Wall clock time and date at job start Tue Mar 31 2020 18:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47293 * 2 1 4 4 C 1.50702 * 109.47106 * 239.99834 * 2 1 3 5 5 H 1.08000 * 119.99913 * 240.00129 * 4 2 1 6 6 C 1.37881 * 119.99714 * 60.00148 * 4 2 1 7 7 N 1.31509 * 119.99954 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99720 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47045 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47253 * 300.00266 * 8 6 4 11 11 H 1.48504 * 109.47053 * 60.00031 * 8 6 4 12 12 O 1.45205 * 109.46841 * 120.00104 * 2 1 3 13 13 C 1.34234 * 116.99650 * 269.99417 * 12 2 1 14 14 O 1.20822 * 120.00290 * 0.02562 * 13 12 2 15 15 C 1.50705 * 119.99632 * 180.02562 * 13 12 2 16 16 C 1.52998 * 109.46870 * 180.02562 * 15 13 12 17 17 H 1.09001 * 109.47514 * 305.00299 * 16 15 13 18 18 C 1.50701 * 109.46991 * 184.99958 * 16 15 13 19 19 C 1.38231 * 119.99931 * 296.49113 * 18 16 15 20 20 C 1.38239 * 119.99887 * 179.78907 * 19 18 16 21 21 C 1.38238 * 119.99680 * 0.43698 * 20 19 18 22 22 C 1.38229 * 120.00153 * 359.81672 * 21 20 19 23 23 C 1.38231 * 120.00130 * 359.97438 * 22 21 20 24 24 N 1.46496 * 109.46878 * 65.00183 * 16 15 13 25 25 C 1.47097 * 125.56165 * 54.29068 * 24 16 15 26 26 C 1.54094 * 103.77698 * 179.97438 * 25 24 16 27 27 O 1.45706 * 104.00922 * 359.97438 * 26 25 24 28 28 C 1.33775 * 109.47246 * 359.75507 * 27 26 25 29 29 O 1.21510 * 123.06852 * 180.23887 * 28 27 26 30 30 H 1.08999 * 109.46650 * 300.00375 * 1 2 3 31 31 H 1.09004 * 109.46770 * 59.99579 * 1 2 3 32 32 H 1.08998 * 109.47293 * 179.97438 * 1 2 3 33 33 H 0.97003 * 119.99603 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.47199 * 300.00285 * 15 13 12 35 35 H 1.09003 * 109.47026 * 60.00326 * 15 13 12 36 36 H 1.08003 * 120.00183 * 359.97438 * 19 18 16 37 37 H 1.07997 * 120.00285 * 180.27842 * 20 19 18 38 38 H 1.08003 * 119.99638 * 179.83976 * 21 20 19 39 39 H 1.07999 * 120.00111 * 180.02562 * 22 21 20 40 40 H 1.08002 * 120.00254 * 180.02562 * 23 22 21 41 41 H 1.09000 * 110.56706 * 298.54999 * 25 24 16 42 42 H 1.09007 * 110.56193 * 61.40358 * 25 24 16 43 43 H 1.08996 * 110.51744 * 118.63361 * 26 25 24 44 44 H 1.09001 * 110.51980 * 241.23285 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 1.8269 -0.4199 -5.2205 10 1 3.8074 -1.1191 -4.0077 11 1 1.8280 -2.5198 -4.0081 12 8 2.0140 -0.6845 1.1856 13 6 2.2172 0.0640 2.2811 14 8 1.9975 1.2517 2.2506 15 6 2.7193 -0.5771 3.5492 16 6 2.8633 0.4890 4.6372 17 1 3.5023 1.2942 4.2747 18 6 3.4804 -0.1276 5.8660 19 6 2.8112 -1.1259 6.5488 20 6 3.3793 -1.6945 7.6735 21 6 4.6125 -1.2584 8.1206 22 6 5.2793 -0.2564 7.4408 23 6 4.7133 0.3092 6.3137 24 7 1.5423 1.0269 4.9716 25 6 0.3734 0.2325 5.3796 26 6 -0.7267 1.2877 5.6052 27 8 -0.0691 2.5527 5.3045 28 6 1.2037 2.3234 4.9624 29 8 1.9805 3.2095 4.6660 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 0.7090 1.1614 -3.4844 34 1 2.0105 -1.3373 3.8774 35 1 3.6884 -1.0401 3.3632 36 1 1.8458 -1.4638 6.2019 37 1 2.8585 -2.4776 8.2044 38 1 5.0551 -1.7008 9.0008 39 1 6.2430 0.0840 7.7899 40 1 5.2344 1.0918 5.7823 41 1 0.0846 -0.4584 4.5875 42 1 0.5811 -0.3076 6.3033 43 1 -1.5622 1.1198 4.9256 44 1 -1.0676 1.2689 6.6403 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733710775.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:22 Heat of formation + Delta-G solvation = -123.226305 kcal Electronic energy + Delta-G solvation = -29364.475133 eV Core-core repulsion = 25247.696633 eV Total energy + Delta-G solvation = -4116.778500 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.61814 -39.81001 -39.26203 -36.97830 -36.40905 -35.38288 -33.27784 -32.66857 -31.20555 -30.30520 -29.70595 -29.10985 -25.51303 -25.27100 -23.87161 -22.74157 -22.07644 -21.78361 -20.36232 -19.46763 -17.79054 -17.24979 -17.09145 -16.90781 -16.63521 -16.51770 -15.57702 -15.26408 -15.15210 -15.00835 -14.61723 -14.33896 -14.12797 -14.02648 -13.83934 -13.59439 -13.17419 -12.82599 -12.74664 -12.56179 -12.37160 -11.97376 -11.94036 -11.62341 -11.45207 -11.18955 -11.15477 -11.03882 -10.85542 -10.61081 -10.41062 -10.39884 -10.29306 -9.67643 -9.53841 -9.18202 -9.06975 -8.93003 -8.91422 -8.49741 -6.18668 -4.26197 0.99061 1.13749 2.47245 2.94847 3.01826 3.25624 3.28730 3.30874 3.42338 3.51366 3.65680 4.06131 4.28685 4.40041 4.43260 4.61493 4.70332 4.75612 4.86487 4.87397 5.05151 5.08969 5.14103 5.22636 5.28502 5.34456 5.42322 5.46255 5.67686 5.72845 5.81339 5.88555 6.17895 6.23819 6.26413 6.48649 6.61723 6.70786 6.84322 6.89452 7.15789 7.46192 7.58937 7.71339 7.93577 8.13219 8.23259 8.62562 8.87182 9.39359 10.88646 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014186 B = 0.003343 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.300772 B = 8373.940191 C = 9466.517654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.217 3.783 3 H 0.047 0.953 4 C -0.523 4.523 5 H 0.068 0.932 6 C 0.063 3.937 7 N -0.888 5.888 8 Si 0.912 3.088 9 H -0.285 1.285 10 H -0.274 1.274 11 H -0.274 1.274 12 O -0.358 6.358 13 C 0.445 3.555 14 O -0.504 6.504 15 C -0.126 4.126 16 C 0.231 3.769 17 H 0.119 0.881 18 C -0.098 4.098 19 C -0.110 4.110 20 C -0.121 4.121 21 C -0.117 4.117 22 C -0.118 4.118 23 C -0.098 4.098 24 N -0.616 5.616 25 C 0.054 3.946 26 C 0.044 3.956 27 O -0.330 6.330 28 C 0.655 3.345 29 O -0.510 6.510 30 H 0.013 0.987 31 H 0.099 0.901 32 H 0.035 0.965 33 H 0.267 0.733 34 H 0.103 0.897 35 H 0.118 0.882 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.127 0.873 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.105 0.895 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.384 -7.047 22.762 23.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.165 3.835 3 H 0.064 0.936 4 C -0.561 4.561 5 H 0.086 0.914 6 C -0.140 4.140 7 N -0.526 5.526 8 Si 0.739 3.261 9 H -0.210 1.210 10 H -0.200 1.200 11 H -0.200 1.200 12 O -0.275 6.275 13 C 0.287 3.713 14 O -0.392 6.392 15 C -0.165 4.165 16 C 0.129 3.871 17 H 0.137 0.863 18 C -0.099 4.099 19 C -0.128 4.128 20 C -0.139 4.139 21 C -0.135 4.135 22 C -0.136 4.136 23 C -0.117 4.117 24 N -0.363 5.363 25 C -0.069 4.069 26 C -0.031 4.031 27 O -0.240 6.240 28 C 0.409 3.591 29 O -0.393 6.393 30 H 0.032 0.968 31 H 0.117 0.883 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.121 0.879 35 H 0.136 0.864 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.145 0.855 41 H 0.109 0.891 42 H 0.112 0.888 43 H 0.123 0.877 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.490 -5.853 22.381 23.182 hybrid contribution 0.082 -0.615 -0.876 1.073 sum 1.572 -6.468 21.505 22.512 Atomic orbital electron populations 1.22140 0.97668 0.99866 1.01323 1.20610 0.91270 0.93944 0.77722 0.93567 1.20984 1.32665 1.13516 0.88933 0.91396 1.24894 0.94924 0.95077 0.99080 1.69892 1.35945 1.22448 1.24314 0.86329 0.79251 0.79483 0.81035 1.21020 1.19956 1.19952 1.86472 1.75960 1.43703 1.21366 1.23100 0.75829 0.86244 0.86133 1.90705 1.47639 1.16444 1.84455 1.21752 1.04976 0.98870 0.90914 1.19460 0.81516 0.96055 0.90087 0.86276 1.20050 0.95488 0.97235 0.97119 1.21161 0.99834 0.96122 0.95728 1.21135 0.95920 1.00014 0.96811 1.21200 0.95321 0.97204 0.99797 1.21163 1.00077 0.96847 0.95555 1.21134 0.94850 0.99325 0.96360 1.47791 1.11336 1.06057 1.71085 1.22954 0.85734 0.95922 1.02322 1.24200 0.95700 0.79656 1.03555 1.87281 1.23524 1.31562 1.81643 1.18251 0.81169 0.83341 0.76325 1.91024 1.49726 1.46761 1.51800 0.96759 0.88273 0.94556 0.92310 0.87904 0.86415 0.85715 0.85915 0.86073 0.85803 0.85458 0.89091 0.88811 0.87701 0.87884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.85 9.33 37.16 0.35 -3.51 16 2 C 0.22 5.84 2.56 -27.88 -0.07 5.77 16 3 H 0.05 1.40 7.16 -51.93 -0.37 1.03 16 4 C -0.52 -14.72 8.90 -34.44 -0.31 -15.03 16 5 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.53 11.32 55.43 0.63 -24.90 16 8 Si 0.91 21.14 29.54 -169.99 -5.02 16.12 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 12 O -0.36 -8.33 9.86 -39.27 -0.39 -8.72 16 13 C 0.45 8.92 7.79 36.01 0.28 9.20 16 14 O -0.50 -11.89 13.98 -18.75 -0.26 -12.15 16 15 C -0.13 -1.70 5.00 -27.88 -0.14 -1.84 16 16 C 0.23 3.05 2.14 -69.08 -0.15 2.91 16 17 H 0.12 1.88 7.10 -51.93 -0.37 1.51 16 18 C -0.10 -1.03 4.97 -104.62 -0.52 -1.55 16 19 C -0.11 -0.94 8.14 -39.58 -0.32 -1.27 16 20 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 21 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 22 C -0.12 -1.00 10.05 -39.59 -0.40 -1.40 16 23 C -0.10 -0.99 9.67 -39.58 -0.38 -1.37 16 24 N -0.62 -8.52 2.08 -172.55 -0.36 -8.88 16 25 C 0.05 0.50 5.97 -3.15 -0.02 0.48 16 26 C 0.04 0.40 8.23 37.73 0.31 0.71 16 27 O -0.33 -5.09 11.09 -37.84 -0.42 -5.51 16 28 C 0.66 11.64 8.13 53.71 0.44 12.07 16 29 O -0.51 -11.23 17.32 -19.12 -0.33 -11.56 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.10 2.71 6.07 -51.93 -0.32 2.39 16 32 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 34 H 0.10 1.11 6.98 -51.93 -0.36 0.74 16 35 H 0.12 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.13 0.85 5.43 -52.48 -0.29 0.57 16 37 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 38 H 0.12 0.67 8.06 -52.48 -0.42 0.24 16 39 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.13 1.23 7.95 -52.49 -0.42 0.81 16 41 H 0.09 0.79 7.64 -51.93 -0.40 0.39 16 42 H 0.09 0.59 5.71 -51.93 -0.30 0.29 16 43 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 367.81 15.07 5.54 5.54 Total: -1.00 -36.63 367.81 -8.17 -44.80 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -5.74 Total: 1.04 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -1.82 Total: 4.22 kcal Atomic # 7 Polarization: -34.05 SS G_CDS: 0.27 Total: -33.78 kcal Atomic # 8 Polarization: -36.54 SS G_CDS: -1.40 Total: -37.94 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.63 -8.17 -44.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733710775.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.422 kcal (2) G-P(sol) polarization free energy of solvation -36.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds