Wall clock time and date at job start Tue Mar 31 2020 18:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46928 * 2 1 4 4 O 1.42901 * 109.46974 * 240.00601 * 2 1 3 5 5 C 1.34906 * 117.00470 * 89.99624 * 4 2 1 6 6 O 1.21622 * 119.99725 * 0.02562 * 5 4 2 7 7 C 1.46235 * 120.00259 * 180.02562 * 5 4 2 8 8 C 1.34913 * 120.00098 * 173.17442 * 7 5 4 9 9 C 1.47185 * 119.99773 * 345.61806 * 8 7 5 10 10 C 1.39881 * 120.14450 * 131.37497 * 9 8 7 11 11 C 1.37892 * 119.93880 * 179.97438 * 10 9 8 12 12 C 1.38333 * 120.23311 * 359.97438 * 11 10 9 13 13 C 1.38867 * 120.29331 * 0.02562 * 12 11 10 14 14 O 1.35905 * 119.96986 * 180.02562 * 13 12 11 15 15 C 1.38420 * 120.05634 * 359.77892 * 13 12 11 16 16 C 1.50694 * 109.47347 * 120.00148 * 2 1 3 17 17 O 1.21283 * 119.99989 * 105.50515 * 16 2 1 18 18 N 1.34781 * 120.00262 * 285.50252 * 16 2 1 19 19 C 1.46491 * 119.99657 * 4.68081 * 18 16 2 20 20 C 1.46500 * 119.99914 * 184.95102 * 18 16 2 21 21 C 1.50701 * 109.47213 * 269.72521 * 20 18 16 22 22 H 1.07994 * 119.99613 * 0.02562 * 21 20 18 23 23 C 1.37871 * 119.99673 * 180.02562 * 21 20 18 24 24 N 1.31514 * 119.99839 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 120.00242 * 0.02562 * 23 21 20 26 26 H 1.48504 * 109.47077 * 90.00304 * 25 23 21 27 27 H 1.48504 * 109.47249 * 209.99753 * 25 23 21 28 28 H 1.48488 * 109.47216 * 330.00041 * 25 23 21 29 29 H 1.08999 * 109.47215 * 53.49940 * 1 2 3 30 30 H 1.09002 * 109.47316 * 173.50210 * 1 2 3 31 31 H 1.09004 * 109.46900 * 293.50058 * 1 2 3 32 32 H 1.08000 * 119.99676 * 353.16762 * 7 5 4 33 33 H 1.07999 * 119.99719 * 165.62129 * 8 7 5 34 34 H 1.08006 * 120.03455 * 359.95381 * 10 9 8 35 35 H 1.07997 * 119.88433 * 179.97438 * 11 10 9 36 36 H 1.07994 * 119.85270 * 180.02562 * 12 11 10 37 37 H 0.96700 * 114.00246 * 89.99608 * 14 13 12 38 38 H 1.07996 * 120.11377 * 180.23319 * 15 13 12 39 39 H 1.08999 * 109.47438 * 268.42361 * 19 18 16 40 40 H 1.09006 * 109.47451 * 28.42039 * 19 18 16 41 41 H 1.08999 * 109.47514 * 148.42505 * 19 18 16 42 42 H 1.08999 * 109.47005 * 29.72691 * 20 18 16 43 43 H 1.09004 * 109.46798 * 149.72515 * 20 18 16 44 44 H 0.97005 * 119.99988 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 2.2104 0.0788 -2.2680 6 8 1.9900 1.2744 -2.2369 7 6 2.6966 -0.5434 -3.4988 8 6 2.7699 0.1785 -4.6362 9 6 2.0788 1.4745 -4.7310 10 6 2.7578 2.5992 -5.2114 11 6 2.1060 3.8112 -5.2990 12 6 0.7818 3.9194 -4.9138 13 6 0.0985 2.8091 -4.4355 14 8 -1.2025 2.9228 -4.0594 15 6 0.7398 1.5857 -4.3463 16 6 2.0324 -0.7104 1.2304 17 8 2.4993 -1.8260 1.1383 18 7 1.9629 -0.1061 2.4331 19 6 1.3068 1.1974 2.5610 20 6 2.5489 -0.7500 3.6113 21 6 1.5127 -1.6191 4.2763 22 1 0.5174 -1.6854 3.8623 23 6 1.8354 -2.3294 5.4130 24 7 0.9313 -3.0883 5.9930 25 14 3.5567 -2.2141 6.1293 26 1 3.6111 -1.1003 7.1101 27 1 3.8963 -3.4897 6.8096 28 1 4.5311 -1.9605 5.0379 29 1 -0.3633 0.6113 -0.8261 30 1 -0.3634 -1.0211 -0.1163 31 1 -0.3633 0.4098 0.9425 32 1 2.9971 -1.5808 -3.4973 33 1 3.3357 -0.1947 -5.4771 34 1 3.7917 2.5185 -5.5131 35 1 2.6312 4.6790 -5.6696 36 1 0.2773 4.8715 -4.9853 37 1 -1.8341 2.7584 -4.7729 38 1 0.2082 0.7208 -3.9781 39 1 2.0450 1.9896 2.4366 40 1 0.5377 1.2939 1.7945 41 1 0.8493 1.2788 3.5470 42 1 3.3963 -1.3639 3.3062 43 1 2.8868 0.0133 4.3122 44 1 1.1584 -3.5883 6.7926 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753465926.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:08 Heat of formation + Delta-G solvation = -120.876491 kcal Electronic energy + Delta-G solvation = -28371.679664 eV Core-core repulsion = 24255.003059 eV Total energy + Delta-G solvation = -4116.676605 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.05930 -40.86353 -40.28521 -38.21108 -37.38691 -36.76337 -34.88236 -34.77571 -33.18972 -31.06686 -30.53430 -30.17737 -27.77019 -26.48118 -25.45001 -24.02809 -23.38905 -22.81880 -20.81384 -20.44697 -19.59613 -19.16272 -18.57861 -18.06045 -17.48528 -17.35862 -17.15525 -16.65546 -16.57825 -16.29126 -16.00219 -15.80246 -15.11693 -15.03787 -14.71804 -14.60564 -14.38347 -14.33293 -13.81734 -13.69922 -13.66034 -13.50129 -13.31053 -13.19337 -12.94444 -12.86374 -12.57207 -12.54317 -12.28962 -12.06689 -11.88102 -11.77303 -11.67562 -11.38123 -10.91216 -10.83221 -10.69261 -9.59895 -9.53808 -9.33463 -8.34910 -6.40635 -0.42954 0.38764 0.64823 1.31686 1.32377 1.39507 1.47310 1.52725 1.88487 2.30686 2.37792 2.74455 2.98632 3.28173 3.33535 3.61671 3.69645 3.79224 3.83000 3.97671 4.15455 4.20253 4.29084 4.43680 4.47891 4.51531 4.57386 4.61821 4.71262 4.79578 4.84421 4.88694 4.90718 5.05081 5.06363 5.16250 5.32966 5.41644 5.47247 5.49057 5.51103 5.53461 5.92375 6.20089 6.45503 6.60477 6.69500 6.86729 7.12210 7.26206 8.82082 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.022472 B = 0.002530 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.714187 B =11064.585296 C =11482.443223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.085 3.915 3 H 0.117 0.883 4 O -0.341 6.341 5 C 0.479 3.521 6 O -0.511 6.511 7 C -0.203 4.203 8 C 0.014 3.986 9 C -0.071 4.071 10 C -0.110 4.110 11 C -0.110 4.110 12 C -0.147 4.147 13 C 0.088 3.912 14 O -0.514 6.514 15 C -0.113 4.113 16 C 0.501 3.499 17 O -0.573 6.573 18 N -0.598 5.598 19 C 0.060 3.940 20 C 0.224 3.776 21 C -0.538 4.538 22 H 0.029 0.971 23 C 0.011 3.989 24 N -0.944 5.944 25 Si 0.949 3.051 26 H -0.249 1.249 27 H -0.281 1.281 28 H -0.256 1.256 29 H 0.088 0.912 30 H 0.061 0.939 31 H 0.097 0.903 32 H 0.168 0.832 33 H 0.196 0.804 34 H 0.152 0.848 35 H 0.153 0.847 36 H 0.139 0.861 37 H 0.406 0.594 38 H 0.108 0.892 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.078 0.922 42 H 0.021 0.979 43 H 0.057 0.943 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.472 16.063 -27.888 32.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.026 3.974 3 H 0.134 0.866 4 O -0.258 6.258 5 C 0.326 3.674 6 O -0.402 6.402 7 C -0.222 4.222 8 C -0.003 4.003 9 C -0.071 4.071 10 C -0.128 4.128 11 C -0.128 4.128 12 C -0.166 4.166 13 C 0.044 3.956 14 O -0.327 6.327 15 C -0.131 4.131 16 C 0.288 3.712 17 O -0.452 6.452 18 N -0.330 5.330 19 C -0.081 4.081 20 C 0.102 3.898 21 C -0.576 4.576 22 H 0.048 0.952 23 C -0.187 4.187 24 N -0.584 5.584 25 Si 0.771 3.229 26 H -0.173 1.173 27 H -0.207 1.207 28 H -0.180 1.180 29 H 0.107 0.893 30 H 0.080 0.920 31 H 0.115 0.885 32 H 0.185 0.815 33 H 0.212 0.788 34 H 0.170 0.830 35 H 0.171 0.829 36 H 0.157 0.843 37 H 0.265 0.735 38 H 0.126 0.874 39 H 0.100 0.900 40 H 0.109 0.891 41 H 0.097 0.903 42 H 0.039 0.961 43 H 0.075 0.925 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.822 15.873 -27.172 31.594 hybrid contribution -0.244 -0.658 0.712 1.000 sum 2.578 15.215 -26.459 30.631 Atomic orbital electron populations 1.22280 0.90812 1.03812 1.05098 1.21973 0.96859 0.97042 0.81494 0.86571 1.86335 1.77086 1.42217 1.20122 1.22277 0.74298 0.85645 0.85150 1.90931 1.48555 1.16313 1.84354 1.22518 1.07858 1.02742 0.89082 1.23011 0.90152 0.90097 0.97086 1.19091 0.93313 0.94925 0.99762 1.21555 1.00781 0.91745 0.98715 1.21262 0.93876 0.98540 0.99127 1.21736 0.96350 0.98776 0.99689 1.18481 0.85516 0.92785 0.98866 1.84825 1.13875 1.93059 1.40909 1.21432 0.95417 0.97169 0.99111 1.20702 0.79287 0.86072 0.85169 1.90658 1.47376 1.20600 1.86563 1.47836 1.56443 1.21559 1.07188 1.22312 0.98478 0.82676 1.04667 1.19438 0.93463 0.93353 0.83544 1.21509 0.98002 1.27746 1.10369 0.95219 1.25862 1.01992 0.93956 0.96889 1.70050 1.36597 1.30420 1.21356 0.85696 0.79153 0.78774 0.79255 1.17324 1.20666 1.17985 0.89344 0.91955 0.88473 0.81478 0.78752 0.82997 0.82910 0.84299 0.73528 0.87400 0.90044 0.89070 0.90278 0.96087 0.92533 0.92192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.85 9.15 71.98 0.66 -4.19 16 2 C 0.09 2.94 2.12 29.85 0.06 3.00 16 3 H 0.12 3.61 6.65 -2.39 -0.02 3.60 16 4 O -0.34 -11.81 9.34 -51.86 -0.48 -12.30 16 5 C 0.48 13.49 7.11 69.90 0.50 13.99 16 6 O -0.51 -15.47 12.11 19.44 0.24 -15.24 16 7 C -0.20 -3.85 10.02 23.58 0.24 -3.61 16 8 C 0.01 0.19 9.76 23.86 0.23 0.42 16 9 C -0.07 -1.24 4.20 -20.16 -0.08 -1.32 16 10 C -0.11 -1.57 9.79 22.59 0.22 -1.34 16 11 C -0.11 -1.53 10.02 22.21 0.22 -1.30 16 12 C -0.15 -2.46 9.98 22.44 0.22 -2.24 16 13 C 0.09 1.78 6.70 22.46 0.15 1.93 16 14 O -0.51 -9.80 13.50 -92.48 -1.25 -11.05 16 15 C -0.11 -2.38 6.99 22.68 0.16 -2.23 16 16 C 0.50 22.27 6.99 87.65 0.61 22.88 16 17 O -0.57 -31.21 16.19 15.59 0.25 -30.95 16 18 N -0.60 -25.59 2.86 -851.14 -2.43 -28.02 16 19 C 0.06 1.83 9.87 127.77 1.26 3.09 16 20 C 0.22 11.19 4.20 85.63 0.36 11.55 16 21 C -0.54 -32.22 9.94 25.60 0.25 -31.96 16 22 H 0.03 1.98 8.06 -2.91 -0.02 1.96 16 23 C 0.01 0.66 5.47 84.65 0.46 1.13 16 24 N -0.94 -60.30 13.96 21.44 0.30 -60.00 16 25 Si 0.95 44.75 27.47 68.60 1.88 46.64 16 26 H -0.25 -10.69 7.11 99.48 0.71 -9.99 16 27 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 28 H -0.26 -11.65 6.54 99.48 0.65 -11.00 16 29 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.10 2.70 5.51 -2.39 -0.01 2.68 16 32 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 33 H 0.20 0.75 8.06 -2.91 -0.02 0.73 16 34 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 35 H 0.15 1.22 8.06 -2.91 -0.02 1.20 16 36 H 0.14 1.84 8.06 -2.91 -0.02 1.81 16 37 H 0.41 3.44 9.06 -74.06 -0.67 2.76 16 38 H 0.11 2.46 7.67 -2.91 -0.02 2.44 16 39 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.09 2.37 4.21 -2.38 -0.01 2.36 16 41 H 0.08 2.46 8.09 -2.39 -0.02 2.44 16 42 H 0.02 1.14 6.55 -2.39 -0.02 1.12 16 43 H 0.06 2.52 7.50 -2.38 -0.02 2.50 16 44 H 0.27 15.92 8.31 -92.70 -0.77 15.15 16 Total: -1.00 -88.09 374.81 4.35 -83.74 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: 0.31 Total: 17.40 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: 5.53 Total: 9.79 kcal Atomic # 7 Polarization: -85.89 SS G_CDS: -2.13 Total: -88.02 kcal Atomic # 8 Polarization: -68.29 SS G_CDS: -1.25 Total: -69.54 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.88 Total: 46.64 kcal Total: -88.09 4.35 -83.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753465926.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.137 kcal (2) G-P(sol) polarization free energy of solvation -88.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds