Wall clock time and date at job start Tue Mar 31 2020 18:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47293 * 2 1 4 4 C 1.50702 * 109.47106 * 239.99834 * 2 1 3 5 5 H 1.08000 * 119.99913 * 240.00129 * 4 2 1 6 6 C 1.37881 * 119.99714 * 60.00148 * 4 2 1 7 7 N 1.31509 * 119.99954 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99720 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47045 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47253 * 300.00266 * 8 6 4 11 11 H 1.48504 * 109.47053 * 60.00031 * 8 6 4 12 12 O 1.45205 * 109.46841 * 120.00104 * 2 1 3 13 13 C 1.34234 * 116.99650 * 269.99417 * 12 2 1 14 14 O 1.20822 * 120.00290 * 0.02562 * 13 12 2 15 15 C 1.50705 * 119.99632 * 180.02562 * 13 12 2 16 16 C 1.52998 * 109.46870 * 180.02562 * 15 13 12 17 17 H 1.09001 * 109.47514 * 305.00299 * 16 15 13 18 18 C 1.50701 * 109.46991 * 184.99958 * 16 15 13 19 19 C 1.38231 * 119.99931 * 296.49113 * 18 16 15 20 20 C 1.38239 * 119.99887 * 179.78907 * 19 18 16 21 21 C 1.38238 * 119.99680 * 0.43698 * 20 19 18 22 22 C 1.38229 * 120.00153 * 359.81672 * 21 20 19 23 23 C 1.38231 * 120.00130 * 359.97438 * 22 21 20 24 24 N 1.46496 * 109.46878 * 65.00183 * 16 15 13 25 25 C 1.47097 * 125.56165 * 54.29068 * 24 16 15 26 26 C 1.54094 * 103.77698 * 179.97438 * 25 24 16 27 27 O 1.45706 * 104.00922 * 359.97438 * 26 25 24 28 28 C 1.33775 * 109.47246 * 359.75507 * 27 26 25 29 29 O 1.21510 * 123.06852 * 180.23887 * 28 27 26 30 30 H 1.08999 * 109.46650 * 300.00375 * 1 2 3 31 31 H 1.09004 * 109.46770 * 59.99579 * 1 2 3 32 32 H 1.08998 * 109.47293 * 179.97438 * 1 2 3 33 33 H 0.97003 * 119.99603 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.47199 * 300.00285 * 15 13 12 35 35 H 1.09003 * 109.47026 * 60.00326 * 15 13 12 36 36 H 1.08003 * 120.00183 * 359.97438 * 19 18 16 37 37 H 1.07997 * 120.00285 * 180.27842 * 20 19 18 38 38 H 1.08003 * 119.99638 * 179.83976 * 21 20 19 39 39 H 1.07999 * 120.00111 * 180.02562 * 22 21 20 40 40 H 1.08002 * 120.00254 * 180.02562 * 23 22 21 41 41 H 1.09000 * 110.56706 * 298.54999 * 25 24 16 42 42 H 1.09007 * 110.56193 * 61.40358 * 25 24 16 43 43 H 1.08996 * 110.51744 * 118.63361 * 26 25 24 44 44 H 1.09001 * 110.51980 * 241.23285 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 1.8269 -0.4199 -5.2205 10 1 3.8074 -1.1191 -4.0077 11 1 1.8280 -2.5198 -4.0081 12 8 2.0140 -0.6845 1.1856 13 6 2.2172 0.0640 2.2811 14 8 1.9975 1.2517 2.2506 15 6 2.7193 -0.5771 3.5492 16 6 2.8633 0.4890 4.6372 17 1 3.5023 1.2942 4.2747 18 6 3.4804 -0.1276 5.8660 19 6 2.8112 -1.1259 6.5488 20 6 3.3793 -1.6945 7.6735 21 6 4.6125 -1.2584 8.1206 22 6 5.2793 -0.2564 7.4408 23 6 4.7133 0.3092 6.3137 24 7 1.5423 1.0269 4.9716 25 6 0.3734 0.2325 5.3796 26 6 -0.7267 1.2877 5.6052 27 8 -0.0691 2.5527 5.3045 28 6 1.2037 2.3234 4.9624 29 8 1.9805 3.2095 4.6660 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 0.7090 1.1614 -3.4844 34 1 2.0105 -1.3373 3.8774 35 1 3.6884 -1.0401 3.3632 36 1 1.8458 -1.4638 6.2019 37 1 2.8585 -2.4776 8.2044 38 1 5.0551 -1.7008 9.0008 39 1 6.2430 0.0840 7.7899 40 1 5.2344 1.0918 5.7823 41 1 0.0846 -0.4584 4.5875 42 1 0.5811 -0.3076 6.3033 43 1 -1.5622 1.1198 4.9256 44 1 -1.0676 1.2689 6.6403 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733710775.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:21 Heat of formation + Delta-G solvation = -145.869646 kcal Electronic energy + Delta-G solvation = -29365.457022 eV Core-core repulsion = 25247.696633 eV Total energy + Delta-G solvation = -4117.760389 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.72335 -41.30201 -40.23410 -38.30675 -37.87056 -36.84480 -35.34593 -33.65397 -31.93226 -31.79625 -30.82519 -30.33544 -27.48831 -26.51771 -24.77766 -23.57104 -23.44558 -22.91844 -21.70606 -20.96092 -18.99288 -18.69935 -18.41891 -18.18592 -18.00226 -17.57166 -17.16100 -16.86313 -16.41843 -16.01182 -15.77339 -15.61085 -15.12320 -15.04275 -14.88543 -14.78111 -14.37439 -14.21826 -13.82734 -13.76645 -13.53226 -13.35282 -13.16073 -13.11225 -12.99652 -12.82839 -12.65640 -12.40411 -12.19295 -12.13607 -11.85433 -11.79853 -11.64579 -11.59405 -11.35991 -11.01143 -10.61440 -9.97054 -9.79432 -9.75683 -8.30265 -6.48089 0.29846 0.51217 1.33976 1.40676 1.42659 1.44751 1.52919 1.72435 1.96193 2.39599 2.58775 2.90452 3.00434 3.28785 3.38740 3.55399 3.76752 3.90640 4.07948 4.12113 4.16973 4.18995 4.30179 4.37714 4.45323 4.50146 4.53645 4.65237 4.68531 4.72478 4.74178 4.81572 4.88321 5.03610 5.15611 5.16612 5.32613 5.46720 5.56403 5.61127 5.64078 5.65786 5.91677 6.08891 6.10319 6.33689 6.58349 6.95454 6.98117 7.24712 8.77165 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014186 B = 0.003343 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.300772 B = 8373.940191 C = 9466.517654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.220 3.780 3 H -0.002 1.002 4 C -0.549 4.549 5 H 0.070 0.930 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.984 3.016 9 H -0.279 1.279 10 H -0.269 1.269 11 H -0.259 1.259 12 O -0.362 6.362 13 C 0.439 3.561 14 O -0.544 6.544 15 C -0.110 4.110 16 C 0.234 3.766 17 H 0.078 0.922 18 C -0.109 4.109 19 C -0.109 4.109 20 C -0.117 4.117 21 C -0.116 4.116 22 C -0.125 4.125 23 C -0.120 4.120 24 N -0.611 5.611 25 C 0.048 3.952 26 C 0.035 3.965 27 O -0.354 6.354 28 C 0.644 3.356 29 O -0.575 6.575 30 H 0.020 0.980 31 H 0.076 0.924 32 H 0.050 0.950 33 H 0.270 0.730 34 H 0.144 0.856 35 H 0.141 0.859 36 H 0.147 0.853 37 H 0.154 0.846 38 H 0.147 0.853 39 H 0.138 0.862 40 H 0.114 0.886 41 H 0.102 0.898 42 H 0.134 0.866 43 H 0.117 0.883 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.938 -10.978 24.748 27.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.167 3.833 3 H 0.015 0.985 4 C -0.587 4.587 5 H 0.089 0.911 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.807 3.193 9 H -0.204 1.204 10 H -0.194 1.194 11 H -0.184 1.184 12 O -0.278 6.278 13 C 0.284 3.716 14 O -0.435 6.435 15 C -0.148 4.148 16 C 0.132 3.868 17 H 0.097 0.903 18 C -0.110 4.110 19 C -0.127 4.127 20 C -0.135 4.135 21 C -0.134 4.134 22 C -0.143 4.143 23 C -0.139 4.139 24 N -0.358 5.358 25 C -0.073 4.073 26 C -0.038 4.038 27 O -0.264 6.264 28 C 0.399 3.601 29 O -0.463 6.463 30 H 0.039 0.961 31 H 0.095 0.905 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.161 0.839 35 H 0.159 0.841 36 H 0.165 0.835 37 H 0.171 0.829 38 H 0.164 0.836 39 H 0.156 0.844 40 H 0.132 0.868 41 H 0.120 0.880 42 H 0.152 0.848 43 H 0.135 0.865 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.016 -9.842 24.409 26.338 hybrid contribution 0.204 0.615 -1.367 1.513 sum 1.221 -9.228 23.042 24.851 Atomic orbital electron populations 1.21927 0.96634 1.00425 1.00490 1.20258 0.92049 0.91647 0.79374 0.98461 1.21298 1.33497 1.13966 0.89919 0.91140 1.25886 0.94698 0.95634 1.02348 1.70033 1.36681 1.23736 1.25266 0.85213 0.78759 0.78747 0.76579 1.20433 1.19363 1.18385 1.86461 1.76350 1.43613 1.21402 1.24420 0.74454 0.85927 0.86831 1.90713 1.49261 1.18495 1.85003 1.21908 1.06773 0.99168 0.86915 1.19341 0.81110 0.94817 0.91559 0.90336 1.19769 0.95931 0.98701 0.96597 1.21372 1.00479 0.95144 0.95720 1.21512 0.95748 1.00058 0.96172 1.21585 0.95367 0.96295 1.00136 1.21379 1.00844 0.97125 0.94953 1.21206 0.95342 0.99849 0.97494 1.47924 1.12688 1.05364 1.69794 1.23385 0.83730 0.95692 1.04479 1.24757 0.95515 0.77060 1.06463 1.87219 1.22694 1.35084 1.81405 1.18577 0.81452 0.84056 0.76039 1.90950 1.51759 1.48860 1.54739 0.96124 0.90517 0.93055 0.92053 0.83866 0.84076 0.83503 0.82859 0.83553 0.84428 0.86809 0.87966 0.84803 0.86452 0.83772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.08 9.33 71.98 0.67 -6.41 16 2 C 0.22 12.26 2.56 29.85 0.08 12.34 16 3 H 0.00 -0.16 7.16 -2.39 -0.02 -0.17 16 4 C -0.55 -31.41 8.90 25.60 0.23 -31.18 16 5 H 0.07 3.89 7.81 -2.91 -0.02 3.86 16 6 C 0.01 0.78 5.30 84.66 0.45 1.22 16 7 N -0.92 -54.07 11.32 21.45 0.24 -53.83 16 8 Si 0.98 43.13 29.54 68.60 2.03 45.15 16 9 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 10 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 11 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 12 O -0.36 -17.01 9.86 -51.45 -0.51 -17.51 16 13 C 0.44 17.96 7.79 71.24 0.56 18.52 16 14 O -0.54 -27.24 13.98 21.98 0.31 -26.93 16 15 C -0.11 -2.81 5.00 29.85 0.15 -2.66 16 16 C 0.23 6.24 2.14 44.25 0.09 6.33 16 17 H 0.08 2.73 7.10 -2.39 -0.02 2.72 16 18 C -0.11 -2.15 4.97 -19.87 -0.10 -2.25 16 19 C -0.11 -1.44 8.14 22.27 0.18 -1.26 16 20 C -0.12 -1.22 10.05 22.27 0.22 -1.00 16 21 C -0.12 -1.34 10.05 22.27 0.22 -1.12 16 22 C -0.13 -1.90 10.05 22.27 0.22 -1.68 16 23 C -0.12 -2.42 9.67 22.27 0.22 -2.20 16 24 N -0.61 -16.81 2.08 -931.53 -1.94 -18.75 16 25 C 0.05 0.75 5.97 86.64 0.52 1.27 16 26 C 0.04 0.57 8.23 72.35 0.60 1.16 16 27 O -0.35 -11.15 11.09 -47.35 -0.53 -11.67 16 28 C 0.64 24.08 8.13 129.91 1.06 25.13 16 29 O -0.58 -27.65 17.32 19.65 0.34 -27.31 16 30 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.08 4.32 6.07 -2.38 -0.01 4.30 16 32 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 34 H 0.14 2.53 6.98 -2.39 -0.02 2.51 16 35 H 0.14 3.03 8.14 -2.39 -0.02 3.01 16 36 H 0.15 1.19 5.43 -2.91 -0.02 1.17 16 37 H 0.15 0.70 8.06 -2.91 -0.02 0.68 16 38 H 0.15 0.95 8.06 -2.91 -0.02 0.92 16 39 H 0.14 1.60 8.06 -2.91 -0.02 1.57 16 40 H 0.11 2.45 7.95 -2.91 -0.02 2.43 16 41 H 0.10 1.40 7.64 -2.39 -0.02 1.38 16 42 H 0.13 1.01 5.71 -2.38 -0.01 1.00 16 43 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.14 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -87.38 367.81 6.33 -81.05 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 1.02 Total: 13.57 kcal Atomic # 6 Polarization: 10.87 SS G_CDS: 5.36 Total: 16.23 kcal Atomic # 7 Polarization: -70.89 SS G_CDS: -1.70 Total: -72.58 kcal Atomic # 8 Polarization: -83.04 SS G_CDS: -0.39 Total: -83.42 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Total: -87.38 6.33 -81.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733710775.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.819 kcal (2) G-P(sol) polarization free energy of solvation -87.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds