Wall clock time and date at job start Tue Mar 31 2020 18:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.47208 * 2 1 4 4 O 1.42901 * 109.46876 * 240.00452 * 2 1 3 5 5 C 1.35901 * 117.00108 * 92.05752 * 4 2 1 6 6 C 1.38755 * 120.08830 * 174.59790 * 5 4 2 7 7 C 1.38005 * 119.87262 * 179.97438 * 6 5 4 8 8 C 1.38541 * 120.29528 * 359.97438 * 7 6 5 9 9 C 1.38260 * 119.93730 * 0.02562 * 8 7 6 10 10 C 1.38416 * 119.90525 * 359.97438 * 9 8 7 11 11 C 1.51379 * 109.75937 * 180.02562 * 9 8 7 12 12 C 1.54337 * 105.17061 * 342.79769 * 11 9 8 13 13 C 1.51694 * 130.24696 * 179.80514 * 8 7 6 14 14 C 1.50691 * 109.47497 * 120.00113 * 2 1 3 15 15 O 1.21291 * 120.00297 * 105.38610 * 14 2 1 16 16 N 1.34776 * 120.00111 * 285.39596 * 14 2 1 17 17 C 1.37099 * 120.00122 * 185.70677 * 16 14 2 18 18 H 1.08000 * 119.99789 * 2.98049 * 17 16 14 19 19 C 1.38954 * 120.00133 * 182.99067 * 17 16 14 20 20 N 1.31412 * 119.99816 * 33.03619 * 19 17 16 21 21 Si 1.86803 * 119.99872 * 213.04465 * 19 17 16 22 22 H 1.48495 * 109.47149 * 94.99593 * 21 19 17 23 23 H 1.48495 * 109.46959 * 214.99540 * 21 19 17 24 24 H 1.48499 * 109.46906 * 334.99390 * 21 19 17 25 25 C 1.46503 * 119.99836 * 5.69756 * 16 14 2 26 26 C 1.50704 * 109.46896 * 92.22076 * 25 16 14 27 27 O 1.20826 * 119.99915 * 359.97438 * 26 25 16 28 28 O 1.34227 * 120.00006 * 179.97438 * 26 25 16 29 29 H 1.08998 * 109.46726 * 180.17498 * 1 2 3 30 30 H 1.09002 * 109.46675 * 300.17290 * 1 2 3 31 31 H 1.08999 * 109.47169 * 60.16678 * 1 2 3 32 32 H 1.07997 * 120.06146 * 359.95818 * 6 5 4 33 33 H 1.07997 * 119.85091 * 179.97438 * 7 6 5 34 34 H 1.07998 * 119.91270 * 179.97438 * 10 9 8 35 35 H 1.09000 * 110.30602 * 223.87037 * 11 9 8 36 36 H 1.09003 * 110.30450 * 101.72166 * 11 9 8 37 37 H 1.08998 * 110.82266 * 144.58972 * 12 11 9 38 38 H 1.08994 * 110.82269 * 267.94592 * 12 11 9 39 39 H 1.08996 * 110.25768 * 78.29170 * 13 8 7 40 40 H 1.09003 * 110.49420 * 316.04143 * 13 8 7 41 41 H 0.97006 * 119.99391 * 179.97438 * 20 19 17 42 42 H 1.09000 * 109.46906 * 212.21310 * 25 16 14 43 43 H 1.08991 * 109.47448 * 332.21696 * 25 16 14 44 44 H 0.96700 * 117.00157 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1669 5 6 2.2530 0.0909 -2.2631 6 6 2.8223 -0.4774 -3.3937 7 6 3.0703 0.3029 -4.5046 8 6 2.7529 1.6514 -4.4964 9 6 2.1856 2.2200 -3.3710 10 6 1.9356 1.4400 -2.2552 11 6 1.9350 3.6932 -3.6128 12 6 2.8056 4.0557 -4.8346 13 6 2.9280 2.7060 -5.5727 14 6 2.0325 -0.7104 1.2303 15 8 2.4974 -1.8269 1.1387 16 7 1.9650 -0.1052 2.4327 17 6 2.5270 -0.7006 3.5324 18 1 3.0653 -1.6309 3.4267 19 6 2.4037 -0.1074 4.7828 20 7 1.3196 0.5716 5.0839 21 14 3.7791 -0.2748 6.0357 22 1 4.6703 0.9102 5.9537 23 1 3.1983 -0.3639 7.3994 24 1 4.5621 -1.5038 5.7499 25 6 1.2913 1.1891 2.5645 26 6 -0.1540 0.9681 2.9296 27 8 -0.5780 -0.1552 3.0652 28 8 -0.9704 2.0192 3.1040 29 1 -0.3633 -1.0277 0.0031 30 1 -0.3633 0.5165 0.8885 31 1 -0.3633 0.5112 -0.8915 32 1 3.0711 -1.5283 -3.4041 33 1 3.5138 -0.1397 -5.3842 34 1 1.4928 1.8840 -1.3760 35 1 2.2407 4.2764 -2.7442 36 1 0.8818 3.8664 -3.8341 37 1 2.3065 4.7958 -5.4600 38 1 3.7853 4.4145 -4.5195 39 1 2.1428 2.6135 -6.3229 40 1 3.9095 2.6168 -6.0383 41 1 1.2334 0.9854 5.9571 42 1 1.7778 1.7740 3.3451 43 1 1.3490 1.7268 1.6182 44 1 -1.8892 1.8276 3.3371 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736703197.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:17 Heat of formation + Delta-G solvation = -137.610466 kcal Electronic energy + Delta-G solvation = -29375.834039 eV Core-core repulsion = 25258.431794 eV Total energy + Delta-G solvation = -4117.402244 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.93020 -41.18026 -40.21861 -39.19601 -37.09122 -36.41188 -35.85682 -34.19023 -32.61185 -32.17016 -29.62800 -29.30265 -27.96384 -27.35504 -25.31332 -23.60794 -22.89302 -21.99246 -21.69933 -20.82971 -19.12912 -19.08053 -18.68617 -17.95962 -17.45854 -17.27589 -16.73625 -16.48706 -16.43386 -16.18351 -16.07054 -15.89005 -15.13037 -14.96982 -14.81883 -14.41382 -14.00452 -13.93750 -13.73290 -13.63593 -13.49351 -13.41348 -13.25667 -12.81397 -12.76112 -12.67230 -12.41961 -12.34038 -12.20921 -12.17197 -12.10193 -11.96094 -11.57386 -11.54987 -11.35628 -10.96121 -10.46961 -10.07414 -9.78051 -8.94713 -8.59495 -5.94610 0.36262 0.43826 1.28252 1.41294 1.52488 1.57655 1.72644 1.83303 2.31460 2.45238 2.74876 2.86593 3.00202 3.42131 3.51956 3.58410 3.69657 3.85437 4.01162 4.11983 4.23629 4.24645 4.28073 4.38748 4.44034 4.51195 4.61908 4.65040 4.78902 4.81815 4.92903 4.94814 4.99993 5.04242 5.13072 5.25959 5.37143 5.38152 5.41690 5.47652 5.69247 5.78344 5.90409 5.92280 6.25868 6.45494 6.99680 7.18025 7.38867 7.78339 8.48525 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.015720 B = 0.003311 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.774115 B = 8455.343566 C = 8874.848601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.086 3.914 3 H 0.113 0.887 4 O -0.311 6.311 5 C 0.104 3.896 6 C -0.170 4.170 7 C -0.067 4.067 8 C -0.147 4.147 9 C -0.066 4.066 10 C -0.209 4.209 11 C -0.085 4.085 12 C -0.116 4.116 13 C -0.073 4.073 14 C 0.436 3.564 15 O -0.613 6.613 16 N -0.429 5.429 17 C -0.357 4.357 18 H 0.077 0.923 19 C 0.015 3.985 20 N -0.871 5.871 21 Si 0.986 3.014 22 H -0.256 1.256 23 H -0.277 1.277 24 H -0.280 1.280 25 C 0.130 3.870 26 C 0.499 3.501 27 O -0.542 6.542 28 O -0.516 6.516 29 H 0.049 0.951 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.127 0.873 33 H 0.152 0.848 34 H 0.135 0.865 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.281 0.719 42 H 0.124 0.876 43 H 0.121 0.879 44 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.013 14.626 -16.872 22.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.026 3.974 3 H 0.131 0.869 4 O -0.224 6.224 5 C 0.059 3.941 6 C -0.189 4.189 7 C -0.085 4.085 8 C -0.147 4.147 9 C -0.066 4.066 10 C -0.228 4.228 11 C -0.122 4.122 12 C -0.153 4.153 13 C -0.110 4.110 14 C 0.226 3.774 15 O -0.499 6.499 16 N -0.148 5.148 17 C -0.483 4.483 18 H 0.095 0.905 19 C -0.189 4.189 20 N -0.508 5.508 21 Si 0.809 3.191 22 H -0.180 1.180 23 H -0.202 1.202 24 H -0.205 1.205 25 C 0.004 3.996 26 C 0.341 3.659 27 O -0.431 6.431 28 O -0.328 6.328 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.118 0.882 32 H 0.145 0.855 33 H 0.169 0.831 34 H 0.153 0.847 35 H 0.101 0.899 36 H 0.112 0.888 37 H 0.116 0.884 38 H 0.092 0.908 39 H 0.107 0.893 40 H 0.103 0.897 41 H 0.091 0.909 42 H 0.142 0.858 43 H 0.139 0.861 44 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -0.572 13.765 -16.777 21.709 hybrid contribution -0.384 -1.046 1.623 1.969 sum -0.956 12.719 -15.154 19.807 Atomic orbital electron populations 1.22251 0.91985 1.03250 1.04023 1.22101 0.95967 0.96657 0.82665 0.86922 1.86211 1.80876 1.36145 1.19213 1.19344 0.96546 0.90774 0.87409 1.20539 1.04650 1.01322 0.92403 1.20656 0.97926 0.92619 0.97275 1.21025 1.01700 0.94552 0.97430 1.20755 0.95870 0.97480 0.92529 1.20838 1.08524 0.92421 1.00983 1.21203 1.01767 0.89315 0.99876 1.22320 1.00374 0.96838 0.95792 1.21100 1.03223 0.91228 0.95469 1.20438 0.84826 0.86864 0.85284 1.90504 1.51546 1.21321 1.86482 1.43625 1.46969 1.17725 1.06512 1.19569 1.31936 1.10166 0.86675 0.90499 1.25867 0.98131 0.96338 0.98608 1.69989 1.22850 1.34258 1.23690 0.85060 0.78418 0.79168 0.76467 1.18023 1.20213 1.20537 1.21101 0.87109 0.86935 1.04420 1.23492 0.88946 0.82067 0.71388 1.90652 1.76883 1.27024 1.48567 1.84437 1.26774 1.39003 1.82599 0.93191 0.90976 0.88188 0.85489 0.83078 0.84690 0.89899 0.88800 0.88365 0.90767 0.89265 0.89739 0.90879 0.85783 0.86133 0.72465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.56 9.15 71.98 0.66 -4.90 16 2 C 0.09 3.41 1.78 29.85 0.05 3.47 16 3 H 0.11 3.73 4.52 -2.39 -0.01 3.72 16 4 O -0.31 -12.99 9.35 -73.81 -0.69 -13.68 16 5 C 0.10 3.51 6.67 22.48 0.15 3.66 16 6 C -0.17 -5.07 9.99 22.34 0.22 -4.85 16 7 C -0.07 -1.54 10.03 22.29 0.22 -1.31 16 8 C -0.15 -3.09 6.15 -19.47 -0.12 -3.21 16 9 C -0.07 -1.50 6.13 -19.60 -0.12 -1.62 16 10 C -0.21 -5.80 8.67 22.40 0.19 -5.61 16 11 C -0.08 -1.28 6.77 30.52 0.21 -1.07 16 12 C -0.12 -1.30 7.07 31.49 0.22 -1.08 16 13 C -0.07 -0.98 6.79 30.61 0.21 -0.77 16 14 C 0.44 22.84 6.95 87.65 0.61 23.45 16 15 O -0.61 -38.20 16.16 15.55 0.25 -37.95 16 16 N -0.43 -22.10 2.12 -639.61 -1.35 -23.46 16 17 C -0.36 -20.40 9.37 84.04 0.79 -19.62 16 18 H 0.08 4.86 7.36 -2.91 -0.02 4.84 16 19 C 0.01 0.76 4.75 84.93 0.40 1.17 16 20 N -0.87 -43.64 9.32 21.66 0.20 -43.44 16 21 Si 0.99 41.17 29.66 68.60 2.03 43.20 16 22 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 23 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 24 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 25 C 0.13 5.37 4.81 85.63 0.41 5.78 16 26 C 0.50 20.82 4.03 71.24 0.29 21.10 16 27 O -0.54 -27.67 16.41 21.96 0.36 -27.31 16 28 O -0.52 -16.27 13.42 -51.39 -0.69 -16.96 16 29 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.07 2.53 3.75 -2.39 -0.01 2.52 16 31 H 0.10 2.77 7.76 -2.39 -0.02 2.75 16 32 H 0.13 3.74 8.06 -2.91 -0.02 3.72 16 33 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 34 H 0.14 3.38 5.73 -2.91 -0.02 3.36 16 35 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.28 13.08 8.31 -92.70 -0.77 12.31 16 42 H 0.12 5.23 6.34 -2.39 -0.02 5.22 16 43 H 0.12 3.83 5.77 -2.39 -0.01 3.82 16 44 H 0.42 9.67 9.10 -74.06 -0.67 9.00 16 Total: -1.00 -79.68 358.63 4.90 -74.78 By element: Atomic # 1 Polarization: 29.82 SS G_CDS: 0.39 Total: 30.21 kcal Atomic # 6 Polarization: 10.20 SS G_CDS: 4.40 Total: 14.60 kcal Atomic # 7 Polarization: -65.74 SS G_CDS: -1.15 Total: -66.90 kcal Atomic # 8 Polarization: -95.12 SS G_CDS: -0.77 Total: -95.89 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.20 kcal Total: -79.68 4.90 -74.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736703197.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.829 kcal (2) G-P(sol) polarization free energy of solvation -79.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds