Wall clock time and date at job start Tue Mar 31 2020 18:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47099 * 2 1 4 4 C 1.52998 * 109.47586 * 119.99824 * 2 1 3 5 5 N 1.46495 * 109.47223 * 293.61754 * 4 2 1 6 6 C 1.34776 * 120.00397 * 137.18986 * 5 4 2 7 7 O 1.21594 * 119.99809 * 178.47624 * 6 5 4 8 8 C 1.47529 * 119.99819 * 358.47474 * 6 5 4 9 9 C 1.39666 * 120.19739 * 313.59485 * 8 6 5 10 10 C 1.37831 * 119.91635 * 179.72406 * 9 8 6 11 11 C 1.38569 * 120.32639 * 0.57763 * 10 9 8 12 12 C 1.38026 * 120.40014 * 359.70336 * 11 10 9 13 13 C 1.38839 * 120.07050 * 359.97438 * 12 11 10 14 14 O 1.35520 * 120.15793 * 180.02562 * 13 12 11 15 15 C 1.34817 * 117.00295 * 5.71034 * 14 13 12 16 16 H 1.07997 * 119.99575 * 5.39736 * 15 14 13 17 17 C 1.38699 * 120.00053 * 185.38937 * 15 14 13 18 18 N 1.31519 * 120.00008 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99874 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47151 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46985 * 120.00209 * 19 17 15 22 22 H 1.48497 * 109.47194 * 240.00208 * 19 17 15 23 23 C 1.46503 * 119.99750 * 317.18271 * 5 4 2 24 24 C 1.52998 * 117.50084 * 197.36852 * 23 5 4 25 25 C 1.52998 * 60.00265 * 252.51473 * 24 23 5 26 26 C 1.50701 * 109.47376 * 240.00400 * 2 1 3 27 27 O 1.20826 * 119.99776 * 240.00015 * 26 2 1 28 28 O 1.34228 * 120.00142 * 59.99745 * 26 2 1 29 29 H 1.08999 * 109.46973 * 41.61018 * 1 2 3 30 30 H 1.09003 * 109.46639 * 161.60482 * 1 2 3 31 31 H 1.09002 * 109.46950 * 281.60589 * 1 2 3 32 32 H 1.09006 * 109.46665 * 53.61083 * 4 2 1 33 33 H 1.09000 * 109.47443 * 173.61006 * 4 2 1 34 34 H 1.07996 * 120.03905 * 0.02562 * 9 8 6 35 35 H 1.08001 * 119.83988 * 180.32020 * 10 9 8 36 36 H 1.08002 * 119.79982 * 179.71838 * 11 10 9 37 37 H 1.08002 * 119.96614 * 180.02562 * 12 11 10 38 38 H 0.97000 * 120.00031 * 179.97438 * 18 17 15 39 39 H 1.09000 * 115.55114 * 343.08100 * 23 5 4 40 40 H 1.09003 * 117.49716 * 0.02562 * 24 23 5 41 41 H 1.08998 * 117.50139 * 145.02655 * 24 23 5 42 42 H 1.09007 * 117.49866 * 252.50947 * 25 24 23 43 43 H 1.08999 * 117.52202 * 107.48238 * 25 24 23 44 44 H 0.96697 * 116.99708 * 180.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.6812 0.0523 2.4404 6 6 1.2080 -0.5761 3.5347 7 8 0.9363 0.0630 4.5329 8 6 1.0195 -2.0392 3.5215 9 6 0.3888 -2.6565 2.4390 10 6 0.2208 -4.0245 2.4300 11 6 0.6642 -4.7909 3.4959 12 6 1.2841 -4.1941 4.5751 13 6 1.4678 -2.8181 4.5984 14 8 2.0766 -2.2303 5.6569 15 6 2.5867 -3.0469 6.6006 16 1 2.5777 -4.1165 6.4514 17 6 3.1232 -2.5133 7.7631 18 7 3.1339 -1.2108 7.9449 19 14 3.8306 -3.6448 9.0703 20 1 3.6994 -5.0560 8.6272 21 1 5.2652 -3.3234 9.2794 22 1 3.0900 -3.4543 10.3433 23 6 1.8370 1.5091 2.4422 24 6 1.8442 2.2172 3.7984 25 6 0.6323 2.3478 2.8737 26 6 2.0324 -0.7103 -1.2305 27 8 2.7270 -1.6927 -1.1196 28 8 1.7081 -0.2517 -2.4496 29 1 -0.3633 0.7684 -0.6824 30 1 -0.3633 -0.9752 -0.3243 31 1 -0.3633 0.2067 1.0067 32 1 1.5864 -1.7106 1.3082 33 1 3.1241 -0.8213 1.1939 34 1 0.0374 -2.0631 1.6078 35 1 -0.2625 -4.5011 1.5899 36 1 0.5241 -5.8617 3.4820 37 1 1.6273 -4.7982 5.4020 38 1 3.5087 -0.8377 8.7581 39 1 2.4778 1.9143 1.6591 40 1 1.7334 1.5991 4.6894 41 1 2.4899 3.0885 3.9079 42 1 0.4807 3.3050 2.3747 43 1 -0.2763 1.8158 3.1559 44 1 2.0536 -0.7409 -3.2088 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736571362.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:42 Heat of formation + Delta-G solvation = -70.017315 kcal Electronic energy + Delta-G solvation = -29734.346930 eV Core-core repulsion = 25619.875744 eV Total energy + Delta-G solvation = -4114.471185 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.81521 -40.03406 -38.70634 -36.64575 -36.44001 -36.01156 -35.06160 -32.37078 -32.31840 -30.30392 -28.99171 -26.56576 -25.47623 -24.57665 -23.76701 -22.29302 -21.94909 -21.23024 -20.52831 -18.93146 -18.32468 -18.09236 -17.25052 -16.72079 -16.18314 -16.04994 -15.68127 -15.14098 -14.85978 -14.57707 -14.42594 -14.08500 -13.80632 -13.61323 -13.59169 -13.26256 -13.13962 -12.82308 -12.50965 -12.43270 -12.27084 -11.85642 -11.73949 -11.68582 -11.48904 -11.24484 -11.17900 -10.94955 -10.88933 -10.68835 -10.62824 -10.50932 -10.41135 -10.02533 -9.57711 -8.90486 -8.71543 -8.21862 -8.01235 -7.35429 -6.48450 -4.08523 1.72893 2.01450 2.26097 2.67569 3.10733 3.11382 3.17362 3.29374 3.47686 3.91438 4.21272 4.40805 4.51063 4.66786 4.85460 4.97858 5.03730 5.08879 5.10576 5.25685 5.38967 5.41274 5.46539 5.51334 5.60994 5.68712 5.71382 5.83545 5.93975 5.96456 6.00779 6.05531 6.11588 6.28003 6.40486 6.51844 6.61933 6.73844 6.92243 7.00632 7.21041 7.22381 7.25881 7.64796 7.67341 7.80310 7.93029 8.88096 8.93807 9.61637 10.66704 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.013355 B = 0.004051 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.132608 B = 6910.919970 C = 8099.406458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 H 0.113 0.887 4 C 0.107 3.893 5 N -0.588 5.588 6 C 0.578 3.422 7 O -0.501 6.501 8 C -0.223 4.223 9 C -0.050 4.050 10 C -0.222 4.222 11 C -0.053 4.053 12 C -0.232 4.232 13 C 0.190 3.810 14 O -0.144 6.144 15 C -0.400 4.400 16 H 0.095 0.905 17 C 0.044 3.956 18 N -0.841 5.841 19 Si 0.941 3.059 20 H -0.266 1.266 21 H -0.275 1.275 22 H -0.275 1.275 23 C 0.069 3.931 24 C -0.193 4.193 25 C -0.190 4.190 26 C 0.485 3.515 27 O -0.507 6.507 28 O -0.516 6.516 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.118 0.882 33 H 0.073 0.927 34 H 0.119 0.881 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.133 0.867 38 H 0.271 0.729 39 H 0.120 0.880 40 H 0.152 0.848 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.094 0.906 44 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.704 2.347 -17.069 17.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 H 0.131 0.869 4 C -0.016 4.016 5 N -0.321 5.321 6 C 0.369 3.631 7 O -0.375 6.375 8 C -0.227 4.227 9 C -0.068 4.068 10 C -0.241 4.241 11 C -0.072 4.072 12 C -0.251 4.251 13 C 0.132 3.868 14 O -0.044 6.044 15 C -0.476 4.476 16 H 0.112 0.888 17 C -0.163 4.163 18 N -0.473 5.473 19 Si 0.766 3.234 20 H -0.190 1.190 21 H -0.200 1.200 22 H -0.200 1.200 23 C -0.035 4.035 24 C -0.230 4.230 25 C -0.229 4.229 26 C 0.326 3.674 27 O -0.394 6.394 28 O -0.328 6.328 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.135 0.865 33 H 0.091 0.909 34 H 0.136 0.864 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.150 0.850 38 H 0.081 0.919 39 H 0.138 0.862 40 H 0.169 0.831 41 H 0.101 0.899 42 H 0.108 0.892 43 H 0.112 0.888 44 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -3.666 3.049 -15.857 16.558 hybrid contribution 0.692 -0.928 -0.092 1.161 sum -2.974 2.121 -15.949 16.362 Atomic orbital electron populations 1.21783 0.91416 1.02780 1.04132 1.21356 0.99146 1.01515 0.89584 0.86897 1.21859 1.01325 0.96740 0.81716 1.47112 1.66065 1.05131 1.13763 1.18208 0.76048 0.87266 0.81548 1.90615 1.48935 1.66028 1.31960 1.18718 1.14638 0.92070 0.97293 1.20770 0.96331 0.94755 0.94959 1.20482 1.09615 0.93503 1.00515 1.20898 0.94742 0.98737 0.92799 1.21166 1.08187 0.94476 1.01292 1.19171 0.89415 0.90688 0.87551 1.84045 1.59590 1.34818 1.25950 1.21467 1.38451 0.90383 0.97301 0.88806 1.25357 0.96888 0.96611 0.97403 1.70089 1.40315 1.10489 1.26398 0.85650 0.78682 0.79357 0.79757 1.18970 1.20039 1.19999 1.21473 1.01928 0.79481 1.00642 1.24077 0.99300 1.02033 0.97570 1.23223 0.94140 1.00649 1.04866 1.23352 0.76853 0.82502 0.84643 1.90772 1.35502 1.25933 1.87188 1.84534 1.72400 1.59026 1.16821 0.91139 0.92050 0.90223 0.86482 0.90899 0.86371 0.87140 0.87059 0.84966 0.91871 0.86205 0.83121 0.89865 0.89165 0.88766 0.73249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.31 37.16 0.31 -1.06 16 2 C -0.10 -1.01 2.55 -91.77 -0.23 -1.24 16 3 H 0.11 1.02 6.48 -51.93 -0.34 0.68 16 4 C 0.11 1.51 4.24 -4.05 -0.02 1.49 16 5 N -0.59 -9.75 2.40 -167.33 -0.40 -10.15 16 6 C 0.58 12.33 6.78 -12.47 -0.08 12.25 16 7 O -0.50 -12.50 12.22 -6.53 -0.08 -12.58 16 8 C -0.22 -4.77 5.22 -104.81 -0.55 -5.32 16 9 C -0.05 -0.87 7.39 -39.20 -0.29 -1.16 16 10 C -0.22 -3.67 10.02 -39.61 -0.40 -4.07 16 11 C -0.05 -0.94 10.03 -39.54 -0.40 -1.34 16 12 C -0.23 -4.95 9.13 -39.44 -0.36 -5.31 16 13 C 0.19 4.64 6.63 -38.60 -0.26 4.39 16 14 O -0.14 -4.17 8.72 -11.02 -0.10 -4.26 16 15 C -0.40 -11.17 9.44 30.90 0.29 -10.87 16 16 H 0.09 2.39 5.30 -52.49 -0.28 2.12 16 17 C 0.04 1.22 5.49 -17.51 -0.10 1.12 16 18 N -0.84 -24.89 13.67 55.48 0.76 -24.13 16 19 Si 0.94 20.41 29.55 -169.99 -5.02 15.39 16 20 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 21 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 22 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 23 C 0.07 1.01 5.65 -67.93 -0.38 0.62 16 24 C -0.19 -3.26 9.64 -26.73 -0.26 -3.52 16 25 C -0.19 -2.68 9.89 -26.73 -0.26 -2.95 16 26 C 0.49 5.16 7.54 36.01 0.27 5.43 16 27 O -0.51 -7.08 16.65 -18.75 -0.31 -7.39 16 28 O -0.52 -3.96 13.35 -39.25 -0.52 -4.48 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.56 7.71 -51.93 -0.40 0.16 16 31 H 0.08 0.88 7.40 -51.93 -0.38 0.50 16 32 H 0.12 1.77 3.52 -51.93 -0.18 1.59 16 33 H 0.07 1.08 7.91 -51.93 -0.41 0.67 16 34 H 0.12 1.71 5.33 -52.49 -0.28 1.43 16 35 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 36 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 37 H 0.13 2.79 5.71 -52.49 -0.30 2.49 16 38 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 39 H 0.12 1.37 7.07 -51.93 -0.37 1.01 16 40 H 0.15 3.34 5.03 -52.99 -0.27 3.07 16 41 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.09 1.01 8.14 -51.92 -0.42 0.59 16 43 H 0.09 1.51 7.74 -51.93 -0.40 1.11 16 44 H 0.41 1.47 9.10 45.56 0.41 1.89 16 LS Contribution 362.96 15.07 5.47 5.47 Total: -1.00 -34.78 362.96 -7.36 -42.14 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -4.44 Total: 11.50 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -2.71 Total: -11.51 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: 0.36 Total: -34.28 kcal Atomic # 8 Polarization: -27.70 SS G_CDS: -1.01 Total: -28.71 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.78 -7.36 -42.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736571362.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.873 kcal (2) G-P(sol) polarization free energy of solvation -34.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds