Wall clock time and date at job start Tue Mar 31 2020 18:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47099 * 2 1 4 4 C 1.52998 * 109.47586 * 119.99824 * 2 1 3 5 5 N 1.46495 * 109.47223 * 293.61754 * 4 2 1 6 6 C 1.34776 * 120.00397 * 137.18986 * 5 4 2 7 7 O 1.21594 * 119.99809 * 178.47624 * 6 5 4 8 8 C 1.47529 * 119.99819 * 358.47474 * 6 5 4 9 9 C 1.39666 * 120.19739 * 313.59485 * 8 6 5 10 10 C 1.37831 * 119.91635 * 179.72406 * 9 8 6 11 11 C 1.38569 * 120.32639 * 0.57763 * 10 9 8 12 12 C 1.38026 * 120.40014 * 359.70336 * 11 10 9 13 13 C 1.38839 * 120.07050 * 359.97438 * 12 11 10 14 14 O 1.35520 * 120.15793 * 180.02562 * 13 12 11 15 15 C 1.34817 * 117.00295 * 5.71034 * 14 13 12 16 16 H 1.07997 * 119.99575 * 5.39736 * 15 14 13 17 17 C 1.38699 * 120.00053 * 185.38937 * 15 14 13 18 18 N 1.31519 * 120.00008 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99874 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47151 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46985 * 120.00209 * 19 17 15 22 22 H 1.48497 * 109.47194 * 240.00208 * 19 17 15 23 23 C 1.46503 * 119.99750 * 317.18271 * 5 4 2 24 24 C 1.52998 * 117.50084 * 197.36852 * 23 5 4 25 25 C 1.52998 * 60.00265 * 252.51473 * 24 23 5 26 26 C 1.50701 * 109.47376 * 240.00400 * 2 1 3 27 27 O 1.20826 * 119.99776 * 240.00015 * 26 2 1 28 28 O 1.34228 * 120.00142 * 59.99745 * 26 2 1 29 29 H 1.08999 * 109.46973 * 41.61018 * 1 2 3 30 30 H 1.09003 * 109.46639 * 161.60482 * 1 2 3 31 31 H 1.09002 * 109.46950 * 281.60589 * 1 2 3 32 32 H 1.09006 * 109.46665 * 53.61083 * 4 2 1 33 33 H 1.09000 * 109.47443 * 173.61006 * 4 2 1 34 34 H 1.07996 * 120.03905 * 0.02562 * 9 8 6 35 35 H 1.08001 * 119.83988 * 180.32020 * 10 9 8 36 36 H 1.08002 * 119.79982 * 179.71838 * 11 10 9 37 37 H 1.08002 * 119.96614 * 180.02562 * 12 11 10 38 38 H 0.97000 * 120.00031 * 179.97438 * 18 17 15 39 39 H 1.09000 * 115.55114 * 343.08100 * 23 5 4 40 40 H 1.09003 * 117.49716 * 0.02562 * 24 23 5 41 41 H 1.08998 * 117.50139 * 145.02655 * 24 23 5 42 42 H 1.09007 * 117.49866 * 252.50947 * 25 24 23 43 43 H 1.08999 * 117.52202 * 107.48238 * 25 24 23 44 44 H 0.96697 * 116.99708 * 180.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.6812 0.0523 2.4404 6 6 1.2080 -0.5761 3.5347 7 8 0.9363 0.0630 4.5329 8 6 1.0195 -2.0392 3.5215 9 6 0.3888 -2.6565 2.4390 10 6 0.2208 -4.0245 2.4300 11 6 0.6642 -4.7909 3.4959 12 6 1.2841 -4.1941 4.5751 13 6 1.4678 -2.8181 4.5984 14 8 2.0766 -2.2303 5.6569 15 6 2.5867 -3.0469 6.6006 16 1 2.5777 -4.1165 6.4514 17 6 3.1232 -2.5133 7.7631 18 7 3.1339 -1.2108 7.9449 19 14 3.8306 -3.6448 9.0703 20 1 3.6994 -5.0560 8.6272 21 1 5.2652 -3.3234 9.2794 22 1 3.0900 -3.4543 10.3433 23 6 1.8370 1.5091 2.4422 24 6 1.8442 2.2172 3.7984 25 6 0.6323 2.3478 2.8737 26 6 2.0324 -0.7103 -1.2305 27 8 2.7270 -1.6927 -1.1196 28 8 1.7081 -0.2517 -2.4496 29 1 -0.3633 0.7684 -0.6824 30 1 -0.3633 -0.9752 -0.3243 31 1 -0.3633 0.2067 1.0067 32 1 1.5864 -1.7106 1.3082 33 1 3.1241 -0.8213 1.1939 34 1 0.0374 -2.0631 1.6078 35 1 -0.2625 -4.5011 1.5899 36 1 0.5241 -5.8617 3.4820 37 1 1.6273 -4.7982 5.4020 38 1 3.5087 -0.8377 8.7581 39 1 2.4778 1.9143 1.6591 40 1 1.7334 1.5991 4.6894 41 1 2.4899 3.0885 3.9079 42 1 0.4807 3.3050 2.3747 43 1 -0.2763 1.8158 3.1559 44 1 2.0536 -0.7409 -3.2088 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736571362.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:41 Heat of formation + Delta-G solvation = -93.843280 kcal Electronic energy + Delta-G solvation = -29735.380101 eV Core-core repulsion = 25619.875744 eV Total energy + Delta-G solvation = -4115.504357 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.01559 -41.19783 -40.34084 -38.24434 -37.66820 -37.06772 -36.23852 -34.35361 -33.51903 -31.81921 -30.64433 -27.59376 -27.44001 -25.57937 -25.16211 -23.77420 -23.23997 -22.75383 -21.50660 -20.39202 -19.96035 -19.14509 -18.58117 -18.17165 -17.30052 -17.12157 -16.98973 -16.60828 -16.38290 -16.13554 -15.84075 -15.61287 -15.38904 -14.94887 -14.77949 -14.63148 -14.55547 -14.22988 -13.88053 -13.65501 -13.55187 -13.21952 -13.03166 -12.85381 -12.71660 -12.59568 -12.51458 -12.46600 -12.21419 -12.11206 -11.93413 -11.77247 -11.46664 -11.40061 -11.21622 -10.85686 -10.33217 -9.76970 -9.39407 -9.07987 -8.48368 -6.18883 0.15782 0.65854 1.21352 1.31720 1.41481 1.51125 1.67230 1.78732 2.13797 2.31635 2.78549 3.00027 3.13693 3.36529 3.42269 3.61884 3.79791 3.96219 4.02297 4.05751 4.13708 4.21262 4.27688 4.42097 4.45263 4.49349 4.56634 4.71267 4.74166 4.83371 4.86612 4.91773 4.98196 5.04384 5.08623 5.12488 5.29547 5.40724 5.47856 5.55640 5.64145 5.65398 5.82048 5.93534 6.10842 6.35107 6.92693 7.02700 7.31171 7.73919 8.73088 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.013355 B = 0.004051 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.132608 B = 6910.919970 C = 8099.406458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.088 4.088 3 H 0.136 0.864 4 C 0.104 3.896 5 N -0.577 5.577 6 C 0.566 3.434 7 O -0.551 6.551 8 C -0.236 4.236 9 C -0.044 4.044 10 C -0.195 4.195 11 C -0.044 4.044 12 C -0.249 4.249 13 C 0.148 3.852 14 O -0.206 6.206 15 C -0.422 4.422 16 H 0.106 0.894 17 C -0.021 4.021 18 N -0.909 5.909 19 Si 1.021 2.979 20 H -0.246 1.246 21 H -0.268 1.268 22 H -0.269 1.269 23 C 0.073 3.927 24 C -0.227 4.227 25 C -0.161 4.161 26 C 0.497 3.503 27 O -0.546 6.546 28 O -0.503 6.503 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.108 0.892 33 H 0.063 0.937 34 H 0.153 0.847 35 H 0.162 0.838 36 H 0.155 0.845 37 H 0.125 0.875 38 H 0.271 0.729 39 H 0.165 0.835 40 H 0.093 0.907 41 H 0.104 0.896 42 H 0.134 0.866 43 H 0.070 0.930 44 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.863 1.207 -21.519 22.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.108 4.108 3 H 0.153 0.847 4 C -0.018 4.018 5 N -0.309 5.309 6 C 0.357 3.643 7 O -0.429 6.429 8 C -0.241 4.241 9 C -0.062 4.062 10 C -0.213 4.213 11 C -0.062 4.062 12 C -0.268 4.268 13 C 0.095 3.905 14 O -0.110 6.110 15 C -0.498 4.498 16 H 0.123 0.877 17 C -0.219 4.219 18 N -0.546 5.546 19 Si 0.839 3.161 20 H -0.169 1.169 21 H -0.193 1.193 22 H -0.194 1.194 23 C -0.030 4.030 24 C -0.265 4.265 25 C -0.200 4.200 26 C 0.340 3.660 27 O -0.436 6.436 28 O -0.317 6.317 29 H 0.113 0.887 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.125 0.875 33 H 0.081 0.919 34 H 0.170 0.830 35 H 0.179 0.821 36 H 0.173 0.827 37 H 0.143 0.857 38 H 0.080 0.920 39 H 0.182 0.818 40 H 0.111 0.889 41 H 0.122 0.878 42 H 0.152 0.848 43 H 0.088 0.912 44 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -4.852 1.883 -20.436 21.088 hybrid contribution 0.868 -0.630 0.859 1.375 sum -3.984 1.253 -19.577 20.017 Atomic orbital electron populations 1.21785 0.90246 1.04113 1.03730 1.21228 0.99899 1.01949 0.87710 0.84656 1.21906 1.00835 0.96627 0.82389 1.47081 1.64189 1.06288 1.13300 1.18442 0.76243 0.87503 0.82081 1.90648 1.51282 1.66988 1.34028 1.19179 1.14597 0.92544 0.97750 1.21204 0.94782 0.95888 0.94362 1.21158 1.06414 0.92884 1.00883 1.21397 0.92497 1.01065 0.91289 1.21315 1.09399 0.93272 1.02840 1.19896 0.90483 0.92653 0.87506 1.84033 1.62907 1.36145 1.27884 1.21977 1.38961 0.91064 0.97779 0.87664 1.26695 0.97182 0.98311 0.99746 1.70271 1.43651 1.13082 1.27565 0.84513 0.77757 0.77687 0.76094 1.16934 1.19344 1.19427 1.21916 1.02914 0.78220 0.99940 1.23823 1.02854 1.02924 0.96856 1.23209 0.92094 1.01874 1.02807 1.23154 0.75875 0.81560 0.85384 1.90778 1.37366 1.27686 1.87797 1.84474 1.71827 1.58845 1.16545 0.88704 0.91375 0.91979 0.87460 0.91904 0.82999 0.82065 0.82723 0.85718 0.91957 0.81768 0.88939 0.87765 0.84802 0.91169 0.70871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 8.31 71.98 0.60 -1.51 16 2 C -0.09 -1.53 2.55 -11.54 -0.03 -1.56 16 3 H 0.14 1.78 6.48 -2.39 -0.02 1.76 16 4 C 0.10 2.80 4.24 86.38 0.37 3.16 16 5 N -0.58 -19.25 2.40 -801.57 -1.93 -21.18 16 6 C 0.57 25.56 6.78 86.69 0.59 26.15 16 7 O -0.55 -30.20 12.22 7.28 0.09 -30.11 16 8 C -0.24 -10.45 5.22 -19.99 -0.10 -10.56 16 9 C -0.04 -1.45 7.39 22.52 0.17 -1.28 16 10 C -0.20 -5.60 10.02 22.25 0.22 -5.37 16 11 C -0.04 -1.43 10.03 22.30 0.22 -1.21 16 12 C -0.25 -10.80 9.13 22.36 0.20 -10.60 16 13 C 0.15 7.69 6.63 22.91 0.15 7.84 16 14 O -0.21 -12.99 8.72 -8.78 -0.08 -13.07 16 15 C -0.42 -25.40 9.44 67.93 0.64 -24.76 16 16 H 0.11 5.73 5.30 -2.91 -0.02 5.71 16 17 C -0.02 -1.21 5.49 84.85 0.47 -0.74 16 18 N -0.91 -58.78 13.67 21.62 0.30 -58.49 16 19 Si 1.02 44.22 29.55 68.60 2.03 46.25 16 20 H -0.25 -9.68 7.11 99.48 0.71 -8.98 16 21 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 22 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 23 C 0.07 2.07 5.65 44.99 0.25 2.32 16 24 C -0.23 -8.05 9.64 30.59 0.29 -7.75 16 25 C -0.16 -4.40 9.89 30.59 0.30 -4.10 16 26 C 0.50 8.73 7.54 71.24 0.54 9.27 16 27 O -0.55 -13.82 16.65 21.96 0.37 -13.45 16 28 O -0.50 -5.39 13.35 -51.40 -0.69 -6.08 16 29 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 0.92 7.71 -2.39 -0.02 0.90 16 31 H 0.06 1.19 7.40 -2.39 -0.02 1.17 16 32 H 0.11 3.05 3.52 -2.38 -0.01 3.04 16 33 H 0.06 1.83 7.91 -2.39 -0.02 1.81 16 34 H 0.15 3.89 5.33 -2.91 -0.02 3.88 16 35 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 36 H 0.16 3.68 8.06 -2.91 -0.02 3.66 16 37 H 0.13 5.47 5.71 -2.91 -0.02 5.45 16 38 H 0.27 16.06 8.31 -92.71 -0.77 15.28 16 39 H 0.17 3.16 7.07 -2.39 -0.02 3.14 16 40 H 0.09 4.57 5.03 -19.22 -0.10 4.47 16 41 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 42 H 0.13 2.51 8.14 -2.38 -0.02 2.49 16 43 H 0.07 2.28 7.74 -2.39 -0.02 2.26 16 44 H 0.43 1.20 9.10 -74.06 -0.67 0.52 16 Total: -1.00 -89.28 362.96 5.28 -84.00 By element: Atomic # 1 Polarization: 32.53 SS G_CDS: 0.31 Total: 32.85 kcal Atomic # 6 Polarization: -25.59 SS G_CDS: 4.88 Total: -20.71 kcal Atomic # 7 Polarization: -78.03 SS G_CDS: -1.63 Total: -79.66 kcal Atomic # 8 Polarization: -62.41 SS G_CDS: -0.31 Total: -62.71 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -89.28 5.28 -84.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736571362.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.847 kcal (2) G-P(sol) polarization free energy of solvation -89.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds