Wall clock time and date at job start Tue Mar 31 2020 18:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52986 * 1 3 3 H 1.09000 * 109.47707 * 2 1 4 4 C 1.50700 * 109.47269 * 119.99697 * 2 1 3 5 5 H 1.08002 * 120.00031 * 114.20938 * 4 2 1 6 6 C 1.37882 * 120.00056 * 294.21703 * 4 2 1 7 7 N 1.31517 * 119.99734 * 157.16424 * 6 4 2 8 8 Si 1.86794 * 119.99888 * 337.44058 * 6 4 2 9 9 H 1.48503 * 109.47205 * 179.72162 * 8 6 4 10 10 H 1.48494 * 109.47361 * 299.72456 * 8 6 4 11 11 H 1.48503 * 109.46977 * 59.72339 * 8 6 4 12 12 O 1.45202 * 109.47473 * 239.99348 * 2 1 3 13 13 C 1.34238 * 116.99346 * 90.00247 * 12 2 1 14 14 O 1.20822 * 120.00389 * 359.97438 * 13 12 2 15 15 C 1.50701 * 119.99523 * 180.02562 * 13 12 2 16 16 C 1.53001 * 109.46915 * 179.97438 * 15 13 12 17 17 H 1.08997 * 109.47447 * 304.99952 * 16 15 13 18 18 C 1.50704 * 109.46986 * 184.99887 * 16 15 13 19 19 C 1.38231 * 119.99996 * 285.52801 * 18 16 15 20 20 C 1.38240 * 119.99864 * 179.78838 * 19 18 16 21 21 C 1.38234 * 119.99813 * 0.44324 * 20 19 18 22 22 C 1.38232 * 120.00270 * 359.81235 * 21 20 19 23 23 C 1.38234 * 119.99935 * 359.97438 * 22 21 20 24 24 N 1.46499 * 109.46908 * 65.00053 * 16 15 13 25 25 C 1.47085 * 125.56245 * 8.05465 * 24 16 15 26 26 C 1.54090 * 103.78050 * 179.97438 * 25 24 16 27 27 O 1.45706 * 104.00643 * 359.97438 * 26 25 24 28 28 C 1.33776 * 109.47414 * 359.76069 * 27 26 25 29 29 O 1.21508 * 123.06769 * 180.23910 * 28 27 26 30 30 H 1.09003 * 109.47417 * 53.88305 * 1 2 3 31 31 H 1.09001 * 109.47711 * 173.88398 * 1 2 3 32 32 H 1.09000 * 109.47785 * 293.88684 * 1 2 3 33 33 H 0.96992 * 120.00304 * 355.22419 * 7 6 4 34 34 H 1.09002 * 109.47220 * 300.00115 * 15 13 12 35 35 H 1.09006 * 109.47112 * 59.99929 * 15 13 12 36 36 H 1.08000 * 120.00104 * 0.02562 * 19 18 16 37 37 H 1.07997 * 119.99858 * 180.27674 * 20 19 18 38 38 H 1.08000 * 119.99832 * 179.83679 * 21 20 19 39 39 H 1.07994 * 120.00334 * 179.97438 * 22 21 20 40 40 H 1.07998 * 120.00194 * 179.97438 * 23 22 21 41 41 H 1.09003 * 110.56618 * 298.55122 * 25 24 16 42 42 H 1.08993 * 110.56916 * 61.40432 * 25 24 16 43 43 H 1.08995 * 110.52888 * 118.62825 * 26 25 24 44 44 H 1.09000 * 110.52058 * 241.23419 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 1.2305 5 1 2.5739 -1.6397 1.1342 6 6 1.8003 -0.1738 2.4793 7 7 1.8156 -0.9493 3.5413 8 14 1.4566 1.6532 2.6617 9 1 1.2356 1.9747 4.0945 10 1 2.6169 2.4283 2.1537 11 1 0.2440 2.0090 1.8818 12 8 2.0140 -0.6846 -1.1855 13 6 2.2171 0.0639 -2.2811 14 8 1.9973 1.2516 -2.2507 15 6 2.7183 -0.5774 -3.5494 16 6 2.8625 0.4887 -4.6374 17 1 1.9147 1.0127 -4.7605 18 6 3.2452 -0.1695 -5.9379 19 6 4.5330 -0.6362 -6.1237 20 6 4.8829 -1.2439 -7.3150 21 6 3.9474 -1.3766 -8.3240 22 6 2.6610 -0.9051 -8.1403 23 6 2.3099 -0.3014 -6.9473 24 7 3.9024 1.4448 -4.2494 25 6 4.8038 1.3068 -3.0954 26 6 5.6794 2.5731 -3.1600 27 8 5.1851 3.2842 -4.3318 28 6 4.1919 2.5846 -4.8919 29 8 3.6034 2.9512 -5.8898 30 1 -0.3634 0.6057 -0.8302 31 1 -0.3634 -1.0218 -0.1095 32 1 -0.3635 0.4161 0.9396 33 1 1.9210 -1.9082 3.4402 34 1 3.6872 -1.0411 -3.3638 35 1 2.0088 -1.3371 -3.8773 36 1 5.2648 -0.5296 -5.3366 37 1 5.8878 -1.6126 -7.4584 38 1 4.2214 -1.8490 -9.2558 39 1 1.9303 -1.0084 -8.9287 40 1 1.3050 0.0673 -6.8039 41 1 4.2349 1.2816 -2.1659 42 1 5.4177 0.4116 -3.1939 43 1 5.5458 3.1764 -2.2621 44 1 6.7285 2.3062 -3.2873 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733710772.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:12 Heat of formation + Delta-G solvation = -124.705676 kcal Electronic energy + Delta-G solvation = -29484.466173 eV Core-core repulsion = 25367.623523 eV Total energy + Delta-G solvation = -4116.842651 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.74197 -40.03128 -39.36338 -37.09051 -36.68875 -35.56314 -33.38887 -32.73627 -31.08830 -30.77092 -29.81984 -29.54127 -25.60589 -25.00223 -23.52696 -22.86359 -22.25224 -21.72822 -20.33139 -19.69063 -18.04015 -17.66530 -17.52630 -17.05764 -16.82852 -16.55774 -15.83684 -15.69432 -15.19535 -14.95781 -14.74532 -14.15889 -14.10794 -13.95921 -13.62884 -13.54495 -13.23841 -13.05230 -12.84912 -12.82947 -12.62455 -12.36387 -12.17327 -11.89101 -11.71668 -11.56859 -11.34586 -11.19572 -10.69996 -10.68337 -10.54900 -10.26133 -10.19725 -9.91777 -9.84303 -9.13084 -9.10488 -9.07736 -8.84668 -8.43436 -6.75626 -4.34830 1.06989 1.22733 2.39184 2.60600 2.79677 3.20776 3.26688 3.32390 3.42128 3.48094 3.63805 4.08824 4.26734 4.29534 4.44551 4.62321 4.66683 4.79967 4.89386 4.91599 4.96071 5.03830 5.12287 5.23265 5.27113 5.34380 5.40004 5.42227 5.58038 5.67191 5.76166 5.85484 6.09635 6.22137 6.25076 6.31511 6.35052 6.37860 6.46574 6.58953 6.78593 7.04393 7.22773 7.34563 7.70741 8.06153 8.13519 8.30297 8.71978 9.30691 10.65135 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.015512 B = 0.003527 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.662913 B = 7936.520574 C = 8827.139417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.199 3.801 3 H 0.037 0.963 4 C -0.617 4.617 5 H 0.069 0.931 6 C 0.047 3.953 7 N -0.884 5.884 8 Si 1.029 2.971 9 H -0.278 1.278 10 H -0.279 1.279 11 H -0.274 1.274 12 O -0.343 6.343 13 C 0.447 3.553 14 O -0.513 6.513 15 C -0.123 4.123 16 C 0.237 3.763 17 H 0.102 0.898 18 C -0.098 4.098 19 C -0.099 4.099 20 C -0.122 4.122 21 C -0.116 4.116 22 C -0.119 4.119 23 C -0.095 4.095 24 N -0.613 5.613 25 C 0.055 3.945 26 C 0.046 3.954 27 O -0.330 6.330 28 C 0.649 3.351 29 O -0.522 6.522 30 H 0.030 0.970 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.274 0.726 34 H 0.111 0.889 35 H 0.123 0.877 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.100 0.900 42 H 0.090 0.910 43 H 0.108 0.892 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.600 -1.005 -18.679 19.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.145 3.855 3 H 0.055 0.945 4 C -0.654 4.654 5 H 0.088 0.912 6 C -0.161 4.161 7 N -0.516 5.516 8 Si 0.856 3.144 9 H -0.203 1.203 10 H -0.205 1.205 11 H -0.200 1.200 12 O -0.258 6.258 13 C 0.290 3.710 14 O -0.403 6.403 15 C -0.161 4.161 16 C 0.136 3.864 17 H 0.120 0.880 18 C -0.099 4.099 19 C -0.118 4.118 20 C -0.140 4.140 21 C -0.135 4.135 22 C -0.137 4.137 23 C -0.113 4.113 24 N -0.360 5.360 25 C -0.068 4.068 26 C -0.029 4.029 27 O -0.240 6.240 28 C 0.403 3.597 29 O -0.407 6.407 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.129 0.871 35 H 0.141 0.859 36 H 0.136 0.864 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.143 0.857 41 H 0.118 0.882 42 H 0.108 0.892 43 H 0.126 0.874 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 6.033 0.926 -18.033 19.038 hybrid contribution 0.289 -1.315 -0.846 1.590 sum 6.322 -0.389 -18.879 19.913 Atomic orbital electron populations 1.22501 0.98001 1.00996 1.00816 1.20881 0.90995 0.93831 0.79775 0.94535 1.21846 1.42461 1.11558 0.89504 0.91247 1.25615 0.93223 1.05927 0.91317 1.70855 1.42484 1.06840 1.31392 0.84247 0.77775 0.75569 0.76849 1.20314 1.20491 1.19973 1.86571 1.75479 1.42984 1.20798 1.23250 0.75247 0.86179 0.86311 1.90661 1.48401 1.16610 1.84623 1.21689 1.05280 0.98823 0.90334 1.19411 0.90272 0.87067 0.89689 0.87984 1.20015 0.94786 0.99572 0.95540 1.20917 0.95590 0.97623 0.97637 1.21108 0.99530 0.99685 0.93647 1.21173 0.93641 0.99714 0.98932 1.21120 0.96626 0.98715 0.97273 1.21009 0.99398 0.98118 0.92788 1.47852 1.36968 1.22377 1.28760 1.22970 0.92842 0.99049 0.91988 1.24241 0.99004 0.91877 0.87773 1.87254 1.48757 1.45984 1.42052 1.18329 0.79293 0.79336 0.82734 1.91018 1.52874 1.72368 1.24397 0.95054 0.92686 0.91252 0.91587 0.87112 0.85870 0.86432 0.86052 0.86111 0.85857 0.85689 0.88216 0.89219 0.87425 0.87700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.64 9.27 37.15 0.34 -3.30 16 2 C 0.20 4.71 2.15 -27.89 -0.06 4.65 16 3 H 0.04 0.90 5.73 -51.93 -0.30 0.60 16 4 C -0.62 -16.66 9.11 -34.44 -0.31 -16.98 16 5 H 0.07 2.01 8.06 -52.49 -0.42 1.59 16 6 C 0.05 1.28 5.21 -17.82 -0.09 1.19 16 7 N -0.88 -25.57 13.70 55.43 0.76 -24.81 16 8 Si 1.03 23.92 26.43 -169.99 -4.49 19.43 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.27 -6.00 6.10 56.52 0.34 -5.66 16 12 O -0.34 -7.14 9.86 -39.28 -0.39 -7.53 16 13 C 0.45 7.71 6.29 36.01 0.23 7.93 16 14 O -0.51 -10.04 13.44 -18.75 -0.25 -10.30 16 15 C -0.12 -1.49 4.82 -27.88 -0.13 -1.62 16 16 C 0.24 3.02 2.10 -69.08 -0.15 2.87 16 17 H 0.10 1.45 7.76 -51.93 -0.40 1.05 16 18 C -0.10 -1.13 4.58 -104.62 -0.48 -1.61 16 19 C -0.10 -1.04 9.28 -39.58 -0.37 -1.41 16 20 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 21 C -0.12 -1.05 10.05 -39.59 -0.40 -1.45 16 22 C -0.12 -1.14 10.05 -39.59 -0.40 -1.53 16 23 C -0.09 -1.03 9.67 -39.58 -0.38 -1.41 16 24 N -0.61 -8.31 1.97 -172.56 -0.34 -8.64 16 25 C 0.05 0.61 5.90 -3.15 -0.02 0.59 16 26 C 0.05 0.45 8.23 37.73 0.31 0.76 16 27 O -0.33 -4.76 11.09 -37.84 -0.42 -5.18 16 28 C 0.65 10.51 8.64 53.71 0.46 10.97 16 29 O -0.52 -10.15 17.54 -19.11 -0.34 -10.48 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.07 1.56 5.42 -51.93 -0.28 1.27 16 33 H 0.27 7.85 8.73 -40.82 -0.36 7.49 16 34 H 0.11 1.12 7.45 -51.93 -0.39 0.74 16 35 H 0.12 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.12 1.09 7.68 -52.49 -0.40 0.69 16 37 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 38 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 40 H 0.13 1.22 8.00 -52.49 -0.42 0.80 16 41 H 0.10 1.35 5.64 -51.93 -0.29 1.06 16 42 H 0.09 0.73 7.68 -51.93 -0.40 0.33 16 43 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 366.76 15.07 5.53 5.53 Total: -1.00 -34.17 366.76 -7.68 -41.85 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -5.90 Total: 2.02 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -1.84 Total: -1.88 kcal Atomic # 7 Polarization: -33.88 SS G_CDS: 0.42 Total: -33.46 kcal Atomic # 8 Polarization: -32.09 SS G_CDS: -1.39 Total: -33.49 kcal Atomic # 14 Polarization: 23.92 SS G_CDS: -4.49 Total: 19.43 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.17 -7.68 -41.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733710772.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.858 kcal (2) G-P(sol) polarization free energy of solvation -34.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds