Wall clock time and date at job start Tue Mar 31 2020 18:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47001 * 2 1 4 4 C 1.53009 * 109.47081 * 240.00087 * 2 1 3 5 5 N 1.46499 * 109.47151 * 35.01951 * 4 2 1 6 6 C 1.34778 * 119.99776 * 251.57113 * 5 4 2 7 7 O 1.21593 * 119.99799 * 184.28594 * 6 5 4 8 8 C 1.47531 * 119.99951 * 4.28501 * 6 5 4 9 9 C 1.39667 * 120.19852 * 20.71589 * 8 6 5 10 10 C 1.37832 * 119.91817 * 179.71938 * 9 8 6 11 11 C 1.38573 * 120.32107 * 0.57786 * 10 9 8 12 12 C 1.38030 * 120.40372 * 359.69927 * 11 10 9 13 13 C 1.38827 * 120.07100 * 359.97438 * 12 11 10 14 14 O 1.35516 * 120.16276 * 180.02562 * 13 12 11 15 15 C 1.34814 * 116.99921 * 4.54770 * 14 13 12 16 16 H 1.07998 * 119.99836 * 4.05264 * 15 14 13 17 17 C 1.38697 * 120.00260 * 184.05003 * 15 14 13 18 18 N 1.31518 * 120.00087 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00230 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46781 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47232 * 119.99397 * 19 17 15 22 22 H 1.48497 * 109.47034 * 239.99771 * 19 17 15 23 23 C 1.46503 * 120.00061 * 71.57175 * 5 4 2 24 24 C 1.52993 * 117.49824 * 198.93221 * 23 5 4 25 25 C 1.52997 * 117.49742 * 130.27268 * 23 5 4 26 26 C 1.50701 * 109.47105 * 120.00111 * 2 1 3 27 27 O 1.20822 * 120.00165 * 119.99893 * 26 2 1 28 28 O 1.34222 * 119.99920 * 300.27965 * 26 2 1 29 29 H 1.09010 * 109.47130 * 52.31185 * 1 2 3 30 30 H 1.09003 * 109.47001 * 172.30397 * 1 2 3 31 31 H 1.08994 * 109.47255 * 292.30582 * 1 2 3 32 32 H 1.08999 * 109.46917 * 155.01729 * 4 2 1 33 33 H 1.08996 * 109.46756 * 275.02117 * 4 2 1 34 34 H 1.07996 * 120.03926 * 0.02562 * 9 8 6 35 35 H 1.07995 * 119.83540 * 180.31799 * 10 9 8 36 36 H 1.08005 * 119.79581 * 179.71618 * 11 10 9 37 37 H 1.07997 * 119.95869 * 180.02562 * 12 11 10 38 38 H 0.96998 * 120.00212 * 180.02562 * 18 17 15 39 39 H 1.09001 * 115.54738 * 344.60004 * 23 5 4 40 40 H 1.08999 * 117.50355 * 0.02562 * 24 23 5 41 41 H 1.09006 * 117.50315 * 145.01988 * 24 23 5 42 42 H 1.09002 * 117.49575 * 214.97908 * 25 23 5 43 43 H 1.08994 * 117.50233 * 359.97438 * 25 23 5 44 44 H 0.96703 * 117.00081 * 179.72748 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 1.1363 -0.4536 -2.3709 6 6 0.3325 -1.4301 -2.8364 7 8 -0.3603 -1.2319 -3.8158 8 6 0.2932 -2.7394 -2.1578 9 6 0.7193 -2.8570 -0.8329 10 6 0.6747 -4.0820 -0.2026 11 6 0.2200 -5.2016 -0.8808 12 6 -0.1989 -5.1017 -2.1922 13 6 -0.1673 -3.8747 -2.8410 14 8 -0.5786 -3.7744 -4.1283 15 6 -1.0957 -4.8835 -4.6938 16 1 -1.2276 -5.7788 -4.1044 17 6 -1.4583 -4.8749 -6.0326 18 7 -1.2982 -3.7845 -6.7502 19 14 -2.1754 -6.4116 -6.8160 20 1 -2.2526 -7.4941 -5.8022 21 1 -3.5370 -6.1160 -7.3297 22 1 -1.3063 -6.8465 -7.9387 23 6 1.1065 0.8756 -2.9864 24 6 -0.1213 1.2387 -3.8239 25 6 1.2162 0.9509 -4.5105 26 6 2.0323 -0.7104 1.2305 27 8 2.7269 -1.6928 1.1196 28 8 1.7034 -0.2552 2.4495 29 1 -0.3634 0.6283 -0.8133 30 1 -0.3633 -1.0184 -0.1376 31 1 -0.3633 0.3900 0.9507 32 1 3.0394 -0.3614 -1.4941 33 1 2.0763 -1.7941 -1.0601 34 1 1.0786 -1.9883 -0.3014 35 1 0.9996 -4.1704 0.8235 36 1 0.1929 -6.1582 -0.3801 37 1 -0.5523 -5.9788 -2.7138 38 1 -1.5521 -3.7783 -7.6863 39 1 1.5747 1.6721 -2.4080 40 1 -0.9070 0.4890 -3.9167 41 1 -0.4606 2.2743 -3.7970 42 1 1.7563 1.7971 -4.9350 43 1 1.3110 0.0116 -5.0553 44 1 2.0460 -0.7464 3.2088 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736571361.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:37 Heat of formation + Delta-G solvation = -58.298056 kcal Electronic energy + Delta-G solvation = -30247.307541 eV Core-core repulsion = 26133.344541 eV Total energy + Delta-G solvation = -4113.963000 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.43680 -41.12696 -40.31517 -38.44281 -37.58055 -37.04891 -36.41797 -34.35258 -33.21692 -31.85692 -30.62613 -27.87801 -27.45988 -25.59781 -24.99808 -23.90960 -23.23518 -22.61909 -21.53597 -20.50731 -20.05769 -19.00521 -18.52408 -18.20096 -17.53888 -17.10158 -16.94146 -16.50830 -16.35211 -16.12289 -15.79024 -15.57430 -15.38512 -15.15785 -14.70246 -14.45930 -14.38289 -14.23264 -13.93094 -13.75375 -13.55349 -13.20367 -12.98145 -12.74558 -12.67646 -12.50712 -12.46668 -12.42704 -12.22828 -12.12172 -11.90086 -11.61504 -11.46035 -11.27182 -11.12246 -10.85589 -10.26146 -9.80611 -9.41261 -9.06862 -8.47782 -6.17743 0.06973 0.63981 1.19834 1.31106 1.41269 1.50742 1.73181 1.92281 2.13638 2.29446 2.79916 3.00827 3.16927 3.36563 3.54032 3.55869 3.81610 3.97734 4.04032 4.05648 4.13913 4.14889 4.23581 4.35036 4.42162 4.49193 4.54260 4.72369 4.77462 4.84155 4.85699 4.89158 4.92116 5.02976 5.08314 5.13343 5.28278 5.41128 5.47260 5.53651 5.62476 5.66293 5.82144 5.92937 6.08992 6.39675 6.92237 7.02771 7.39210 7.75351 8.73033 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.013771 B = 0.004462 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.820465 B = 6273.544385 C = 7954.250416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.100 4.100 3 H 0.157 0.843 4 C 0.070 3.930 5 N -0.578 5.578 6 C 0.553 3.447 7 O -0.544 6.544 8 C -0.245 4.245 9 C -0.069 4.069 10 C -0.205 4.205 11 C -0.039 4.039 12 C -0.255 4.255 13 C 0.152 3.848 14 O -0.189 6.189 15 C -0.425 4.425 16 H 0.106 0.894 17 C -0.020 4.020 18 N -0.905 5.905 19 Si 1.021 2.979 20 H -0.247 1.247 21 H -0.269 1.269 22 H -0.267 1.267 23 C 0.090 3.910 24 C -0.199 4.199 25 C -0.198 4.198 26 C 0.490 3.510 27 O -0.534 6.534 28 O -0.504 6.504 29 H 0.072 0.928 30 H 0.044 0.956 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.120 0.880 34 H 0.184 0.816 35 H 0.148 0.852 36 H 0.154 0.846 37 H 0.127 0.873 38 H 0.271 0.729 39 H 0.181 0.819 40 H 0.086 0.914 41 H 0.121 0.879 42 H 0.126 0.874 43 H 0.046 0.954 44 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.461 9.062 18.839 22.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.120 4.120 3 H 0.174 0.826 4 C -0.052 4.052 5 N -0.309 5.309 6 C 0.345 3.655 7 O -0.422 6.422 8 C -0.249 4.249 9 C -0.086 4.086 10 C -0.223 4.223 11 C -0.057 4.057 12 C -0.275 4.275 13 C 0.097 3.903 14 O -0.092 6.092 15 C -0.501 4.501 16 H 0.123 0.877 17 C -0.219 4.219 18 N -0.540 5.540 19 Si 0.840 3.160 20 H -0.170 1.170 21 H -0.194 1.194 22 H -0.192 1.192 23 C -0.013 4.013 24 C -0.237 4.237 25 C -0.236 4.236 26 C 0.333 3.667 27 O -0.424 6.424 28 O -0.317 6.317 29 H 0.091 0.909 30 H 0.063 0.937 31 H 0.111 0.889 32 H 0.124 0.876 33 H 0.137 0.863 34 H 0.200 0.800 35 H 0.166 0.834 36 H 0.172 0.828 37 H 0.144 0.856 38 H 0.080 0.920 39 H 0.198 0.802 40 H 0.104 0.896 41 H 0.139 0.861 42 H 0.144 0.856 43 H 0.065 0.935 44 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges 7.093 9.381 17.575 21.147 hybrid contribution -0.228 -1.255 -0.653 1.433 sum 6.866 8.126 16.922 19.988 Atomic orbital electron populations 1.21995 0.91817 1.02891 1.04435 1.21503 0.98616 1.03373 0.88534 0.82578 1.22693 0.93670 1.04694 0.84103 1.47052 1.40007 1.10011 1.33860 1.18455 0.79610 0.84315 0.83095 1.90788 1.43913 1.80682 1.26826 1.19259 1.16660 0.91977 0.97050 1.22474 0.93535 1.00887 0.91750 1.21097 1.07385 0.92392 1.01471 1.21403 0.92355 0.99941 0.92044 1.21303 1.11452 0.96789 0.97919 1.19984 0.90704 0.94120 0.85454 1.84122 1.67289 1.36871 1.20902 1.22032 1.41733 0.91171 0.95185 0.87724 1.26712 0.97172 1.02479 0.95529 1.70295 1.45478 1.29707 1.08552 0.84511 0.77733 0.75382 0.78384 1.16969 1.19405 1.19237 1.22029 1.03049 0.85231 0.91017 1.23601 0.93275 1.02849 1.03951 1.23188 1.01881 1.02287 0.96264 1.23193 0.76218 0.81767 0.85559 1.90791 1.37091 1.26945 1.87601 1.84469 1.71780 1.58893 1.16597 0.90936 0.93702 0.88943 0.87610 0.86296 0.79993 0.83395 0.82833 0.85563 0.91984 0.80194 0.89615 0.86103 0.85566 0.93509 0.70733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 8.00 71.98 0.58 -2.55 16 2 C -0.10 -1.68 2.81 -11.54 -0.03 -1.71 16 3 H 0.16 1.42 8.14 -2.39 -0.02 1.40 16 4 C 0.07 1.71 4.69 86.38 0.41 2.11 16 5 N -0.58 -18.65 1.80 -801.57 -1.45 -20.09 16 6 C 0.55 25.28 6.72 86.69 0.58 25.86 16 7 O -0.54 -30.66 11.14 15.78 0.18 -30.49 16 8 C -0.24 -11.20 5.61 -19.99 -0.11 -11.31 16 9 C -0.07 -2.44 5.74 22.52 0.13 -2.31 16 10 C -0.20 -6.57 10.03 22.25 0.22 -6.35 16 11 C -0.04 -1.35 10.03 22.30 0.22 -1.13 16 12 C -0.26 -11.45 9.14 22.36 0.20 -11.25 16 13 C 0.15 8.11 6.64 22.91 0.15 8.26 16 14 O -0.19 -12.13 8.06 -0.22 0.00 -12.13 16 15 C -0.43 -25.96 9.46 67.93 0.64 -25.32 16 16 H 0.11 5.78 5.25 -2.91 -0.02 5.77 16 17 C -0.02 -1.17 5.49 84.85 0.47 -0.70 16 18 N -0.90 -59.02 13.67 21.62 0.30 -58.73 16 19 Si 1.02 44.61 29.55 68.60 2.03 46.64 16 20 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 21 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 22 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 23 C 0.09 2.42 5.60 44.99 0.25 2.67 16 24 C -0.20 -6.49 9.64 30.62 0.30 -6.20 16 25 C -0.20 -6.47 9.85 30.62 0.30 -6.17 16 26 C 0.49 8.22 6.82 71.24 0.49 8.70 16 27 O -0.53 -12.14 15.58 21.98 0.34 -11.80 16 28 O -0.50 -5.36 13.17 -51.34 -0.68 -6.04 16 29 H 0.07 1.61 6.86 -2.38 -0.02 1.60 16 30 H 0.04 1.19 5.11 -2.39 -0.01 1.18 16 31 H 0.09 1.43 7.92 -2.39 -0.02 1.41 16 32 H 0.11 2.05 8.14 -2.39 -0.02 2.04 16 33 H 0.12 3.54 2.99 -12.60 -0.04 3.50 16 34 H 0.18 5.18 0.69 -2.91 0.00 5.17 16 35 H 0.15 3.70 8.06 -2.91 -0.02 3.68 16 36 H 0.15 3.96 8.06 -2.91 -0.02 3.94 16 37 H 0.13 5.67 5.68 -2.91 -0.02 5.65 16 38 H 0.27 16.17 8.31 -92.71 -0.77 15.40 16 39 H 0.18 2.76 8.14 -2.39 -0.02 2.74 16 40 H 0.09 3.82 5.34 -2.57 -0.01 3.81 16 41 H 0.12 2.97 8.14 -2.38 -0.02 2.95 16 42 H 0.13 3.11 8.14 -2.39 -0.02 3.09 16 43 H 0.05 2.07 7.45 -2.39 -0.02 2.05 16 44 H 0.43 1.09 9.10 -74.06 -0.67 0.42 16 Total: -1.00 -90.32 352.09 5.89 -84.42 By element: Atomic # 1 Polarization: 35.24 SS G_CDS: 0.38 Total: 35.62 kcal Atomic # 6 Polarization: -32.20 SS G_CDS: 4.80 Total: -27.40 kcal Atomic # 7 Polarization: -77.67 SS G_CDS: -1.15 Total: -78.82 kcal Atomic # 8 Polarization: -60.30 SS G_CDS: -0.16 Total: -60.46 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -90.32 5.89 -84.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736571361.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.123 kcal (2) G-P(sol) polarization free energy of solvation -90.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds