Wall clock time and date at job start Tue Mar 31 2020 18:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47205 * 2 1 4 4 N 1.46492 * 109.47502 * 240.00095 * 2 1 3 5 5 S 1.65606 * 120.00160 * 94.99724 * 4 2 1 6 6 O 1.42100 * 104.27398 * 181.07081 * 5 4 2 7 7 O 1.42095 * 104.27434 * 308.92966 * 5 4 2 8 8 C 1.81394 * 104.44892 * 65.00198 * 5 4 2 9 9 C 1.53004 * 109.47343 * 180.02562 * 8 5 4 10 10 C 1.52994 * 109.47247 * 179.97438 * 9 8 5 11 11 C 1.50706 * 109.47111 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99788 * 0.02562 * 11 10 9 13 13 C 1.37869 * 120.00041 * 179.97438 * 11 10 9 14 14 N 1.31518 * 120.00268 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99918 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47172 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.47219 * 120.00240 * 15 13 11 18 18 H 1.48505 * 109.47400 * 240.00150 * 15 13 11 19 19 C 1.50704 * 109.47353 * 119.99566 * 2 1 3 20 20 O 1.20827 * 119.99988 * 120.00232 * 19 2 1 21 21 O 1.34222 * 120.00240 * 300.00810 * 19 2 1 22 22 C 1.45200 * 117.00452 * 179.97438 * 21 19 2 23 23 C 1.55238 * 110.57916 * 264.87397 * 22 21 19 24 24 C 1.54894 * 102.58338 * 203.33328 * 23 22 21 25 25 C 1.54266 * 104.31305 * 37.93170 * 24 23 22 26 26 C 1.53869 * 106.60031 * 336.32486 * 25 24 23 27 27 H 1.08994 * 109.47458 * 299.99845 * 1 2 3 28 28 H 1.08996 * 109.46986 * 60.00272 * 1 2 3 29 29 H 1.09004 * 109.46713 * 180.02562 * 1 2 3 30 30 H 0.96998 * 120.00294 * 274.99436 * 4 2 1 31 31 H 1.09001 * 109.47492 * 300.00029 * 8 5 4 32 32 H 1.09002 * 109.47401 * 60.00324 * 8 5 4 33 33 H 1.09001 * 109.46803 * 300.00393 * 9 8 5 34 34 H 1.09002 * 109.46654 * 59.99810 * 9 8 5 35 35 H 1.09001 * 109.47622 * 299.99992 * 10 9 8 36 36 H 1.09002 * 109.47367 * 60.00347 * 10 9 8 37 37 H 0.97000 * 120.00053 * 179.97438 * 14 13 11 38 38 H 1.09006 * 110.43332 * 27.45610 * 22 21 19 39 39 H 1.08996 * 110.89448 * 85.04892 * 23 22 21 40 40 H 1.08993 * 110.76342 * 321.56558 * 23 22 21 41 41 H 1.09002 * 110.48891 * 279.18596 * 24 23 22 42 42 H 1.08998 * 110.48494 * 156.67683 * 24 23 22 43 43 H 1.09001 * 110.03084 * 95.60669 * 25 24 23 44 44 H 1.08996 * 110.03108 * 216.98559 * 25 24 23 45 45 H 1.08999 * 110.04012 * 119.28327 * 26 25 24 46 46 H 1.09006 * 110.02998 * 240.67078 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1961 5 16 2.4122 0.1773 -2.5505 6 8 2.8124 -0.8075 -3.4935 7 8 1.2751 0.9966 -2.7846 8 6 3.8313 1.1874 -2.0440 9 6 4.2934 2.0455 -3.2235 10 6 5.4898 2.8979 -2.7961 11 6 5.9454 3.7426 -3.9581 12 1 5.4325 3.6782 -4.9063 13 6 7.0162 4.5984 -3.8102 14 7 7.6405 4.6772 -2.6553 15 14 7.5804 5.6460 -5.2502 16 1 6.7180 5.3739 -6.4282 17 1 7.4816 7.0822 -4.8862 18 1 8.9898 5.3150 -5.5810 19 6 2.0324 -0.7103 1.2305 20 8 2.7271 -1.6927 1.1197 21 8 1.7080 -0.2518 2.4496 22 6 2.2268 -0.9862 3.5897 23 6 1.1807 -2.0143 4.0983 24 6 1.6076 -2.2293 5.5717 25 6 2.0489 -0.8303 6.0489 26 6 2.4425 -0.0399 4.7888 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 2.1111 -1.6561 -1.1948 31 1 3.5399 1.8344 -1.2166 32 1 4.6459 0.5364 -1.7268 33 1 4.5846 1.3988 -4.0512 34 1 3.4786 2.6965 -3.5403 35 1 5.1982 3.5446 -1.9686 36 1 6.3048 2.2472 -2.4790 37 1 8.3941 5.2790 -2.5514 38 1 3.1582 -1.4880 3.3274 39 1 1.2470 -2.9463 3.5371 40 1 0.1740 -1.6002 4.0443 41 1 2.4390 -2.9319 5.6294 42 1 0.7656 -2.5866 6.1645 43 1 1.2244 -0.3327 6.5594 44 1 2.9045 -0.9170 6.7187 45 1 1.8091 0.8414 4.6876 46 1 3.4896 0.2578 4.8467 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751975251.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:34 Heat of formation + Delta-G solvation = -210.224759 kcal Electronic energy + Delta-G solvation = -26857.827698 eV Core-core repulsion = 22872.720613 eV Total energy + Delta-G solvation = -3985.107085 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.84441 -39.10883 -38.27227 -37.17015 -36.97584 -36.60897 -36.48097 -34.17637 -31.25198 -29.73675 -29.68666 -29.06369 -25.79805 -25.63159 -22.58473 -22.46286 -21.50704 -21.25497 -20.57660 -19.45776 -18.61942 -18.39886 -18.13057 -17.28143 -17.10908 -16.87128 -16.48649 -16.43418 -16.27296 -15.69296 -15.30328 -14.61402 -14.51486 -14.34871 -14.10337 -14.07147 -13.61466 -13.57989 -13.45096 -13.26698 -13.19999 -13.10924 -13.00976 -12.88884 -12.79584 -12.71824 -12.60182 -12.18506 -12.16920 -12.09891 -11.79520 -11.76655 -11.62403 -11.42613 -11.38154 -11.26789 -11.18825 -10.66624 -10.58281 -8.22981 -6.33844 -0.85081 0.99408 1.27742 1.39784 1.40632 1.53797 1.79967 2.39715 2.68513 3.10796 3.14374 3.32528 3.49483 3.54890 3.69063 3.72296 3.88177 3.90796 3.93901 4.15119 4.29792 4.38721 4.44235 4.46788 4.51835 4.64193 4.68468 4.79477 4.84207 4.89848 4.94220 4.97459 5.01591 5.06762 5.17285 5.19854 5.28439 5.40857 5.45696 5.47711 5.62344 5.79343 5.83560 6.19232 6.57893 6.82293 7.35692 8.88769 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.013279 B = 0.002594 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.018276 B =10792.803726 C =12362.790998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.154 3.846 3 H 0.143 0.857 4 N -1.101 6.101 5 S 2.637 3.363 6 O -0.985 6.985 7 O -0.968 6.968 8 C -0.616 4.616 9 C -0.105 4.105 10 C 0.029 3.971 11 C -0.550 4.550 12 H 0.062 0.938 13 C 0.001 3.999 14 N -0.931 5.931 15 Si 0.963 3.037 16 H -0.263 1.263 17 H -0.276 1.276 18 H -0.278 1.278 19 C 0.463 3.537 20 O -0.523 6.523 21 O -0.341 6.341 22 C 0.069 3.931 23 C -0.137 4.137 24 C -0.121 4.121 25 C -0.119 4.119 26 C -0.123 4.123 27 H 0.101 0.899 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.428 0.572 31 H 0.149 0.851 32 H 0.140 0.860 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.006 0.994 36 H -0.001 1.001 37 H 0.265 0.735 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.086 0.914 41 H 0.069 0.931 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.085 0.915 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.482 -12.457 18.152 27.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.045 3.955 3 H 0.160 0.840 4 N -0.861 5.861 5 S 2.731 3.269 6 O -0.976 6.976 7 O -0.958 6.958 8 C -0.747 4.747 9 C -0.144 4.144 10 C -0.009 4.009 11 C -0.588 4.588 12 H 0.080 0.920 13 C -0.197 4.197 14 N -0.571 5.571 15 Si 0.788 3.212 16 H -0.187 1.187 17 H -0.202 1.202 18 H -0.204 1.204 19 C 0.304 3.696 20 O -0.412 6.412 21 O -0.257 6.257 22 C 0.014 3.986 23 C -0.175 4.175 24 C -0.158 4.158 25 C -0.156 4.156 26 C -0.160 4.160 27 H 0.120 0.880 28 H 0.104 0.896 29 H 0.090 0.910 30 H 0.265 0.735 31 H 0.167 0.833 32 H 0.158 0.842 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.024 0.976 36 H 0.017 0.983 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.105 0.895 41 H 0.088 0.912 42 H 0.105 0.895 43 H 0.100 0.900 44 H 0.096 0.904 45 H 0.104 0.896 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.626 -12.559 17.435 27.168 hybrid contribution 1.497 0.150 -0.148 1.512 sum -15.129 -12.409 17.286 26.109 Atomic orbital electron populations 1.22301 0.89826 1.04457 1.05718 1.20549 0.98144 0.96865 0.79936 0.83987 1.55536 1.81962 1.20503 1.28130 1.04239 0.75874 0.74076 0.72691 1.93555 1.84828 1.59149 1.60045 1.93561 1.47645 1.70781 1.83834 1.30578 1.19911 1.14337 1.09875 1.21316 1.00325 0.97902 0.94896 1.18981 0.92272 0.93799 0.95858 1.21770 1.14969 1.23337 0.98693 0.91999 1.25944 0.96572 0.98444 0.98715 1.70081 1.22367 1.38962 1.25679 0.85422 0.78167 0.78321 0.79306 1.18680 1.20167 1.20412 1.23980 0.76823 0.82882 0.85888 1.90660 1.36321 1.26953 1.87243 1.86543 1.69122 1.55437 1.14576 1.24081 0.97893 0.93498 0.83112 1.22949 0.99227 0.97940 0.97378 1.22292 1.01941 0.97472 0.94130 1.22098 1.02288 0.95039 0.96201 1.22268 1.02871 0.98784 0.92108 0.88045 0.89602 0.91010 0.73509 0.83294 0.84182 0.91592 0.90742 0.97590 0.98254 0.92667 0.90448 0.91689 0.89539 0.91245 0.89522 0.90045 0.90441 0.89642 0.90694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 9.45 71.98 0.68 -1.75 16 2 C 0.15 2.80 3.19 44.25 0.14 2.94 16 3 H 0.14 2.03 7.15 -2.39 -0.02 2.02 16 4 N -1.10 -23.49 5.15 -172.53 -0.89 -24.38 16 5 S 2.64 72.13 5.38 -56.49 -0.30 71.83 16 6 O -0.99 -33.72 18.08 -127.65 -2.31 -36.03 16 7 O -0.97 -29.67 17.11 -127.65 -2.18 -31.85 16 8 C -0.62 -18.11 5.96 71.98 0.43 -17.68 16 9 C -0.11 -4.18 5.16 30.59 0.16 -4.02 16 10 C 0.03 1.49 4.97 29.85 0.15 1.64 16 11 C -0.55 -31.06 9.11 25.60 0.23 -30.83 16 12 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16 13 C 0.00 0.08 5.46 84.65 0.46 0.54 16 14 N -0.93 -55.78 13.29 21.44 0.28 -55.50 16 15 Si 0.96 44.08 29.54 68.60 2.03 46.11 16 16 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 17 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 18 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 19 C 0.46 9.60 7.32 71.24 0.52 10.12 16 20 O -0.52 -13.62 15.20 21.96 0.33 -13.29 16 21 O -0.34 -6.26 9.86 -51.34 -0.51 -6.77 16 22 C 0.07 1.14 3.23 31.79 0.10 1.24 16 23 C -0.14 -1.80 6.66 32.01 0.21 -1.59 16 24 C -0.12 -1.15 6.82 31.67 0.22 -0.93 16 25 C -0.12 -1.06 6.80 31.32 0.21 -0.85 16 26 C -0.12 -1.54 6.57 31.32 0.21 -1.33 16 27 H 0.10 1.10 8.11 -2.39 -0.02 1.08 16 28 H 0.09 1.44 7.42 -2.39 -0.02 1.43 16 29 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.43 8.72 8.18 -96.75 -0.79 7.93 16 31 H 0.15 3.62 7.44 -2.39 -0.02 3.60 16 32 H 0.14 3.88 8.14 -2.39 -0.02 3.86 16 33 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 34 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 35 H 0.01 0.30 8.14 -2.39 -0.02 0.29 16 36 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 37 H 0.26 14.84 8.31 -92.71 -0.77 14.06 16 38 H 0.08 1.53 7.14 -2.38 -0.02 1.52 16 39 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.08 1.03 8.07 -2.39 -0.02 1.01 16 46 H 0.07 0.94 8.14 -2.38 -0.02 0.93 16 Total: -1.00 -75.20 391.03 0.35 -74.84 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 0.18 Total: 17.52 kcal Atomic # 6 Polarization: -46.22 SS G_CDS: 3.72 Total: -42.50 kcal Atomic # 7 Polarization: -79.27 SS G_CDS: -0.60 Total: -79.88 kcal Atomic # 8 Polarization: -83.27 SS G_CDS: -4.66 Total: -87.93 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 16 Polarization: 72.13 SS G_CDS: -0.30 Total: 71.83 kcal Total: -75.20 0.35 -74.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751975251.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.381 kcal (2) G-P(sol) polarization free energy of solvation -75.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds