0.053 4.053 29 H 0.098 0.902 30 H 0.120 0.880 31 H 0.134 0.866 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.419 0.581 35 H 0.110 0.890 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.140 0.860 39 H 0.137 0.863 40 H 0.147 0.853 41 H 0.114 0.886 42 H 0.273 0.727 43 H 0.121 0.879 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.221 -14.826 -25.850 31.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.200 4.200 3 C 0.023 3.977 4 N -0.361 5.361 5 C 0.305 3.695 6 O -0.440 6.440 7 C 0.004 3.996 8 H 0.130 0.870 9 C -0.216 4.216 10 O -0.257 6.257 11 C 0.308 3.692 12 O -0.414 6.414 13 C -0.086 4.086 14 C -0.159 4.159 15 C -0.072 4.072 16 C -0.225 4.225 17 C 0.067 3.933 18 O -0.138 6.138 19 C -0.490 4.490 20 H 0.120 0.880 21 C -0.221 4.221 22 N -0.559 5.559 23 Si 0.839 3.161 24 H -0.174 1.174 25 H -0.192 1.192 26 H -0.194 1.194 27 C -0.263 4.263 28 C -0.070 4.070 29 H 0.116 0.884 30 H 0.138 0.862 31 H 0.152 0.848 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.256 0.744 35 H 0.128 0.872 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.158 0.842 39 H 0.154 0.846 40 H 0.165 0.835 41 H 0.132 0.868 42 H 0.082 0.918 43 H 0.138 0.862 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -9.493 -14.206 -25.747 30.900 hybrid contribution 0.435 -0.445 1.253 1.399 sum -9.058 -14.651 -24.494 29.944 Atomic orbital electron populations 1.24197 0.95814 1.03249 0.96575 1.22944 0.96277 0.97392 1.03345 1.20493 0.91390 0.96840 0.88975 1.45773 1.39722 1.19257 1.31345 1.20314 0.80805 0.82771 0.85560 1.90730 1.68755 1.36620 1.47898 1.22615 0.95332 0.83072 0.98565 0.87039 1.22163 0.98203 0.97380 1.03880 1.86638 1.70318 1.35749 1.32972 1.24427 0.75453 0.89236 0.80092 1.90705 1.52388 1.57948 1.40358 1.20228 1.03853 0.90682 0.93836 1.19137 0.95626 1.05840 0.95263 1.20887 0.98884 0.96073 0.91315 1.20428 0.95804 1.09304 0.96973 1.19959 0.94594 0.93895 0.84881 1.83941 1.41178 1.67708 1.20996 1.21885 0.95990 1.37414 0.93716 0.88019 1.26617 1.03499 0.97209 0.94779 1.70191 1.38195 1.42438 1.05032 0.84514 0.74954 0.77971 0.78652 1.17408 1.19188 1.19421 1.21234 1.01053 1.08362 0.95603 1.20950 0.96711 0.96004 0.93380 0.88383 0.86218 0.84840 0.91955 0.90859 0.74393 0.87161 0.90687 0.91235 0.84187 0.84561 0.83537 0.86821 0.91822 0.86174 0.83917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.95 14.32 67.78 0.97 0.03 16 2 C -0.18 -1.16 9.63 25.64 0.25 -0.91 16 3 C 0.15 1.66 6.11 85.63 0.52 2.18 16 4 N -0.71 -8.51 5.51 -466.79 -2.57 -11.08 16 5 C 0.52 10.34 7.18 87.66 0.63 10.97 16 6 O -0.56 -16.13 16.51 15.72 0.26 -15.87 16 7 C 0.06 1.20 2.97 29.85 0.09 1.29 16 8 H 0.11 2.14 7.16 -2.39 -0.02 2.12 16 9 C -0.16 -2.15 9.50 71.98 0.68 -1.47 16 10 O -0.34 -8.26 9.42 -45.09 -0.42 -8.68 16 11 C 0.46 12.06 7.92 71.24 0.56 12.63 16 12 O -0.53 -17.20 15.25 21.95 0.33 -16.86 16 13 C -0.05 -1.08 5.94 29.10 0.17 -0.91 16 14 C -0.16 -4.95 4.38 -19.84 -0.09 -5.04 16 15 C -0.05 -1.86 9.69 22.25 0.22 -1.64 16 16 C -0.21 -9.06 9.99 22.39 0.22 -8.84 16 17 C 0.12 6.00 6.65 22.58 0.15 6.15 16 18 O -0.23 -14.25 9.76 -22.67 -0.22 -14.47 16 19 C -0.41 -24.50 9.49 67.92 0.64 -23.86 16 20 H 0.10 5.53 5.20 -2.91 -0.02 5.51 16 21 C -0.02 -1.36 5.49 84.84 0.47 -0.89 16 22 N -0.92 -57.17 13.67 21.61 0.30 -56.88 16 23 Si 1.02 43.30 29.55 68.60 2.03 45.33 16 24 H -0.25 -9.81 7.11 99.48 0.71 -9.11 16 25 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 26 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 27 C -0.24 -10.82 9.17 22.39 0.21 -10.62 16 28 C -0.05 -1.83 9.69 22.25 0.22 -1.61 16 29 H 0.10 0.63 7.84 -2.91 -0.02 0.61 16 30 H 0.12 0.37 8.06 -2.91 -0.02 0.34 16 31 H 0.13 0.42 8.06 -2.91 -0.02 0.40 16 32 H 0.06 0.87 7.79 -2.39 -0.02 0.85 16 33 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.42 2.48 8.25 -92.70 -0.76 1.72 16 35 H 0.11 0.75 7.92 -2.39 -0.02 0.73 16 36 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 38 H 0.14 2.25 8.08 -2.39 -0.02 2.23 16 39 H 0.14 2.32 8.08 -2.38 -0.02 2.30 16 40 H 0.15 3.99 8.06 -2.91 -0.02 3.96 16 41 H 0.11 4.95 8.06 -2.91 -0.02 4.93 16 42 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 43 H 0.12 5.41 5.64 -2.91 -0.02 5.39 16 44 H 0.14 3.90 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -83.76 388.12 5.88 -77.89 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: 0.26 Total: 23.16 kcal Atomic # 6 Polarization: -28.46 SS G_CDS: 5.91 Total: -22.54 kcal Atomic # 7 Polarization: -65.68 SS G_CDS: -2.28 Total: -67.96 kcal Atomic # 8 Polarization: -55.83 SS G_CDS: -0.05 Total: -55.88 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -83.76 5.88 -77.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732366612.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.449 kcal (2) G-P(sol) polarization free energy of solvation -83.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds