Wall clock time and date at job start Tue Mar 31 2020 18:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46847 * 2 1 4 4 C 1.52994 * 109.47118 * 240.00390 * 2 1 3 5 5 C 1.50704 * 109.47505 * 64.99957 * 4 2 1 6 6 O 1.20820 * 119.99637 * 0.02562 * 5 4 2 7 7 O 1.34233 * 120.00191 * 180.02562 * 5 4 2 8 8 C 1.45199 * 116.99739 * 179.97438 * 7 5 4 9 9 C 1.50703 * 109.46894 * 179.97438 * 8 7 5 10 10 O 1.21282 * 119.99767 * 0.02562 * 9 8 7 11 11 N 1.34767 * 120.00062 * 180.02562 * 9 8 7 12 12 C 1.46499 * 120.00124 * 180.02562 * 11 9 8 13 13 C 1.50706 * 109.46967 * 179.97438 * 12 11 9 14 14 H 1.07993 * 120.00183 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99714 * 179.97438 * 13 12 11 16 16 N 1.31521 * 120.00133 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00080 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47246 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.47142 * 120.00153 * 17 15 13 20 20 H 1.48495 * 109.47327 * 239.99758 * 17 15 13 21 21 C 1.50698 * 109.47193 * 119.99921 * 2 1 3 22 22 O 1.21252 * 119.99712 * 95.00103 * 21 2 1 23 23 C 1.47166 * 120.00376 * 275.00038 * 21 2 1 24 24 C 1.39847 * 120.17168 * 180.02562 * 23 21 2 25 25 C 1.37886 * 119.82116 * 180.02562 * 24 23 21 26 26 C 1.38406 * 120.17708 * 359.97438 * 25 24 23 27 27 C 1.38403 * 120.34455 * 0.28152 * 26 25 24 28 28 C 1.37892 * 120.17250 * 359.47904 * 27 26 25 29 29 H 1.08998 * 109.47159 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46550 * 300.00173 * 1 2 3 31 31 H 1.09006 * 109.47086 * 59.99673 * 1 2 3 32 32 H 1.09005 * 109.47644 * 185.00036 * 4 2 1 33 33 H 1.09005 * 109.47251 * 304.99689 * 4 2 1 34 34 H 1.08993 * 109.47170 * 300.00020 * 8 7 5 35 35 H 1.09001 * 109.46736 * 60.00525 * 8 7 5 36 36 H 0.97002 * 120.00181 * 359.97438 * 11 9 8 37 37 H 1.08993 * 109.47138 * 299.99357 * 12 11 9 38 38 H 1.08995 * 109.47358 * 59.99732 * 12 11 9 39 39 H 0.97003 * 119.99876 * 179.97438 * 16 15 13 40 40 H 1.07992 * 120.09103 * 359.97438 * 24 23 21 41 41 H 1.08001 * 119.91179 * 179.97438 * 25 24 23 42 42 H 1.08002 * 119.82516 * 179.97438 * 26 25 24 43 43 H 1.08005 * 119.91196 * 179.72500 * 27 26 25 44 44 H 1.07999 * 120.08484 * 180.23018 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 1.6413 0.0572 -2.4766 6 8 1.0141 1.0836 -2.3637 7 8 1.9831 -0.3899 -3.6953 8 6 1.5650 0.4106 -4.8322 9 6 2.0354 -0.2424 -6.1064 10 8 2.6609 -1.2805 -6.0607 11 7 1.7609 0.3272 -7.2966 12 6 2.2177 -0.3079 -8.5353 13 6 1.7839 0.5231 -9.7153 14 1 1.2244 1.4333 -9.5583 15 6 2.1023 0.1217 -10.9954 16 7 2.7841 -0.9866 -11.1866 17 14 1.5652 1.1519 -12.4581 18 1 0.8177 2.3418 -11.9777 19 1 2.7619 1.5935 -13.2186 20 1 0.6898 0.3399 -13.3408 21 6 2.0324 -0.7104 1.2305 22 8 2.3207 -1.8868 1.1760 23 6 2.1729 0.0237 2.4982 24 6 2.6393 -0.6319 3.6420 25 6 2.7677 0.0628 4.8262 26 6 2.4370 1.4055 4.8845 27 6 1.9698 2.0601 3.7581 28 6 1.8405 1.3805 2.5652 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.1264 -0.7994 -1.2057 33 1 1.6054 -1.7197 -1.2952 34 1 0.4779 0.4871 -4.8426 35 1 1.9988 1.4075 -4.7537 36 1 1.2604 1.1573 -7.3332 37 1 3.3048 -0.3848 -8.5247 38 1 1.7837 -1.3046 -8.6140 39 1 3.0077 -1.2692 -12.0872 40 1 2.8973 -1.6796 3.5983 41 1 3.1273 -0.4422 5.7105 42 1 2.5394 1.9440 5.8150 43 1 1.7096 3.1069 3.8126 44 1 1.4793 1.8936 1.6862 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732857721.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:16 Heat of formation + Delta-G solvation = -142.622529 kcal Electronic energy + Delta-G solvation = -26618.448189 eV Core-core repulsion = 22500.828606 eV Total energy + Delta-G solvation = -4117.619584 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.05055 -40.33675 -38.85087 -38.57508 -36.63126 -34.72394 -34.26174 -32.42491 -31.85004 -31.44774 -29.70628 -28.27352 -26.56513 -25.66442 -23.47399 -22.88548 -22.45026 -20.99691 -19.96401 -19.58496 -18.36583 -17.58582 -17.44523 -16.84477 -16.43648 -16.02407 -15.90938 -15.49540 -15.34943 -15.09718 -14.87904 -14.69591 -14.45467 -14.21591 -13.99570 -13.81170 -13.25538 -13.14540 -12.97399 -12.81195 -12.47579 -12.33996 -12.15908 -12.01450 -11.76634 -11.65936 -11.62958 -11.39878 -11.00095 -10.95430 -10.72427 -10.62931 -10.35812 -10.00412 -9.51142 -9.48078 -9.43553 -9.19317 -8.79915 -8.00301 -6.20774 -4.28259 0.17431 0.86179 1.94467 2.04756 2.34310 3.16257 3.21599 3.28762 3.31256 3.31710 3.49854 3.98457 4.12882 4.30217 4.32377 4.42932 4.49798 4.55897 4.66476 4.79516 4.88004 4.93109 5.06088 5.13743 5.15332 5.19316 5.25301 5.27457 5.32383 5.34890 5.45524 5.46657 5.63564 5.80951 5.85726 5.91839 5.93003 6.32964 6.36159 7.06229 7.21461 7.29284 7.44638 7.56407 7.63912 7.90713 8.48481 8.70038 8.95118 9.38275 10.89381 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.036913 B = 0.001585 C = 0.001550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.362325 B =17659.061802 C =18057.061935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 H 0.109 0.891 4 C -0.104 4.104 5 C 0.465 3.535 6 O -0.510 6.510 7 O -0.327 6.327 8 C 0.049 3.951 9 C 0.498 3.502 10 O -0.534 6.534 11 N -0.706 5.706 12 C 0.250 3.750 13 C -0.545 4.545 14 H 0.065 0.935 15 C 0.064 3.936 16 N -0.884 5.884 17 Si 0.905 3.095 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.282 1.282 21 C 0.404 3.596 22 O -0.445 6.445 23 C -0.168 4.168 24 C -0.061 4.061 25 C -0.134 4.134 26 C -0.089 4.089 27 C -0.133 4.133 28 C -0.072 4.072 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.118 0.882 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.393 0.607 37 H 0.030 0.970 38 H 0.030 0.970 39 H 0.266 0.734 40 H 0.134 0.866 41 H 0.129 0.871 42 H 0.127 0.873 43 H 0.130 0.870 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.498 6.707 32.510 33.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.142 4.142 3 H 0.127 0.873 4 C -0.142 4.142 5 C 0.309 3.691 6 O -0.400 6.400 7 O -0.242 6.242 8 C -0.029 4.029 9 C 0.281 3.719 10 O -0.411 6.411 11 N -0.357 5.357 12 C 0.130 3.870 13 C -0.584 4.584 14 H 0.083 0.917 15 C -0.140 4.140 16 N -0.522 5.522 17 Si 0.733 3.267 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.208 1.208 21 C 0.281 3.719 22 O -0.319 6.319 23 C -0.169 4.169 24 C -0.080 4.080 25 C -0.152 4.152 26 C -0.107 4.107 27 C -0.151 4.151 28 C -0.090 4.090 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.130 0.870 33 H 0.136 0.864 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.226 0.774 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.076 0.924 40 H 0.152 0.848 41 H 0.147 0.853 42 H 0.145 0.855 43 H 0.148 0.852 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.986 5.496 32.319 32.919 hybrid contribution -0.528 1.169 -0.890 1.561 sum -3.515 6.665 31.429 32.320 Atomic orbital electron populations 1.21904 0.91326 1.03077 1.04375 1.21448 0.99164 1.01620 0.91944 0.87284 1.21244 1.04578 1.00549 0.87781 1.23599 0.76288 0.84174 0.85087 1.90624 1.37636 1.24503 1.87195 1.86578 1.71618 1.51647 1.14318 1.22876 1.01548 0.94855 0.83597 1.19902 0.81549 0.85858 0.84566 1.90718 1.40148 1.23164 1.87062 1.46362 1.55897 1.27010 1.06394 1.19187 0.95812 0.93834 0.78156 1.21246 1.37211 1.09184 0.90710 0.91704 1.24957 0.94726 0.95213 0.99101 1.69987 1.37804 1.22052 1.22309 0.86333 0.78420 0.80007 0.81979 1.19611 1.20770 1.20761 1.22399 0.73131 0.87779 0.88592 1.90548 1.37753 1.17111 1.86510 1.20465 1.05722 0.95268 0.95418 1.21466 0.94478 1.00440 0.91570 1.21190 1.01220 0.94734 0.98050 1.21476 0.95899 0.94666 0.98633 1.21201 1.00602 1.00529 0.92787 1.21592 0.95796 0.93040 0.98544 0.92089 0.91715 0.89261 0.87047 0.86395 0.88462 0.88474 0.77437 0.95231 0.95230 0.92415 0.84804 0.85319 0.85511 0.85215 0.84643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 8.92 37.16 0.33 -0.84 16 2 C -0.12 -1.01 1.66 -91.77 -0.15 -1.16 16 3 H 0.11 0.78 6.56 -51.93 -0.34 0.44 16 4 C -0.10 -1.01 4.73 -27.88 -0.13 -1.15 16 5 C 0.47 5.78 7.67 36.01 0.28 6.05 16 6 O -0.51 -6.67 13.72 -18.75 -0.26 -6.93 16 7 O -0.33 -5.02 9.76 -45.91 -0.45 -5.47 16 8 C 0.05 0.72 5.94 36.01 0.21 0.93 16 9 C 0.50 9.92 7.91 -10.99 -0.09 9.84 16 10 O -0.53 -13.08 16.50 -14.11 -0.23 -13.32 16 11 N -0.71 -14.49 5.55 -61.48 -0.34 -14.83 16 12 C 0.25 6.53 5.43 -5.19 -0.03 6.50 16 13 C -0.55 -14.55 9.28 -34.44 -0.32 -14.87 16 14 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 15 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 16 N -0.88 -25.79 13.29 55.43 0.74 -25.05 16 17 Si 0.91 20.60 29.54 -169.99 -5.02 15.57 16 18 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 C 0.40 3.65 6.23 -30.69 -0.19 3.46 16 22 O -0.45 -5.20 16.19 5.58 0.09 -5.11 16 23 C -0.17 -1.32 5.87 -105.07 -0.62 -1.94 16 24 C -0.06 -0.46 9.60 -39.11 -0.38 -0.83 16 25 C -0.13 -0.77 10.03 -39.65 -0.40 -1.16 16 26 C -0.09 -0.44 10.04 -39.46 -0.40 -0.84 16 27 C -0.13 -0.70 10.03 -39.65 -0.40 -1.10 16 28 C -0.07 -0.45 9.37 -39.10 -0.37 -0.81 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.82 5.96 -51.93 -0.31 0.51 16 32 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.12 1.13 8.03 -51.93 -0.42 0.72 16 34 H 0.10 1.23 8.13 -51.93 -0.42 0.81 16 35 H 0.10 1.23 8.13 -51.93 -0.42 0.81 16 36 H 0.39 6.72 8.32 -40.82 -0.34 6.38 16 37 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.13 0.99 7.65 -52.49 -0.40 0.58 16 41 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 42 H 0.13 0.35 8.06 -52.49 -0.42 -0.07 16 43 H 0.13 0.42 8.06 -52.48 -0.42 -0.01 16 44 H 0.14 0.65 6.48 -52.49 -0.34 0.31 16 LS Contribution 384.07 15.07 5.79 5.79 Total: -1.00 -34.65 384.07 -8.33 -42.98 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -5.91 Total: 2.62 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: -2.74 Total: 3.74 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: 0.40 Total: -39.88 kcal Atomic # 8 Polarization: -29.98 SS G_CDS: -0.85 Total: -30.83 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.65 -8.33 -42.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732857721.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.642 kcal (2) G-P(sol) polarization free energy of solvation -34.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds