Wall clock time and date at job start Tue Mar 31 2020 18:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46928 * 2 1 4 4 O 1.42901 * 109.46974 * 240.00601 * 2 1 3 5 5 C 1.34906 * 117.00470 * 89.99624 * 4 2 1 6 6 O 1.21622 * 119.99725 * 0.02562 * 5 4 2 7 7 C 1.46235 * 120.00259 * 180.02562 * 5 4 2 8 8 C 1.34913 * 120.00098 * 173.17442 * 7 5 4 9 9 C 1.47185 * 119.99773 * 345.61806 * 8 7 5 10 10 C 1.39881 * 120.14450 * 131.37497 * 9 8 7 11 11 C 1.37892 * 119.93880 * 179.97438 * 10 9 8 12 12 C 1.38333 * 120.23311 * 359.97438 * 11 10 9 13 13 C 1.38867 * 120.29331 * 0.02562 * 12 11 10 14 14 O 1.35905 * 119.96986 * 180.02562 * 13 12 11 15 15 C 1.38420 * 120.05634 * 359.77892 * 13 12 11 16 16 C 1.50694 * 109.47347 * 120.00148 * 2 1 3 17 17 O 1.21283 * 119.99989 * 105.50515 * 16 2 1 18 18 N 1.34781 * 120.00262 * 285.50252 * 16 2 1 19 19 C 1.46491 * 119.99657 * 4.68081 * 18 16 2 20 20 C 1.46500 * 119.99914 * 184.95102 * 18 16 2 21 21 C 1.50701 * 109.47213 * 269.72521 * 20 18 16 22 22 H 1.07994 * 119.99613 * 0.02562 * 21 20 18 23 23 C 1.37871 * 119.99673 * 180.02562 * 21 20 18 24 24 N 1.31514 * 119.99839 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 120.00242 * 0.02562 * 23 21 20 26 26 H 1.48504 * 109.47077 * 90.00304 * 25 23 21 27 27 H 1.48504 * 109.47249 * 209.99753 * 25 23 21 28 28 H 1.48488 * 109.47216 * 330.00041 * 25 23 21 29 29 H 1.08999 * 109.47215 * 53.49940 * 1 2 3 30 30 H 1.09002 * 109.47316 * 173.50210 * 1 2 3 31 31 H 1.09004 * 109.46900 * 293.50058 * 1 2 3 32 32 H 1.08000 * 119.99676 * 353.16762 * 7 5 4 33 33 H 1.07999 * 119.99719 * 165.62129 * 8 7 5 34 34 H 1.08006 * 120.03455 * 359.95381 * 10 9 8 35 35 H 1.07997 * 119.88433 * 179.97438 * 11 10 9 36 36 H 1.07994 * 119.85270 * 180.02562 * 12 11 10 37 37 H 0.96700 * 114.00246 * 89.99608 * 14 13 12 38 38 H 1.07996 * 120.11377 * 180.23319 * 15 13 12 39 39 H 1.08999 * 109.47438 * 268.42361 * 19 18 16 40 40 H 1.09006 * 109.47451 * 28.42039 * 19 18 16 41 41 H 1.08999 * 109.47514 * 148.42505 * 19 18 16 42 42 H 1.08999 * 109.47005 * 29.72691 * 20 18 16 43 43 H 1.09004 * 109.46798 * 149.72515 * 20 18 16 44 44 H 0.97005 * 119.99988 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 2.2104 0.0788 -2.2680 6 8 1.9900 1.2744 -2.2369 7 6 2.6966 -0.5434 -3.4988 8 6 2.7699 0.1785 -4.6362 9 6 2.0788 1.4745 -4.7310 10 6 2.7578 2.5992 -5.2114 11 6 2.1060 3.8112 -5.2990 12 6 0.7818 3.9194 -4.9138 13 6 0.0985 2.8091 -4.4355 14 8 -1.2025 2.9228 -4.0594 15 6 0.7398 1.5857 -4.3463 16 6 2.0324 -0.7104 1.2304 17 8 2.4993 -1.8260 1.1383 18 7 1.9629 -0.1061 2.4331 19 6 1.3068 1.1974 2.5610 20 6 2.5489 -0.7500 3.6113 21 6 1.5127 -1.6191 4.2763 22 1 0.5174 -1.6854 3.8623 23 6 1.8354 -2.3294 5.4130 24 7 0.9313 -3.0883 5.9930 25 14 3.5567 -2.2141 6.1293 26 1 3.6111 -1.1003 7.1101 27 1 3.8963 -3.4897 6.8096 28 1 4.5311 -1.9605 5.0379 29 1 -0.3633 0.6113 -0.8261 30 1 -0.3634 -1.0211 -0.1163 31 1 -0.3633 0.4098 0.9425 32 1 2.9971 -1.5808 -3.4973 33 1 3.3357 -0.1947 -5.4771 34 1 3.7917 2.5185 -5.5131 35 1 2.6312 4.6790 -5.6696 36 1 0.2773 4.8715 -4.9853 37 1 -1.8341 2.7584 -4.7729 38 1 0.2082 0.7208 -3.9781 39 1 2.0450 1.9896 2.4366 40 1 0.5377 1.2939 1.7945 41 1 0.8493 1.2788 3.5470 42 1 3.3963 -1.3639 3.3062 43 1 2.8868 0.0133 4.3122 44 1 1.1584 -3.5883 6.7926 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753465926.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:09 Heat of formation + Delta-G solvation = -94.063759 kcal Electronic energy + Delta-G solvation = -28370.516976 eV Core-core repulsion = 24255.003059 eV Total energy + Delta-G solvation = -4115.513917 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.88660 -39.88463 -38.95957 -37.29711 -36.37946 -34.97641 -34.06067 -32.76770 -31.68120 -30.34128 -29.78623 -28.30618 -26.28816 -25.41168 -23.99259 -22.83186 -22.53268 -21.59354 -19.87369 -18.86181 -18.72393 -17.57195 -16.94995 -16.75173 -16.60163 -16.03087 -15.98757 -15.73620 -15.39644 -15.01858 -14.60586 -14.34457 -14.16387 -14.00239 -13.56411 -13.37938 -13.10215 -12.76117 -12.61277 -12.42632 -12.31731 -12.21528 -12.13904 -11.90506 -11.77707 -11.53512 -11.32119 -10.89618 -10.83886 -10.61918 -10.53297 -10.50414 -10.20223 -10.10624 -9.54208 -8.96888 -8.89942 -8.62576 -8.58956 -7.75942 -6.08209 -4.07104 0.31681 1.06714 1.37822 2.56191 2.82494 3.20547 3.27511 3.35887 3.39358 3.40063 3.84438 3.90837 4.33957 4.40163 4.60871 4.70013 4.78826 4.82393 4.92961 5.00644 5.08578 5.13398 5.24299 5.25163 5.40782 5.47367 5.57095 5.68119 5.72188 5.75517 5.83328 5.87442 6.07827 6.10200 6.16698 6.20581 6.29660 6.44686 6.52256 6.64328 6.93041 7.27013 7.41029 7.59790 7.76321 8.14721 8.46094 8.85903 8.95844 9.51531 11.05155 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.022472 B = 0.002530 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.714187 B =11064.585296 C =11482.443223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.073 3.927 3 H 0.101 0.899 4 O -0.319 6.319 5 C 0.483 3.517 6 O -0.494 6.494 7 C -0.174 4.174 8 C -0.022 4.022 9 C -0.051 4.051 10 C -0.108 4.108 11 C -0.109 4.109 12 C -0.138 4.138 13 C 0.104 3.896 14 O -0.497 6.497 15 C -0.093 4.093 16 C 0.510 3.490 17 O -0.517 6.517 18 N -0.592 5.592 19 C 0.067 3.933 20 C 0.217 3.783 21 C -0.528 4.528 22 H 0.075 0.925 23 C 0.072 3.928 24 N -0.897 5.897 25 Si 0.875 3.125 26 H -0.275 1.275 27 H -0.283 1.283 28 H -0.264 1.264 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.387 0.613 38 H 0.121 0.879 39 H 0.048 0.952 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.041 0.959 43 H 0.029 0.971 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.547 13.726 -26.216 29.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.014 3.986 3 H 0.119 0.881 4 O -0.234 6.234 5 C 0.328 3.672 6 O -0.383 6.383 7 C -0.193 4.193 8 C -0.040 4.040 9 C -0.051 4.051 10 C -0.126 4.126 11 C -0.127 4.127 12 C -0.156 4.156 13 C 0.059 3.941 14 O -0.306 6.306 15 C -0.111 4.111 16 C 0.294 3.706 17 O -0.392 6.392 18 N -0.326 5.326 19 C -0.076 4.076 20 C 0.097 3.903 21 C -0.567 4.567 22 H 0.094 0.906 23 C -0.130 4.130 24 N -0.535 5.535 25 Si 0.701 3.299 26 H -0.201 1.201 27 H -0.209 1.209 28 H -0.189 1.189 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.108 0.892 32 H 0.169 0.831 33 H 0.168 0.832 34 H 0.144 0.856 35 H 0.144 0.856 36 H 0.144 0.856 37 H 0.242 0.758 38 H 0.139 0.861 39 H 0.066 0.934 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.059 0.941 43 H 0.047 0.953 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.934 13.478 -25.473 28.834 hybrid contribution 0.480 -0.007 0.332 0.584 sum 1.414 13.471 -25.141 28.558 Atomic orbital electron populations 1.22323 0.92332 1.04164 1.04005 1.22172 0.95997 0.97433 0.83010 0.88085 1.86320 1.76475 1.41075 1.19511 1.21516 0.74947 0.85668 0.85036 1.90952 1.47407 1.15705 1.84235 1.22425 1.05321 1.01504 0.90075 1.22525 0.92730 0.91781 0.96946 1.18781 0.93414 0.93540 0.99393 1.21195 0.99606 0.92165 0.99609 1.20879 0.94190 0.97580 1.00067 1.21483 0.95689 0.98633 0.99825 1.18258 0.85132 0.92341 0.98342 1.84893 1.13478 1.92982 1.39292 1.21392 0.94495 0.97286 0.97964 1.19842 0.80381 0.86530 0.83804 1.90703 1.44850 1.18070 1.85548 1.47732 1.56638 1.20071 1.08140 1.22001 0.97188 0.84544 1.03913 1.19715 0.95246 0.93235 0.82094 1.21309 0.98847 1.26539 1.09996 0.90649 1.24854 0.97039 0.94638 0.96483 1.69896 1.33920 1.29193 1.20512 0.86864 0.85386 0.77928 0.79679 1.20071 1.20889 1.18851 0.91145 0.90649 0.89213 0.83099 0.83240 0.85632 0.85567 0.85605 0.75773 0.86079 0.93356 0.91223 0.90068 0.94114 0.95327 0.92544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.55 9.15 37.16 0.34 -2.21 16 2 C 0.07 1.26 2.12 -27.89 -0.06 1.20 16 3 H 0.10 1.63 6.65 -51.93 -0.35 1.28 16 4 O -0.32 -5.44 9.34 -47.70 -0.45 -5.88 16 5 C 0.48 6.90 7.11 33.94 0.24 7.14 16 6 O -0.49 -7.66 12.11 -19.36 -0.23 -7.90 16 7 C -0.17 -1.77 10.02 -37.55 -0.38 -2.14 16 8 C -0.02 -0.17 9.76 -37.13 -0.36 -0.54 16 9 C -0.05 -0.50 4.20 -105.08 -0.44 -0.94 16 10 C -0.11 -0.93 9.79 -39.09 -0.38 -1.31 16 11 C -0.11 -0.91 10.02 -39.67 -0.40 -1.30 16 12 C -0.14 -1.27 9.98 -39.31 -0.39 -1.66 16 13 C 0.10 1.09 6.70 -39.28 -0.26 0.83 16 14 O -0.50 -4.84 13.50 -19.44 -0.26 -5.10 16 15 C -0.09 -1.01 6.99 -38.95 -0.27 -1.29 16 16 C 0.51 11.11 6.99 -10.99 -0.08 11.03 16 17 O -0.52 -13.51 16.19 -13.92 -0.23 -13.73 16 18 N -0.59 -12.66 2.86 -182.96 -0.52 -13.19 16 19 C 0.07 1.07 9.87 59.84 0.59 1.67 16 20 C 0.22 5.42 4.20 -5.19 -0.02 5.39 16 21 C -0.53 -15.36 9.94 -34.44 -0.34 -15.70 16 22 H 0.08 2.40 8.06 -52.49 -0.42 1.97 16 23 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 24 N -0.90 -27.86 13.96 55.43 0.77 -27.08 16 25 Si 0.87 21.69 27.47 -169.99 -4.67 17.02 16 26 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.09 1.27 5.51 -51.93 -0.29 0.99 16 32 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.15 0.64 8.06 -52.49 -0.42 0.21 16 34 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 35 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 36 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.39 1.70 9.06 45.56 0.41 2.12 16 38 H 0.12 1.35 7.67 -52.49 -0.40 0.95 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.96 4.21 -51.93 -0.22 0.75 16 41 H 0.08 1.31 8.09 -51.93 -0.42 0.89 16 42 H 0.04 1.09 6.55 -51.93 -0.34 0.75 16 43 H 0.03 0.66 7.50 -51.93 -0.39 0.27 16 44 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 374.81 15.07 5.65 5.65 Total: -1.00 -38.51 374.81 -7.21 -45.72 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -4.96 Total: 2.30 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -2.31 Total: 2.19 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: 0.25 Total: -40.27 kcal Atomic # 8 Polarization: -31.44 SS G_CDS: -1.17 Total: -32.61 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -38.51 -7.21 -45.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753465926.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.339 kcal (2) G-P(sol) polarization free energy of solvation -38.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds