Wall clock time and date at job start Tue Mar 31 2020 18:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08990 * 109.47744 * 2 1 4 4 C 1.50700 * 109.46980 * 120.00247 * 2 1 3 5 5 H 1.08004 * 119.99987 * 119.99840 * 4 2 1 6 6 C 1.37875 * 120.00047 * 299.99666 * 4 2 1 7 7 N 1.31511 * 119.99884 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00324 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47209 * 59.99788 * 8 6 4 10 10 H 1.48494 * 109.47022 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46882 * 299.99701 * 8 6 4 12 12 O 1.45201 * 109.46827 * 239.99714 * 2 1 3 13 13 C 1.34225 * 116.99853 * 90.00634 * 12 2 1 14 14 O 1.20828 * 120.00406 * 359.97438 * 13 12 2 15 15 C 1.50701 * 120.00030 * 179.97438 * 13 12 2 16 16 O 1.42902 * 109.47188 * 179.97438 * 15 13 12 17 17 C 1.35969 * 116.99777 * 179.97438 * 16 15 13 18 18 C 1.38722 * 119.98897 * 359.72589 * 17 16 15 19 19 C 1.38094 * 120.01373 * 179.71977 * 18 17 16 20 20 C 1.38849 * 119.98430 * 0.58114 * 19 18 17 21 21 N 1.40104 * 120.01098 * 179.67692 * 20 19 18 22 22 C 1.46769 * 124.34818 * 174.23022 * 21 20 19 23 23 C 1.54480 * 105.47112 * 197.01739 * 22 21 20 24 24 C 1.54622 * 101.76461 * 334.58160 * 23 22 21 25 25 C 1.34421 * 124.35443 * 353.93066 * 21 20 19 26 26 O 1.21296 * 124.93882 * 359.57453 * 25 21 20 27 27 C 1.38844 * 119.97120 * 359.69318 * 20 19 18 28 28 C 1.38093 * 119.98425 * 0.02562 * 27 20 19 29 29 H 1.08994 * 109.47325 * 59.99790 * 1 2 3 30 30 H 1.08998 * 109.47042 * 299.99900 * 1 2 3 31 31 H 1.08998 * 109.47146 * 180.02562 * 1 2 3 32 32 H 0.97005 * 120.00529 * 180.02562 * 7 6 4 33 33 H 1.08996 * 109.47287 * 299.99906 * 15 13 12 34 34 H 1.09004 * 109.47149 * 59.99757 * 15 13 12 35 35 H 1.07996 * 119.98974 * 359.97438 * 18 17 16 36 36 H 1.08004 * 120.00301 * 180.27271 * 19 18 17 37 37 H 1.09005 * 110.24320 * 316.01795 * 22 21 20 38 38 H 1.08995 * 110.24368 * 77.92456 * 22 21 20 39 39 H 1.08997 * 110.96956 * 92.70348 * 23 22 21 40 40 H 1.08998 * 110.96174 * 216.46339 * 23 22 21 41 41 H 1.09000 * 110.48420 * 143.47918 * 24 23 22 42 42 H 1.09000 * 110.48388 * 265.98706 * 24 23 22 43 43 H 1.07993 * 120.00924 * 180.02562 * 27 20 19 44 44 H 1.07999 * 119.98903 * 180.02562 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.8074 -1.1192 4.0078 10 1 1.8279 -0.4193 5.2204 11 1 1.8278 -2.5198 4.0082 12 8 2.0139 -0.6846 -1.1855 13 6 2.2171 0.0639 -2.2811 14 8 1.9975 1.2517 -2.2506 15 6 2.7193 -0.5772 -3.5491 16 8 2.8538 0.4185 -4.5653 17 6 3.3002 0.0035 -5.7808 18 6 3.6074 -1.3334 -5.9872 19 6 4.0553 -1.7564 -7.2231 20 6 4.2098 -0.8411 -8.2557 21 7 4.6707 -1.2685 -9.5078 22 6 4.7540 -0.4114 -10.6963 23 6 4.8836 -1.3787 -11.8938 24 6 5.5082 -2.6255 -11.2257 25 6 5.0987 -2.5147 -9.7737 26 8 5.1470 -3.4195 -8.9672 27 6 3.9076 0.4978 -8.0468 28 6 3.4542 0.9185 -6.8121 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 0.7088 1.1613 3.4844 33 1 3.6883 -1.0402 -3.3631 34 1 2.0104 -1.3374 -3.8773 35 1 3.4922 -2.0442 -5.1823 36 1 4.2902 -2.7981 -7.3848 37 1 3.8494 0.1890 -10.7925 38 1 5.6299 0.2344 -10.6348 39 1 3.9056 -1.6107 -12.3154 40 1 5.5479 -0.9700 -12.6551 41 1 5.1077 -3.5370 -11.6695 42 1 6.5942 -2.6033 -11.3168 43 1 4.0271 1.2101 -8.8496 44 1 3.2187 1.9599 -6.6496 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733711540.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:00 Heat of formation + Delta-G solvation = -141.752395 kcal Electronic energy + Delta-G solvation = -27211.463843 eV Core-core repulsion = 23093.881991 eV Total energy + Delta-G solvation = -4117.581852 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.11580 -41.58242 -40.65473 -38.56839 -37.66665 -37.38517 -35.38493 -33.72213 -32.24580 -31.92026 -30.36430 -28.84142 -28.60475 -27.47780 -24.62817 -24.08942 -23.52231 -22.24060 -21.41681 -20.82589 -19.57588 -18.95658 -18.60777 -18.24116 -17.79440 -17.70424 -17.51544 -16.92996 -16.39318 -16.20994 -15.76266 -15.55763 -15.02266 -14.92695 -14.78796 -14.56186 -14.48377 -14.33080 -14.20856 -13.96666 -13.58722 -13.54770 -13.21746 -13.15376 -13.02496 -12.83400 -12.47201 -12.40959 -12.31722 -12.20826 -12.16267 -11.83821 -11.66817 -11.42776 -11.05174 -10.76718 -10.70878 -10.61900 -10.10795 -8.64865 -8.30612 -6.48128 0.17860 0.25754 1.14239 1.22087 1.43250 1.45878 1.50819 1.54982 1.81947 2.33800 2.63760 2.72478 3.00189 3.29269 3.57222 3.62207 3.81367 3.89487 3.95742 3.97526 4.02971 4.10845 4.16634 4.35097 4.48368 4.51304 4.59516 4.63958 4.75126 4.78087 4.83402 4.86467 5.01006 5.08688 5.10283 5.14036 5.20823 5.30201 5.40620 5.45106 5.57870 5.79233 5.86056 6.00327 6.07293 6.25504 6.56032 6.83694 6.97766 7.22991 8.77002 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.030339 B = 0.001839 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.673662 B =15218.191695 C =15850.016314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.217 3.783 3 H 0.009 0.991 4 C -0.550 4.550 5 H 0.071 0.929 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.986 3.014 9 H -0.268 1.268 10 H -0.277 1.277 11 H -0.263 1.263 12 O -0.354 6.354 13 C 0.450 3.550 14 O -0.539 6.539 15 C 0.078 3.922 16 O -0.317 6.317 17 C 0.088 3.912 18 C -0.182 4.182 19 C -0.133 4.133 20 C 0.118 3.882 21 N -0.560 5.560 22 C 0.083 3.917 23 C -0.118 4.118 24 C -0.146 4.146 25 C 0.495 3.505 26 O -0.564 6.564 27 C -0.103 4.103 28 C -0.126 4.126 29 H 0.023 0.977 30 H 0.083 0.917 31 H 0.049 0.951 32 H 0.272 0.728 33 H 0.129 0.871 34 H 0.132 0.868 35 H 0.146 0.854 36 H 0.143 0.857 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.126 0.874 41 H 0.114 0.886 42 H 0.124 0.876 43 H 0.169 0.831 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.765 -3.807 -33.112 34.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.164 3.836 3 H 0.027 0.973 4 C -0.587 4.587 5 H 0.089 0.911 6 C -0.184 4.184 7 N -0.554 5.554 8 Si 0.808 3.192 9 H -0.193 1.193 10 H -0.202 1.202 11 H -0.187 1.187 12 O -0.271 6.271 13 C 0.293 3.707 14 O -0.429 6.429 15 C 0.003 3.997 16 O -0.232 6.232 17 C 0.043 3.957 18 C -0.201 4.201 19 C -0.153 4.153 20 C 0.024 3.976 21 N -0.283 5.283 22 C -0.037 4.037 23 C -0.155 4.155 24 C -0.186 4.186 25 C 0.287 3.713 26 O -0.443 6.443 27 C -0.123 4.123 28 C -0.145 4.145 29 H 0.043 0.957 30 H 0.101 0.899 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.146 0.854 34 H 0.149 0.851 35 H 0.164 0.836 36 H 0.161 0.839 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.111 0.889 40 H 0.144 0.856 41 H 0.132 0.868 42 H 0.142 0.858 43 H 0.186 0.814 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 8.565 -3.604 -32.465 33.769 hybrid contribution -0.042 -0.181 1.446 1.458 sum 8.523 -3.785 -31.019 32.391 Atomic orbital electron populations 1.22002 0.96481 1.00673 1.00965 1.20457 0.92246 0.92221 0.78676 0.97320 1.21261 1.33692 1.14088 0.89699 0.91103 1.25863 0.94680 0.95680 1.02208 1.70011 1.36412 1.23601 1.25393 0.85191 0.78754 0.78609 0.76596 1.19339 1.20230 1.18740 1.86439 1.76273 1.43347 1.21032 1.23697 0.74676 0.85769 0.86523 1.90621 1.48960 1.18445 1.84910 1.22022 1.05232 0.89893 0.82591 1.86066 1.81929 1.36182 1.18984 1.19259 0.97899 0.93719 0.84781 1.21338 1.04870 0.94675 0.99220 1.21402 1.00576 1.01271 0.92054 1.17872 1.00624 0.93739 0.85372 1.46067 1.59995 1.12770 1.09487 1.22680 1.05061 0.93962 0.82040 1.22676 1.03740 0.92592 0.96514 1.22402 1.04693 1.02567 0.88903 1.22108 0.75573 0.80985 0.92651 1.90618 1.55568 1.43216 1.54898 1.20810 1.00637 0.93440 0.97386 1.20506 1.02996 1.00022 0.90949 0.95746 0.89881 0.93189 0.91900 0.85380 0.85057 0.83646 0.83931 0.88003 0.88332 0.88922 0.85551 0.86773 0.85777 0.81365 0.83585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.49 9.33 71.98 0.67 -6.82 16 2 C 0.22 12.11 2.56 29.85 0.08 12.18 16 3 H 0.01 0.56 7.16 -2.39 -0.02 0.55 16 4 C -0.55 -31.36 8.90 25.60 0.23 -31.14 16 5 H 0.07 3.91 7.81 -2.91 -0.02 3.89 16 6 C 0.02 0.86 5.30 84.65 0.45 1.31 16 7 N -0.92 -52.98 11.32 21.45 0.24 -52.74 16 8 Si 0.99 43.00 29.54 68.60 2.03 45.03 16 9 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 10 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 11 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 12 O -0.35 -17.13 9.86 -51.37 -0.51 -17.64 16 13 C 0.45 19.56 8.01 71.24 0.57 20.13 16 14 O -0.54 -27.67 15.72 28.39 0.45 -27.23 16 15 C 0.08 2.39 5.33 71.24 0.38 2.77 16 16 O -0.32 -10.37 9.67 -74.12 -0.72 -11.08 16 17 C 0.09 2.38 6.69 22.50 0.15 2.53 16 18 C -0.18 -4.51 9.03 22.35 0.20 -4.30 16 19 C -0.13 -3.32 9.28 22.38 0.21 -3.11 16 20 C 0.12 2.40 6.60 38.11 0.25 2.65 16 21 N -0.56 -8.50 3.14 -627.54 -1.97 -10.47 16 22 C 0.08 0.37 6.27 86.83 0.54 0.91 16 23 C -0.12 -0.04 7.18 31.65 0.23 0.19 16 24 C -0.15 -0.91 6.86 30.58 0.21 -0.70 16 25 C 0.50 8.84 7.92 87.90 0.70 9.54 16 26 O -0.56 -15.41 14.82 -3.08 -0.05 -15.46 16 27 C -0.10 -1.74 9.40 22.38 0.21 -1.53 16 28 C -0.13 -2.78 9.98 22.35 0.22 -2.55 16 29 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.08 4.64 6.07 -2.39 -0.01 4.62 16 31 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.27 14.69 8.31 -92.70 -0.77 13.92 16 33 H 0.13 3.22 7.64 -2.39 -0.02 3.20 16 34 H 0.13 3.19 7.67 -2.39 -0.02 3.17 16 35 H 0.15 3.13 6.29 -2.91 -0.02 3.11 16 36 H 0.14 4.00 5.26 -2.91 -0.02 3.98 16 37 H 0.10 0.20 7.70 -2.38 -0.02 0.18 16 38 H 0.10 0.14 8.14 -2.39 -0.02 0.12 16 39 H 0.09 -0.04 8.14 -2.39 -0.02 -0.06 16 40 H 0.13 -0.63 8.14 -2.39 -0.02 -0.65 16 41 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.17 1.52 7.01 -2.91 -0.02 1.50 16 44 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -80.30 369.99 5.80 -74.50 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 1.03 Total: 13.03 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: 5.30 Total: 2.06 kcal Atomic # 7 Polarization: -61.48 SS G_CDS: -1.73 Total: -63.21 kcal Atomic # 8 Polarization: -70.58 SS G_CDS: -0.82 Total: -71.41 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -80.30 5.80 -74.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733711540.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.251 kcal (2) G-P(sol) polarization free energy of solvation -80.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds