Wall clock time and date at job start Tue Mar 31 2020 18:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47007 * 2 1 4 4 C 1.50693 * 109.47319 * 120.00561 * 2 1 3 5 5 H 1.07995 * 120.00174 * 119.99656 * 4 2 1 6 6 C 1.37879 * 119.99881 * 300.00178 * 4 2 1 7 7 N 1.31517 * 119.99882 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00176 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47007 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47495 * 119.99493 * 8 6 4 11 11 H 1.48501 * 109.47185 * 239.99568 * 8 6 4 12 12 O 1.45205 * 109.46746 * 240.00355 * 2 1 3 13 13 C 1.34234 * 116.99737 * 90.00109 * 12 2 1 14 14 O 1.20824 * 120.00221 * 359.97438 * 13 12 2 15 15 C 1.50698 * 119.99662 * 179.97438 * 13 12 2 16 16 C 1.53001 * 109.47018 * 180.02562 * 15 13 12 17 17 H 1.08998 * 109.47032 * 54.99942 * 16 15 13 18 18 C 1.50706 * 109.46938 * 175.00469 * 16 15 13 19 19 C 1.38230 * 120.00069 * 64.52736 * 18 16 15 20 20 C 1.38241 * 119.99420 * 179.80957 * 19 18 16 21 21 C 1.38228 * 120.00381 * 0.39759 * 20 19 18 22 22 C 1.38237 * 119.99750 * 359.85810 * 21 20 19 23 23 C 1.38233 * 120.00143 * 359.95403 * 22 21 20 24 24 N 1.46500 * 109.46865 * 294.99877 * 16 15 13 25 25 C 1.47091 * 125.56256 * 320.69517 * 24 16 15 26 26 C 1.54090 * 103.77592 * 179.97438 * 25 24 16 27 27 O 1.45703 * 104.00960 * 0.02562 * 26 25 24 28 28 C 1.33770 * 109.47605 * 359.75699 * 27 26 25 29 29 O 1.21517 * 123.07214 * 180.24667 * 28 27 26 30 30 H 1.09003 * 109.46997 * 299.99799 * 1 2 3 31 31 H 1.09004 * 109.47527 * 59.99479 * 1 2 3 32 32 H 1.08998 * 109.47356 * 179.97438 * 1 2 3 33 33 H 0.97003 * 119.99802 * 180.02562 * 7 6 4 34 34 H 1.08998 * 109.47520 * 300.00178 * 15 13 12 35 35 H 1.09005 * 109.46957 * 59.99804 * 15 13 12 36 36 H 1.08000 * 120.00269 * 0.02562 * 19 18 16 37 37 H 1.08000 * 119.99549 * 180.23254 * 20 19 18 38 38 H 1.07995 * 120.00558 * 179.83376 * 21 20 19 39 39 H 1.08005 * 119.99912 * 179.97438 * 22 21 20 40 40 H 1.08006 * 119.99826 * 180.02562 * 23 22 21 41 41 H 1.08994 * 110.56302 * 298.54720 * 25 24 16 42 42 H 1.08995 * 110.56693 * 61.25627 * 25 24 16 43 43 H 1.09003 * 110.52154 * 118.63120 * 26 25 24 44 44 H 1.08998 * 110.52109 * 241.36987 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2396 2.4826 7 7 0.9435 0.8300 2.6034 8 14 2.3225 -1.1198 4.0078 9 1 3.1475 -2.2866 3.6035 10 1 3.1474 -0.1861 4.8160 11 1 1.1679 -1.5869 4.8164 12 8 2.0139 -0.6844 -1.1857 13 6 2.2170 0.0642 -2.2812 14 8 1.9973 1.2519 -2.2506 15 6 2.7191 -0.5768 -3.5493 16 6 2.8642 0.4895 -4.6369 17 1 3.5037 1.2941 -4.2738 18 6 3.4813 -0.1271 -5.8658 19 6 2.8021 -1.1100 -6.5612 20 6 3.3665 -1.6727 -7.6907 21 6 4.6135 -1.2585 -8.1200 22 6 5.2949 -0.2794 -7.4215 23 6 4.7289 0.2861 -6.2942 24 7 1.5437 1.0285 -4.9715 25 6 0.3022 0.2466 -5.0767 26 6 -0.7628 1.2972 -5.4461 27 8 -0.0175 2.5475 -5.5102 28 6 1.2690 2.3150 -5.2270 29 8 2.1121 3.1899 -5.2061 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 0.7095 1.1615 3.4845 34 1 3.6882 -1.0398 -3.3634 35 1 2.0102 -1.3370 -3.8775 36 1 1.8292 -1.4357 -6.2241 37 1 2.8343 -2.4380 -8.2362 38 1 5.0556 -1.7001 -9.0008 39 1 6.2693 0.0440 -7.7566 40 1 5.2611 1.0514 -5.7487 41 1 0.3880 -0.5041 -5.8622 42 1 0.0642 -0.2241 -4.1229 43 1 -1.2066 1.0672 -6.4148 44 1 -1.5316 1.3493 -4.6752 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733710773.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:15 Heat of formation + Delta-G solvation = -146.816338 kcal Electronic energy + Delta-G solvation = -29340.699962 eV Core-core repulsion = 25222.898521 eV Total energy + Delta-G solvation = -4117.801441 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.74747 -41.32641 -40.22325 -38.32644 -37.91338 -36.85923 -35.34494 -33.66406 -31.93008 -31.78512 -30.76018 -30.44010 -27.48158 -26.53343 -24.72329 -23.55988 -23.46491 -23.00317 -21.69920 -20.96660 -19.03126 -18.70736 -18.45653 -18.20963 -17.98557 -17.57064 -17.18107 -16.88857 -16.42214 -15.99396 -15.77103 -15.72267 -15.13745 -15.05120 -14.89631 -14.73432 -14.39849 -14.21035 -13.83854 -13.74211 -13.57125 -13.36088 -13.22033 -13.12077 -13.00947 -12.82511 -12.66571 -12.40699 -12.18585 -12.14320 -11.86729 -11.83943 -11.67024 -11.59490 -11.39115 -10.99145 -10.62042 -9.99931 -9.80910 -9.74012 -8.30455 -6.47566 0.29930 0.51198 1.31676 1.40288 1.41407 1.41803 1.55708 1.67056 1.94586 2.39376 2.55647 2.89161 3.00641 3.25417 3.36870 3.54696 3.74945 3.86703 4.06406 4.11103 4.14080 4.17112 4.29462 4.37377 4.44182 4.49706 4.54354 4.65717 4.67372 4.72439 4.75675 4.82310 4.85167 5.03640 5.15691 5.16670 5.29926 5.47844 5.56104 5.62270 5.63403 5.65518 5.92211 6.08297 6.10032 6.30111 6.58961 6.90933 6.95901 7.25072 8.77233 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014265 B = 0.003320 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.340033 B = 8432.945855 C = 9520.852751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.219 3.781 3 H -0.001 1.001 4 C -0.547 4.547 5 H 0.070 0.930 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.983 3.017 9 H -0.260 1.260 10 H -0.279 1.279 11 H -0.271 1.271 12 O -0.360 6.360 13 C 0.443 3.557 14 O -0.547 6.547 15 C -0.108 4.108 16 C 0.234 3.766 17 H 0.076 0.924 18 C -0.112 4.112 19 C -0.106 4.106 20 C -0.119 4.119 21 C -0.117 4.117 22 C -0.126 4.126 23 C -0.120 4.120 24 N -0.608 5.608 25 C 0.051 3.949 26 C 0.038 3.962 27 O -0.350 6.350 28 C 0.644 3.356 29 O -0.578 6.578 30 H 0.076 0.924 31 H 0.023 0.977 32 H 0.050 0.950 33 H 0.270 0.730 34 H 0.143 0.857 35 H 0.146 0.854 36 H 0.144 0.856 37 H 0.153 0.847 38 H 0.147 0.853 39 H 0.138 0.862 40 H 0.114 0.886 41 H 0.137 0.863 42 H 0.090 0.910 43 H 0.148 0.852 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.406 -10.891 -22.955 25.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.166 3.834 3 H 0.017 0.983 4 C -0.584 4.584 5 H 0.088 0.912 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.806 3.194 9 H -0.184 1.184 10 H -0.205 1.205 11 H -0.196 1.196 12 O -0.277 6.277 13 C 0.287 3.713 14 O -0.438 6.438 15 C -0.146 4.146 16 C 0.133 3.867 17 H 0.094 0.906 18 C -0.113 4.113 19 C -0.124 4.124 20 C -0.137 4.137 21 C -0.134 4.134 22 C -0.144 4.144 23 C -0.139 4.139 24 N -0.354 5.354 25 C -0.071 4.071 26 C -0.035 4.035 27 O -0.261 6.261 28 C 0.399 3.601 29 O -0.467 6.467 30 H 0.095 0.905 31 H 0.042 0.958 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.161 0.839 35 H 0.163 0.837 36 H 0.162 0.838 37 H 0.170 0.830 38 H 0.165 0.835 39 H 0.156 0.844 40 H 0.132 0.868 41 H 0.154 0.846 42 H 0.108 0.892 43 H 0.166 0.834 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.530 -9.777 -22.796 24.810 hybrid contribution 0.218 0.621 1.392 1.540 sum 0.749 -9.157 -21.404 23.292 Atomic orbital electron populations 1.21934 0.96479 1.00510 1.00642 1.20289 0.92160 0.91696 0.79285 0.98271 1.21349 1.33298 1.13869 0.89925 0.91212 1.25856 0.94738 0.95649 1.02284 1.70039 1.36759 1.23732 1.25119 0.85133 0.78372 0.78432 0.77464 1.18422 1.20476 1.19581 1.86469 1.76262 1.43573 1.21358 1.24325 0.74343 0.85843 0.86770 1.90684 1.49465 1.18555 1.85050 1.21864 1.07054 0.98904 0.86755 1.19343 0.81097 0.94791 0.91511 0.90563 1.19865 0.95747 0.98730 0.96943 1.21298 1.00361 0.95189 0.95552 1.21506 0.95794 1.00176 0.96240 1.21575 0.95238 0.96502 1.00127 1.21386 1.00926 0.97193 0.94905 1.21212 0.95262 0.99780 0.97628 1.47931 1.09742 1.06658 1.71096 1.23283 0.82122 0.96318 1.05329 1.24736 0.93927 0.77553 1.07294 1.87212 1.19299 1.36029 1.83515 1.18568 0.82030 0.83657 0.75864 1.90946 1.47319 1.49050 1.59376 0.90546 0.95791 0.93050 0.92082 0.83892 0.83671 0.83807 0.82954 0.83541 0.84402 0.86791 0.84575 0.89218 0.83410 0.86720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.89 9.33 71.98 0.67 -6.22 16 2 C 0.22 11.86 2.56 29.85 0.08 11.94 16 3 H 0.00 -0.03 7.16 -2.38 -0.02 -0.05 16 4 C -0.55 -30.69 8.90 25.60 0.23 -30.46 16 5 H 0.07 3.81 7.81 -2.91 -0.02 3.78 16 6 C 0.01 0.78 5.30 84.65 0.45 1.23 16 7 N -0.92 -53.04 11.32 21.45 0.24 -52.79 16 8 Si 0.98 42.59 29.54 68.60 2.03 44.62 16 9 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 10 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 11 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 12 O -0.36 -16.39 9.86 -51.46 -0.51 -16.90 16 13 C 0.44 17.39 7.58 71.24 0.54 17.93 16 14 O -0.55 -26.26 14.57 21.97 0.32 -25.94 16 15 C -0.11 -2.68 4.69 29.85 0.14 -2.54 16 16 C 0.23 6.27 2.07 44.25 0.09 6.36 16 17 H 0.08 2.64 7.29 -2.39 -0.02 2.62 16 18 C -0.11 -2.33 4.96 -19.87 -0.10 -2.42 16 19 C -0.11 -1.54 8.82 22.27 0.20 -1.34 16 20 C -0.12 -1.41 10.05 22.27 0.22 -1.19 16 21 C -0.12 -1.50 10.05 22.27 0.22 -1.27 16 22 C -0.13 -2.07 10.05 22.27 0.22 -1.85 16 23 C -0.12 -2.56 9.67 22.27 0.22 -2.34 16 24 N -0.61 -16.74 1.86 -931.54 -1.73 -18.47 16 25 C 0.05 0.85 6.16 86.64 0.53 1.39 16 26 C 0.04 0.63 8.23 72.35 0.60 1.23 16 27 O -0.35 -10.74 11.09 -47.31 -0.52 -11.27 16 28 C 0.64 23.41 8.85 129.91 1.15 24.56 16 29 O -0.58 -26.64 17.42 19.63 0.34 -26.30 16 30 H 0.08 4.19 6.07 -2.39 -0.01 4.17 16 31 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 34 H 0.14 2.97 8.14 -2.39 -0.02 2.95 16 35 H 0.15 2.46 7.00 -2.38 -0.02 2.44 16 36 H 0.14 1.33 5.48 -2.91 -0.02 1.31 16 37 H 0.15 0.90 8.06 -2.91 -0.02 0.88 16 38 H 0.15 1.11 8.06 -2.91 -0.02 1.09 16 39 H 0.14 1.75 8.06 -2.91 -0.02 1.72 16 40 H 0.11 2.58 7.95 -2.91 -0.02 2.56 16 41 H 0.14 1.05 5.89 -2.39 -0.01 1.04 16 42 H 0.09 1.57 7.47 -2.39 -0.02 1.55 16 43 H 0.15 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -84.51 369.57 6.65 -77.86 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 1.02 Total: 14.18 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: 5.46 Total: 15.00 kcal Atomic # 7 Polarization: -69.78 SS G_CDS: -1.49 Total: -71.26 kcal Atomic # 8 Polarization: -80.03 SS G_CDS: -0.37 Total: -80.40 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -84.51 6.65 -77.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733710773.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.955 kcal (2) G-P(sol) polarization free energy of solvation -84.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds