Wall clock time and date at job start Tue Mar 31 2020 18:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46847 * 2 1 4 4 C 1.52994 * 109.47118 * 240.00390 * 2 1 3 5 5 C 1.50704 * 109.47505 * 64.99957 * 4 2 1 6 6 O 1.20820 * 119.99637 * 0.02562 * 5 4 2 7 7 O 1.34233 * 120.00191 * 180.02562 * 5 4 2 8 8 C 1.45199 * 116.99739 * 179.97438 * 7 5 4 9 9 C 1.50703 * 109.46894 * 179.97438 * 8 7 5 10 10 O 1.21282 * 119.99767 * 0.02562 * 9 8 7 11 11 N 1.34767 * 120.00062 * 180.02562 * 9 8 7 12 12 C 1.46499 * 120.00124 * 180.02562 * 11 9 8 13 13 C 1.50706 * 109.46967 * 179.97438 * 12 11 9 14 14 H 1.07993 * 120.00183 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99714 * 179.97438 * 13 12 11 16 16 N 1.31521 * 120.00133 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00080 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47246 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.47142 * 120.00153 * 17 15 13 20 20 H 1.48495 * 109.47327 * 239.99758 * 17 15 13 21 21 C 1.50698 * 109.47193 * 119.99921 * 2 1 3 22 22 O 1.21252 * 119.99712 * 95.00103 * 21 2 1 23 23 C 1.47166 * 120.00376 * 275.00038 * 21 2 1 24 24 C 1.39847 * 120.17168 * 180.02562 * 23 21 2 25 25 C 1.37886 * 119.82116 * 180.02562 * 24 23 21 26 26 C 1.38406 * 120.17708 * 359.97438 * 25 24 23 27 27 C 1.38403 * 120.34455 * 0.28152 * 26 25 24 28 28 C 1.37892 * 120.17250 * 359.47904 * 27 26 25 29 29 H 1.08998 * 109.47159 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46550 * 300.00173 * 1 2 3 31 31 H 1.09006 * 109.47086 * 59.99673 * 1 2 3 32 32 H 1.09005 * 109.47644 * 185.00036 * 4 2 1 33 33 H 1.09005 * 109.47251 * 304.99689 * 4 2 1 34 34 H 1.08993 * 109.47170 * 300.00020 * 8 7 5 35 35 H 1.09001 * 109.46736 * 60.00525 * 8 7 5 36 36 H 0.97002 * 120.00181 * 359.97438 * 11 9 8 37 37 H 1.08993 * 109.47138 * 299.99357 * 12 11 9 38 38 H 1.08995 * 109.47358 * 59.99732 * 12 11 9 39 39 H 0.97003 * 119.99876 * 179.97438 * 16 15 13 40 40 H 1.07992 * 120.09103 * 359.97438 * 24 23 21 41 41 H 1.08001 * 119.91179 * 179.97438 * 25 24 23 42 42 H 1.08002 * 119.82516 * 179.97438 * 26 25 24 43 43 H 1.08005 * 119.91196 * 179.72500 * 27 26 25 44 44 H 1.07999 * 120.08484 * 180.23018 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 1.6413 0.0572 -2.4766 6 8 1.0141 1.0836 -2.3637 7 8 1.9831 -0.3899 -3.6953 8 6 1.5650 0.4106 -4.8322 9 6 2.0354 -0.2424 -6.1064 10 8 2.6609 -1.2805 -6.0607 11 7 1.7609 0.3272 -7.2966 12 6 2.2177 -0.3079 -8.5353 13 6 1.7839 0.5231 -9.7153 14 1 1.2244 1.4333 -9.5583 15 6 2.1023 0.1217 -10.9954 16 7 2.7841 -0.9866 -11.1866 17 14 1.5652 1.1519 -12.4581 18 1 0.8177 2.3418 -11.9777 19 1 2.7619 1.5935 -13.2186 20 1 0.6898 0.3399 -13.3408 21 6 2.0324 -0.7104 1.2305 22 8 2.3207 -1.8868 1.1760 23 6 2.1729 0.0237 2.4982 24 6 2.6393 -0.6319 3.6420 25 6 2.7677 0.0628 4.8262 26 6 2.4370 1.4055 4.8845 27 6 1.9698 2.0601 3.7581 28 6 1.8405 1.3805 2.5652 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.1264 -0.7994 -1.2057 33 1 1.6054 -1.7197 -1.2952 34 1 0.4779 0.4871 -4.8426 35 1 1.9988 1.4075 -4.7537 36 1 1.2604 1.1573 -7.3332 37 1 3.3048 -0.3848 -8.5247 38 1 1.7837 -1.3046 -8.6140 39 1 3.0077 -1.2692 -12.0872 40 1 2.8973 -1.6796 3.5983 41 1 3.1273 -0.4422 5.7105 42 1 2.5394 1.9440 5.8150 43 1 1.7096 3.1069 3.8126 44 1 1.4793 1.8936 1.6862 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732857721.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:15 Heat of formation + Delta-G solvation = -163.744559 kcal Electronic energy + Delta-G solvation = -26619.364109 eV Core-core repulsion = 22500.828606 eV Total energy + Delta-G solvation = -4118.535504 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.97504 -41.15921 -40.36735 -39.20810 -37.75221 -36.19248 -35.49275 -34.42123 -32.37252 -31.88280 -31.02271 -29.46633 -28.16142 -26.30615 -24.71885 -23.92126 -23.25586 -21.90138 -21.64780 -20.26669 -19.30880 -19.03389 -18.38897 -17.91617 -17.74897 -17.18082 -16.88629 -16.56232 -16.48543 -16.37711 -15.97300 -15.84746 -15.29358 -15.10992 -14.85303 -14.61161 -14.50097 -14.22212 -14.06462 -13.86750 -13.71314 -13.57455 -13.43884 -13.04102 -12.90943 -12.75671 -12.60480 -12.31524 -12.22454 -12.20439 -11.94768 -11.85962 -11.62536 -11.47067 -10.92683 -10.83398 -10.69049 -9.95235 -9.94402 -9.93710 -8.29945 -6.46672 -0.35886 0.43025 1.05792 1.21402 1.38621 1.45048 1.45236 1.55441 1.59060 2.32865 2.52700 2.84993 2.93175 3.05551 3.38883 3.65417 3.79617 3.84350 3.87197 4.02668 4.07477 4.07953 4.15464 4.21993 4.35093 4.48384 4.51861 4.56278 4.58759 4.81472 4.89762 4.96907 5.06870 5.09193 5.16963 5.21178 5.35615 5.37169 5.41994 5.46908 5.51724 5.62957 5.81721 5.95708 6.40238 6.56436 6.63104 6.78556 7.20492 7.36020 8.82411 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.036913 B = 0.001585 C = 0.001550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.362325 B =17659.061802 C =18057.061935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 H 0.124 0.876 4 C -0.103 4.103 5 C 0.470 3.530 6 O -0.513 6.513 7 O -0.352 6.352 8 C 0.061 3.939 9 C 0.497 3.503 10 O -0.587 6.587 11 N -0.698 5.698 12 C 0.265 3.735 13 C -0.556 4.556 14 H 0.087 0.913 15 C 0.004 3.996 16 N -0.931 5.931 17 Si 0.986 3.014 18 H -0.252 1.252 19 H -0.280 1.280 20 H -0.280 1.280 21 C 0.409 3.591 22 O -0.482 6.482 23 C -0.189 4.189 24 C -0.080 4.080 25 C -0.139 4.139 26 C -0.086 4.086 27 C -0.136 4.136 28 C -0.073 4.073 29 H 0.055 0.945 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.413 0.587 37 H -0.008 1.008 38 H -0.008 1.008 39 H 0.269 0.731 40 H 0.124 0.876 41 H 0.146 0.854 42 H 0.153 0.847 43 H 0.154 0.846 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.856 9.992 33.937 35.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.136 4.136 3 H 0.142 0.858 4 C -0.140 4.140 5 C 0.315 3.685 6 O -0.402 6.402 7 O -0.268 6.268 8 C -0.016 4.016 9 C 0.283 3.717 10 O -0.467 6.467 11 N -0.349 5.349 12 C 0.143 3.857 13 C -0.594 4.594 14 H 0.105 0.895 15 C -0.196 4.196 16 N -0.569 5.569 17 Si 0.809 3.191 18 H -0.175 1.175 19 H -0.206 1.206 20 H -0.206 1.206 21 C 0.289 3.711 22 O -0.359 6.359 23 C -0.190 4.190 24 C -0.098 4.098 25 C -0.157 4.157 26 C -0.104 4.104 27 C -0.154 4.154 28 C -0.091 4.091 29 H 0.074 0.926 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.144 0.856 35 H 0.145 0.855 36 H 0.249 0.751 37 H 0.010 0.990 38 H 0.010 0.990 39 H 0.078 0.922 40 H 0.142 0.858 41 H 0.164 0.836 42 H 0.171 0.829 43 H 0.172 0.828 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -4.382 8.842 33.789 35.200 hybrid contribution -0.084 0.145 -1.196 1.207 sum -4.466 8.987 32.593 34.103 Atomic orbital electron populations 1.21868 0.90850 1.02903 1.04692 1.21455 0.99456 1.01974 0.90713 0.85801 1.21328 1.05053 1.00376 0.87285 1.23931 0.75876 0.84217 0.84521 1.90618 1.37802 1.24724 1.87043 1.86575 1.72375 1.52531 1.15290 1.22752 1.03102 0.94840 0.80862 1.20792 0.80019 0.85003 0.85901 1.90694 1.42396 1.25674 1.87952 1.46030 1.56049 1.27599 1.05264 1.18638 0.93329 0.92821 0.80960 1.21650 1.37121 1.09766 0.90860 0.89475 1.26064 0.94479 0.96362 1.02664 1.70146 1.39301 1.24232 1.23241 0.85090 0.77993 0.78531 0.77462 1.17529 1.20551 1.20557 1.22629 0.71894 0.87258 0.89305 1.90536 1.39741 1.18581 1.87055 1.20458 1.07464 0.96164 0.94873 1.21559 0.95408 1.00372 0.92500 1.21447 1.00955 0.95350 0.97956 1.21857 0.94440 0.94347 0.99728 1.21558 0.99834 1.01689 0.92323 1.21792 0.95378 0.92283 0.99667 0.92584 0.89966 0.90237 0.86462 0.86543 0.85574 0.85496 0.75055 0.99008 0.99036 0.92229 0.85843 0.83587 0.82883 0.82808 0.83281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 8.92 71.98 0.64 -1.45 16 2 C -0.12 -1.80 1.66 -11.54 -0.02 -1.82 16 3 H 0.12 1.54 6.56 -2.38 -0.02 1.52 16 4 C -0.10 -1.96 4.73 29.85 0.14 -1.82 16 5 C 0.47 11.07 7.67 71.24 0.55 11.62 16 6 O -0.51 -12.25 13.72 21.98 0.30 -11.95 16 7 O -0.35 -10.51 9.76 -45.09 -0.44 -10.95 16 8 C 0.06 1.69 5.94 71.24 0.42 2.12 16 9 C 0.50 19.86 7.91 87.66 0.69 20.56 16 10 O -0.59 -29.86 16.50 15.76 0.26 -29.60 16 11 N -0.70 -28.61 5.55 -466.80 -2.59 -31.20 16 12 C 0.26 14.32 5.43 85.64 0.46 14.79 16 13 C -0.56 -29.67 9.28 25.60 0.24 -29.43 16 14 H 0.09 4.16 7.60 -2.91 -0.02 4.13 16 15 C 0.00 0.22 5.46 84.65 0.46 0.68 16 16 N -0.93 -55.68 13.29 21.45 0.28 -55.39 16 17 Si 0.99 41.74 29.54 68.60 2.03 43.77 16 18 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 19 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 20 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 21 C 0.41 7.36 6.23 28.03 0.17 7.54 16 22 O -0.48 -11.73 16.19 -2.94 -0.05 -11.78 16 23 C -0.19 -2.85 5.87 -20.15 -0.12 -2.97 16 24 C -0.08 -1.19 9.60 22.58 0.22 -0.97 16 25 C -0.14 -1.39 10.03 22.23 0.22 -1.17 16 26 C -0.09 -0.63 10.04 22.35 0.22 -0.40 16 27 C -0.14 -1.04 10.03 22.23 0.22 -0.82 16 28 C -0.07 -0.76 9.37 22.58 0.21 -0.55 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.08 1.33 5.96 -2.38 -0.01 1.32 16 32 H 0.12 2.09 8.14 -2.38 -0.02 2.07 16 33 H 0.12 2.27 8.03 -2.38 -0.02 2.25 16 34 H 0.13 2.82 8.13 -2.39 -0.02 2.80 16 35 H 0.13 2.82 8.13 -2.39 -0.02 2.80 16 36 H 0.41 13.46 8.32 -92.71 -0.77 12.69 16 37 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 38 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 39 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 40 H 0.12 1.97 7.65 -2.91 -0.02 1.95 16 41 H 0.15 0.84 8.06 -2.91 -0.02 0.82 16 42 H 0.15 0.28 8.06 -2.91 -0.02 0.26 16 43 H 0.15 0.40 8.06 -2.91 -0.02 0.38 16 44 H 0.15 1.04 6.48 -2.91 -0.02 1.02 16 Total: -1.00 -78.17 384.07 4.80 -73.36 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: 0.26 Total: 17.84 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: 4.75 Total: 15.90 kcal Atomic # 7 Polarization: -84.29 SS G_CDS: -2.30 Total: -86.60 kcal Atomic # 8 Polarization: -64.35 SS G_CDS: 0.07 Total: -64.28 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -78.17 4.80 -73.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732857721.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.381 kcal (2) G-P(sol) polarization free energy of solvation -78.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds