Wall clock time and date at job start Tue Mar 31 2020 18:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.47208 * 2 1 4 4 O 1.42901 * 109.46876 * 240.00452 * 2 1 3 5 5 C 1.35901 * 117.00108 * 92.05752 * 4 2 1 6 6 C 1.38755 * 120.08830 * 174.59790 * 5 4 2 7 7 C 1.38005 * 119.87262 * 179.97438 * 6 5 4 8 8 C 1.38541 * 120.29528 * 359.97438 * 7 6 5 9 9 C 1.38260 * 119.93730 * 0.02562 * 8 7 6 10 10 C 1.38416 * 119.90525 * 359.97438 * 9 8 7 11 11 C 1.51379 * 109.75937 * 180.02562 * 9 8 7 12 12 C 1.54337 * 105.17061 * 342.79769 * 11 9 8 13 13 C 1.51694 * 130.24696 * 179.80514 * 8 7 6 14 14 C 1.50691 * 109.47497 * 120.00113 * 2 1 3 15 15 O 1.21291 * 120.00297 * 105.38610 * 14 2 1 16 16 N 1.34776 * 120.00111 * 285.39596 * 14 2 1 17 17 C 1.37099 * 120.00122 * 185.70677 * 16 14 2 18 18 H 1.08000 * 119.99789 * 2.98049 * 17 16 14 19 19 C 1.38954 * 120.00133 * 182.99067 * 17 16 14 20 20 N 1.31412 * 119.99816 * 33.03619 * 19 17 16 21 21 Si 1.86803 * 119.99872 * 213.04465 * 19 17 16 22 22 H 1.48495 * 109.47149 * 94.99593 * 21 19 17 23 23 H 1.48495 * 109.46959 * 214.99540 * 21 19 17 24 24 H 1.48499 * 109.46906 * 334.99390 * 21 19 17 25 25 C 1.46503 * 119.99836 * 5.69756 * 16 14 2 26 26 C 1.50704 * 109.46896 * 92.22076 * 25 16 14 27 27 O 1.20826 * 119.99915 * 359.97438 * 26 25 16 28 28 O 1.34227 * 120.00006 * 179.97438 * 26 25 16 29 29 H 1.08998 * 109.46726 * 180.17498 * 1 2 3 30 30 H 1.09002 * 109.46675 * 300.17290 * 1 2 3 31 31 H 1.08999 * 109.47169 * 60.16678 * 1 2 3 32 32 H 1.07997 * 120.06146 * 359.95818 * 6 5 4 33 33 H 1.07997 * 119.85091 * 179.97438 * 7 6 5 34 34 H 1.07998 * 119.91270 * 179.97438 * 10 9 8 35 35 H 1.09000 * 110.30602 * 223.87037 * 11 9 8 36 36 H 1.09003 * 110.30450 * 101.72166 * 11 9 8 37 37 H 1.08998 * 110.82266 * 144.58972 * 12 11 9 38 38 H 1.08994 * 110.82269 * 267.94592 * 12 11 9 39 39 H 1.08996 * 110.25768 * 78.29170 * 13 8 7 40 40 H 1.09003 * 110.49420 * 316.04143 * 13 8 7 41 41 H 0.97006 * 119.99391 * 179.97438 * 20 19 17 42 42 H 1.09000 * 109.46906 * 212.21310 * 25 16 14 43 43 H 1.08991 * 109.47448 * 332.21696 * 25 16 14 44 44 H 0.96700 * 117.00157 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1669 5 6 2.2530 0.0909 -2.2631 6 6 2.8223 -0.4774 -3.3937 7 6 3.0703 0.3029 -4.5046 8 6 2.7529 1.6514 -4.4964 9 6 2.1856 2.2200 -3.3710 10 6 1.9356 1.4400 -2.2552 11 6 1.9350 3.6932 -3.6128 12 6 2.8056 4.0557 -4.8346 13 6 2.9280 2.7060 -5.5727 14 6 2.0325 -0.7104 1.2303 15 8 2.4974 -1.8269 1.1387 16 7 1.9650 -0.1052 2.4327 17 6 2.5270 -0.7006 3.5324 18 1 3.0653 -1.6309 3.4267 19 6 2.4037 -0.1074 4.7828 20 7 1.3196 0.5716 5.0839 21 14 3.7791 -0.2748 6.0357 22 1 4.6703 0.9102 5.9537 23 1 3.1983 -0.3639 7.3994 24 1 4.5621 -1.5038 5.7499 25 6 1.2913 1.1891 2.5645 26 6 -0.1540 0.9681 2.9296 27 8 -0.5780 -0.1552 3.0652 28 8 -0.9704 2.0192 3.1040 29 1 -0.3633 -1.0277 0.0031 30 1 -0.3633 0.5165 0.8885 31 1 -0.3633 0.5112 -0.8915 32 1 3.0711 -1.5283 -3.4041 33 1 3.5138 -0.1397 -5.3842 34 1 1.4928 1.8840 -1.3760 35 1 2.2407 4.2764 -2.7442 36 1 0.8818 3.8664 -3.8341 37 1 2.3065 4.7958 -5.4600 38 1 3.7853 4.4145 -4.5195 39 1 2.1428 2.6135 -6.3229 40 1 3.9095 2.6168 -6.0383 41 1 1.2334 0.9854 5.9571 42 1 1.7778 1.7740 3.3451 43 1 1.3490 1.7268 1.6182 44 1 -1.8892 1.8276 3.3371 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736703197.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:18 Heat of formation + Delta-G solvation = -116.788630 kcal Electronic energy + Delta-G solvation = -29374.931136 eV Core-core repulsion = 25258.431794 eV Total energy + Delta-G solvation = -4116.499342 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.59075 -39.72549 -38.76608 -37.70007 -35.37161 -34.91429 -34.52871 -32.35728 -31.24510 -30.98288 -28.42610 -27.79890 -27.12880 -25.50835 -23.86742 -22.40011 -21.26963 -20.98805 -20.83232 -19.21569 -17.76974 -17.24921 -17.01875 -16.40762 -15.94408 -15.72108 -15.67167 -15.21701 -15.12813 -14.87508 -14.54075 -14.17319 -13.73920 -13.60638 -13.45504 -13.13030 -12.99629 -12.65469 -12.53144 -12.10836 -11.94128 -11.85040 -11.79159 -11.68165 -11.54652 -11.34144 -11.28003 -11.16576 -11.03562 -10.58593 -10.49728 -10.43802 -10.39582 -10.28160 -9.72547 -9.07325 -8.79921 -8.55762 -8.13410 -7.84774 -6.63360 -3.90123 1.37173 1.48916 3.05711 3.14691 3.21154 3.28528 3.35557 3.46766 3.77636 4.01151 4.14314 4.31515 4.44744 4.61344 4.82492 4.84295 4.90388 5.01347 5.08175 5.15266 5.23363 5.37404 5.38669 5.52036 5.54506 5.58376 5.64635 5.67876 5.74468 5.79986 5.88108 5.93286 5.99381 6.12019 6.27059 6.35879 6.39166 6.41195 6.46650 6.65582 6.84735 7.38658 7.44725 7.58934 7.85958 8.25536 8.91279 8.96572 9.17363 9.69015 10.46306 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.015720 B = 0.003311 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.774115 B = 8455.343566 C = 8874.848601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.071 3.929 3 H 0.086 0.914 4 O -0.279 6.279 5 C 0.141 3.859 6 C -0.153 4.153 7 C -0.067 4.067 8 C -0.148 4.148 9 C -0.057 4.057 10 C -0.203 4.203 11 C -0.084 4.084 12 C -0.121 4.121 13 C -0.074 4.074 14 C 0.455 3.545 15 O -0.552 6.552 16 N -0.424 5.424 17 C -0.312 4.312 18 H 0.115 0.885 19 C 0.036 3.964 20 N -0.866 5.866 21 Si 0.922 3.078 22 H -0.276 1.276 23 H -0.285 1.285 24 H -0.267 1.267 25 C 0.136 3.864 26 C 0.489 3.511 27 O -0.496 6.496 28 O -0.534 6.534 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.133 0.867 33 H 0.124 0.876 34 H 0.128 0.872 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.273 0.727 42 H 0.128 0.872 43 H 0.078 0.922 44 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.806 10.840 -15.480 18.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.011 3.989 3 H 0.103 0.897 4 O -0.191 6.191 5 C 0.095 3.905 6 C -0.172 4.172 7 C -0.086 4.086 8 C -0.148 4.148 9 C -0.058 4.058 10 C -0.221 4.221 11 C -0.121 4.121 12 C -0.158 4.158 13 C -0.111 4.111 14 C 0.243 3.757 15 O -0.433 6.433 16 N -0.145 5.145 17 C -0.438 4.438 18 H 0.132 0.868 19 C -0.168 4.168 20 N -0.504 5.504 21 Si 0.748 3.252 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.191 1.191 25 C 0.009 3.991 26 C 0.330 3.670 27 O -0.381 6.381 28 O -0.346 6.346 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.151 0.849 33 H 0.142 0.858 34 H 0.146 0.854 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.146 0.854 43 H 0.095 0.905 44 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -0.319 9.894 -15.386 18.295 hybrid contribution -0.400 0.052 1.239 1.303 sum -0.719 9.946 -14.147 17.309 Atomic orbital electron populations 1.22331 0.93384 1.04398 1.02524 1.22317 0.95253 0.96557 0.84724 0.89669 1.86264 1.79841 1.34618 1.18345 1.19028 0.94002 0.89639 0.87835 1.20343 1.04054 1.00985 0.91781 1.20352 0.98578 0.92259 0.97364 1.20483 1.03568 0.94248 0.96516 1.20286 0.96690 0.95648 0.93137 1.20732 1.08360 0.93217 0.99838 1.21074 1.00536 0.91731 0.98740 1.22277 1.00252 0.96861 0.96408 1.20981 1.01896 0.92096 0.96126 1.19419 0.85574 0.87038 0.83685 1.90567 1.48866 1.18556 1.85349 1.43528 1.47188 1.16796 1.06965 1.19761 1.29497 1.09767 0.84758 0.86769 1.25166 0.96675 0.97248 0.97740 1.69951 1.22536 1.34975 1.22975 0.85973 0.81252 0.79204 0.78794 1.20147 1.21110 1.19073 1.20912 0.87414 0.88560 1.02215 1.23617 0.88618 0.82278 0.72535 1.90652 1.75960 1.25093 1.46397 1.84517 1.25482 1.41185 1.83395 0.90621 0.90862 0.91704 0.84917 0.85810 0.85419 0.90562 0.90132 0.90746 0.91008 0.90771 0.91080 0.91664 0.85402 0.90452 0.74974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.97 9.15 37.16 0.34 -2.63 16 2 C 0.07 1.39 1.78 -27.88 -0.05 1.34 16 3 H 0.09 1.43 4.52 -51.93 -0.23 1.20 16 4 O -0.28 -5.55 9.35 -38.90 -0.36 -5.91 16 5 C 0.14 2.34 6.67 -39.26 -0.26 2.08 16 6 C -0.15 -2.23 9.99 -39.48 -0.39 -2.62 16 7 C -0.07 -0.82 10.03 -39.56 -0.40 -1.22 16 8 C -0.15 -1.75 6.15 -104.01 -0.64 -2.39 16 9 C -0.06 -0.72 6.13 -104.21 -0.64 -1.36 16 10 C -0.20 -2.93 8.67 -39.38 -0.34 -3.27 16 11 C -0.08 -0.78 6.77 -26.85 -0.18 -0.97 16 12 C -0.12 -0.94 7.07 -25.34 -0.18 -1.12 16 13 C -0.07 -0.64 6.79 -26.70 -0.18 -0.82 16 14 C 0.46 11.30 6.95 -10.99 -0.08 11.22 16 15 O -0.55 -15.92 16.16 -13.92 -0.23 -16.15 16 16 N -0.42 -10.54 2.12 -116.10 -0.25 -10.78 16 17 C -0.31 -8.50 9.37 -14.93 -0.14 -8.64 16 18 H 0.11 3.33 7.36 -52.49 -0.39 2.94 16 19 C 0.04 0.91 4.75 -17.47 -0.08 0.83 16 20 N -0.87 -21.92 9.32 55.50 0.52 -21.40 16 21 Si 0.92 19.97 29.66 -169.99 -5.04 14.93 16 22 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 23 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 25 C 0.14 2.84 4.81 -5.19 -0.02 2.82 16 26 C 0.49 10.41 4.03 36.01 0.14 10.55 16 27 O -0.50 -12.50 16.41 -18.75 -0.31 -12.81 16 28 O -0.53 -9.09 13.42 -39.25 -0.53 -9.62 16 29 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 30 H 0.07 1.31 3.75 -51.93 -0.19 1.11 16 31 H 0.06 0.94 7.76 -51.93 -0.40 0.54 16 32 H 0.13 1.83 8.06 -52.49 -0.42 1.41 16 33 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 34 H 0.13 1.72 5.73 -52.49 -0.30 1.41 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.27 6.55 8.31 -40.82 -0.34 6.22 16 42 H 0.13 2.76 6.34 -51.93 -0.33 2.43 16 43 H 0.08 1.30 5.77 -51.93 -0.30 1.00 16 44 H 0.39 5.11 9.10 45.56 0.41 5.52 16 LS Contribution 358.63 15.07 5.40 5.40 Total: -1.00 -34.12 358.63 -8.57 -42.69 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -4.67 Total: 9.85 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: -3.10 Total: 3.81 kcal Atomic # 7 Polarization: -32.46 SS G_CDS: 0.27 Total: -32.19 kcal Atomic # 8 Polarization: -43.06 SS G_CDS: -1.42 Total: -44.48 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.04 Total: 14.93 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.12 -8.57 -42.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736703197.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.101 kcal (2) G-P(sol) polarization free energy of solvation -34.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds