Wall clock time and date at job start Tue Mar 31 2020 18:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52986 * 1 3 3 H 1.09000 * 109.47707 * 2 1 4 4 C 1.50700 * 109.47269 * 119.99697 * 2 1 3 5 5 H 1.08002 * 120.00031 * 114.20938 * 4 2 1 6 6 C 1.37882 * 120.00056 * 294.21703 * 4 2 1 7 7 N 1.31517 * 119.99734 * 157.16424 * 6 4 2 8 8 Si 1.86794 * 119.99888 * 337.44058 * 6 4 2 9 9 H 1.48503 * 109.47205 * 179.72162 * 8 6 4 10 10 H 1.48494 * 109.47361 * 299.72456 * 8 6 4 11 11 H 1.48503 * 109.46977 * 59.72339 * 8 6 4 12 12 O 1.45202 * 109.47473 * 239.99348 * 2 1 3 13 13 C 1.34238 * 116.99346 * 90.00247 * 12 2 1 14 14 O 1.20822 * 120.00389 * 359.97438 * 13 12 2 15 15 C 1.50701 * 119.99523 * 180.02562 * 13 12 2 16 16 C 1.53001 * 109.46915 * 179.97438 * 15 13 12 17 17 H 1.08997 * 109.47447 * 304.99952 * 16 15 13 18 18 C 1.50704 * 109.46986 * 184.99887 * 16 15 13 19 19 C 1.38231 * 119.99996 * 285.52801 * 18 16 15 20 20 C 1.38240 * 119.99864 * 179.78838 * 19 18 16 21 21 C 1.38234 * 119.99813 * 0.44324 * 20 19 18 22 22 C 1.38232 * 120.00270 * 359.81235 * 21 20 19 23 23 C 1.38234 * 119.99935 * 359.97438 * 22 21 20 24 24 N 1.46499 * 109.46908 * 65.00053 * 16 15 13 25 25 C 1.47085 * 125.56245 * 8.05465 * 24 16 15 26 26 C 1.54090 * 103.78050 * 179.97438 * 25 24 16 27 27 O 1.45706 * 104.00643 * 359.97438 * 26 25 24 28 28 C 1.33776 * 109.47414 * 359.76069 * 27 26 25 29 29 O 1.21508 * 123.06769 * 180.23910 * 28 27 26 30 30 H 1.09003 * 109.47417 * 53.88305 * 1 2 3 31 31 H 1.09001 * 109.47711 * 173.88398 * 1 2 3 32 32 H 1.09000 * 109.47785 * 293.88684 * 1 2 3 33 33 H 0.96992 * 120.00304 * 355.22419 * 7 6 4 34 34 H 1.09002 * 109.47220 * 300.00115 * 15 13 12 35 35 H 1.09006 * 109.47112 * 59.99929 * 15 13 12 36 36 H 1.08000 * 120.00104 * 0.02562 * 19 18 16 37 37 H 1.07997 * 119.99858 * 180.27674 * 20 19 18 38 38 H 1.08000 * 119.99832 * 179.83679 * 21 20 19 39 39 H 1.07994 * 120.00334 * 179.97438 * 22 21 20 40 40 H 1.07998 * 120.00194 * 179.97438 * 23 22 21 41 41 H 1.09003 * 110.56618 * 298.55122 * 25 24 16 42 42 H 1.08993 * 110.56916 * 61.40432 * 25 24 16 43 43 H 1.08995 * 110.52888 * 118.62825 * 26 25 24 44 44 H 1.09000 * 110.52058 * 241.23419 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 1.2305 5 1 2.5739 -1.6397 1.1342 6 6 1.8003 -0.1738 2.4793 7 7 1.8156 -0.9493 3.5413 8 14 1.4566 1.6532 2.6617 9 1 1.2356 1.9747 4.0945 10 1 2.6169 2.4283 2.1537 11 1 0.2440 2.0090 1.8818 12 8 2.0140 -0.6846 -1.1855 13 6 2.2171 0.0639 -2.2811 14 8 1.9973 1.2516 -2.2507 15 6 2.7183 -0.5774 -3.5494 16 6 2.8625 0.4887 -4.6374 17 1 1.9147 1.0127 -4.7605 18 6 3.2452 -0.1695 -5.9379 19 6 4.5330 -0.6362 -6.1237 20 6 4.8829 -1.2439 -7.3150 21 6 3.9474 -1.3766 -8.3240 22 6 2.6610 -0.9051 -8.1403 23 6 2.3099 -0.3014 -6.9473 24 7 3.9024 1.4448 -4.2494 25 6 4.8038 1.3068 -3.0954 26 6 5.6794 2.5731 -3.1600 27 8 5.1851 3.2842 -4.3318 28 6 4.1919 2.5846 -4.8919 29 8 3.6034 2.9512 -5.8898 30 1 -0.3634 0.6057 -0.8302 31 1 -0.3634 -1.0218 -0.1095 32 1 -0.3635 0.4161 0.9396 33 1 1.9210 -1.9082 3.4402 34 1 3.6872 -1.0411 -3.3638 35 1 2.0088 -1.3371 -3.8773 36 1 5.2648 -0.5296 -5.3366 37 1 5.8878 -1.6126 -7.4584 38 1 4.2214 -1.8490 -9.2558 39 1 1.9303 -1.0084 -8.9287 40 1 1.3050 0.0673 -6.8039 41 1 4.2349 1.2816 -2.1659 42 1 5.4177 0.4116 -3.1939 43 1 5.5458 3.1764 -2.2621 44 1 6.7285 2.3062 -3.2873 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733710772.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:11 Heat of formation + Delta-G solvation = -144.662879 kcal Electronic energy + Delta-G solvation = -29485.331582 eV Core-core repulsion = 25367.623523 eV Total energy + Delta-G solvation = -4117.708060 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.81738 -41.43970 -40.22816 -38.29642 -38.06801 -36.84186 -35.37504 -33.71745 -32.50936 -31.80124 -30.88184 -30.49569 -27.08236 -26.52649 -24.56678 -23.63214 -23.25134 -23.13968 -21.62697 -21.01973 -19.87189 -18.96487 -18.60190 -18.31854 -17.91362 -17.46287 -17.20352 -17.06302 -16.12056 -15.97020 -15.76668 -15.65766 -15.15347 -15.04410 -14.93839 -14.89995 -14.55672 -14.25639 -14.20148 -13.95860 -13.71872 -13.53909 -13.30844 -13.23456 -13.19750 -12.87118 -12.52591 -12.14581 -12.12205 -11.91834 -11.88664 -11.80721 -11.69941 -11.61928 -11.44942 -11.07866 -10.54179 -10.07600 -9.81985 -9.69191 -8.93241 -6.53000 0.30082 0.49995 1.21389 1.37722 1.42561 1.44941 1.60680 1.65264 1.86555 2.36663 2.50253 2.84044 2.86096 3.21764 3.31631 3.52471 3.72474 3.83335 3.96582 4.07965 4.14115 4.14503 4.26400 4.29449 4.32541 4.40000 4.49574 4.53182 4.60400 4.62029 4.65997 4.69575 4.77449 4.85631 5.02661 5.12575 5.25662 5.27647 5.46925 5.53983 5.60953 5.63527 5.85457 5.95459 6.08304 6.26855 6.40931 6.85997 6.88652 7.21122 8.47111 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.015512 B = 0.003527 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.662913 B = 7936.520574 C = 8827.139417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.200 3.800 3 H 0.032 0.968 4 C -0.622 4.622 5 H 0.037 0.963 6 C 0.007 3.993 7 N -0.912 5.912 8 Si 1.063 2.937 9 H -0.276 1.276 10 H -0.264 1.264 11 H -0.252 1.252 12 O -0.355 6.355 13 C 0.449 3.551 14 O -0.536 6.536 15 C -0.108 4.108 16 C 0.239 3.761 17 H 0.079 0.921 18 C -0.111 4.111 19 C -0.109 4.109 20 C -0.127 4.127 21 C -0.119 4.119 22 C -0.126 4.126 23 C -0.113 4.113 24 N -0.608 5.608 25 C 0.050 3.950 26 C 0.044 3.956 27 O -0.345 6.345 28 C 0.644 3.356 29 O -0.567 6.567 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.263 0.737 34 H 0.138 0.862 35 H 0.148 0.852 36 H 0.129 0.871 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.142 0.858 40 H 0.126 0.874 41 H 0.075 0.925 42 H 0.127 0.873 43 H 0.114 0.886 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.672 -1.187 -20.243 21.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.146 3.854 3 H 0.050 0.950 4 C -0.659 4.659 5 H 0.055 0.945 6 C -0.195 4.195 7 N -0.545 5.545 8 Si 0.884 3.116 9 H -0.201 1.201 10 H -0.189 1.189 11 H -0.177 1.177 12 O -0.271 6.271 13 C 0.294 3.706 14 O -0.427 6.427 15 C -0.145 4.145 16 C 0.138 3.862 17 H 0.097 0.903 18 C -0.112 4.112 19 C -0.127 4.127 20 C -0.144 4.144 21 C -0.137 4.137 22 C -0.144 4.144 23 C -0.132 4.132 24 N -0.354 5.354 25 C -0.072 4.072 26 C -0.029 4.029 27 O -0.255 6.255 28 C 0.398 3.602 29 O -0.455 6.455 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.156 0.844 35 H 0.166 0.834 36 H 0.147 0.853 37 H 0.162 0.838 38 H 0.164 0.836 39 H 0.160 0.840 40 H 0.144 0.856 41 H 0.093 0.907 42 H 0.145 0.855 43 H 0.133 0.867 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 7.122 0.716 -19.594 20.861 hybrid contribution 0.025 -1.330 -0.420 1.395 sum 7.147 -0.614 -20.015 21.261 Atomic orbital electron populations 1.22397 0.96662 1.01524 1.01233 1.20565 0.91857 0.93005 0.79962 0.95026 1.21951 1.41964 1.10490 0.91492 0.94510 1.26820 0.92496 1.09097 0.91114 1.70955 1.44841 1.06384 1.32342 0.83810 0.79151 0.71306 0.77343 1.20095 1.18912 1.17681 1.86547 1.76077 1.43382 1.21107 1.24134 0.74172 0.85894 0.86450 1.90654 1.49378 1.17829 1.84865 1.21779 1.06980 0.98723 0.87063 1.19363 0.89331 0.86804 0.90719 0.90294 1.19912 0.95684 1.00612 0.95008 1.21114 0.95251 0.97717 0.98619 1.21444 1.00724 0.99090 0.93192 1.21548 0.93262 0.99002 0.99855 1.21413 0.97566 0.98212 0.97201 1.21201 0.99649 0.98833 0.93497 1.47957 1.37016 1.21641 1.28785 1.23175 0.92691 1.01414 0.89934 1.24637 1.00724 0.90986 0.86602 1.87215 1.48282 1.46665 1.43379 1.18492 0.79350 0.79779 0.82538 1.90967 1.54545 1.73516 1.26476 0.93321 0.92452 0.91789 0.92811 0.84433 0.83403 0.85297 0.83795 0.83645 0.83975 0.85642 0.90667 0.85522 0.86747 0.83604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.88 9.27 71.98 0.67 -6.21 16 2 C 0.20 9.38 2.15 29.84 0.06 9.45 16 3 H 0.03 1.53 5.73 -2.39 -0.01 1.51 16 4 C -0.62 -33.99 9.11 25.60 0.23 -33.76 16 5 H 0.04 2.20 8.06 -2.91 -0.02 2.17 16 6 C 0.01 0.39 5.21 84.66 0.44 0.83 16 7 N -0.91 -53.65 13.70 21.45 0.29 -53.36 16 8 Si 1.06 47.47 26.43 68.60 1.81 49.29 16 9 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 10 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 11 H -0.25 -10.34 6.10 99.48 0.61 -9.74 16 12 O -0.36 -14.52 9.86 -51.49 -0.51 -15.02 16 13 C 0.45 14.95 6.29 71.24 0.45 15.40 16 14 O -0.54 -20.69 13.44 21.97 0.30 -20.39 16 15 C -0.11 -2.40 4.82 29.85 0.14 -2.25 16 16 C 0.24 5.87 2.10 44.25 0.09 5.96 16 17 H 0.08 2.29 7.76 -2.39 -0.02 2.27 16 18 C -0.11 -2.42 4.58 -19.86 -0.09 -2.51 16 19 C -0.11 -2.03 9.28 22.27 0.21 -1.82 16 20 C -0.13 -2.02 10.05 22.27 0.22 -1.80 16 21 C -0.12 -1.83 10.05 22.27 0.22 -1.60 16 22 C -0.13 -2.17 10.05 22.27 0.22 -1.95 16 23 C -0.11 -2.36 9.67 22.27 0.22 -2.15 16 24 N -0.61 -15.83 1.97 -931.56 -1.83 -17.66 16 25 C 0.05 1.02 5.90 86.64 0.51 1.53 16 26 C 0.04 0.77 8.23 72.35 0.60 1.36 16 27 O -0.35 -9.63 11.09 -47.36 -0.53 -10.16 16 28 C 0.64 20.69 8.64 129.91 1.12 21.81 16 29 O -0.57 -22.50 17.54 19.66 0.34 -22.15 16 30 H 0.05 1.88 8.14 -2.39 -0.02 1.87 16 31 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.06 2.78 5.42 -2.39 -0.01 2.77 16 33 H 0.26 15.54 8.73 -92.71 -0.81 14.73 16 34 H 0.14 2.36 7.45 -2.39 -0.02 2.34 16 35 H 0.15 2.62 8.14 -2.38 -0.02 2.60 16 36 H 0.13 2.00 7.68 -2.91 -0.02 1.97 16 37 H 0.14 1.58 8.06 -2.91 -0.02 1.55 16 38 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 39 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 40 H 0.13 2.45 8.00 -2.91 -0.02 2.43 16 41 H 0.08 1.94 5.64 -2.39 -0.01 1.93 16 42 H 0.13 1.60 7.68 -2.39 -0.02 1.58 16 43 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.15 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -76.42 366.76 6.09 -70.34 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: 0.88 Total: 16.83 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: 5.32 Total: 2.29 kcal Atomic # 7 Polarization: -69.48 SS G_CDS: -1.54 Total: -71.02 kcal Atomic # 8 Polarization: -67.33 SS G_CDS: -0.39 Total: -67.73 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 1.81 Total: 49.29 kcal Total: -76.42 6.09 -70.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733710772.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.324 kcal (2) G-P(sol) polarization free energy of solvation -76.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds