Wall clock time and date at job start Tue Mar 31 2020 18:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21232 * 120.00336 * 2 1 4 4 C 1.47300 * 119.99879 * 180.02562 * 2 1 3 5 5 C 1.39464 * 120.22295 * 353.85428 * 4 2 1 6 6 C 1.38187 * 119.97083 * 180.29628 * 5 4 2 7 7 C 1.38381 * 120.42606 * 359.68656 * 6 5 4 8 8 C 1.38289 * 120.45182 * 359.97438 * 7 6 5 9 9 C 1.39170 * 120.01666 * 0.04995 * 8 7 6 10 10 C 1.47851 * 120.21356 * 179.97438 * 9 8 7 11 11 O 1.21450 * 119.99638 * 126.85483 * 10 9 8 12 12 O 1.34697 * 120.00076 * 306.58849 * 10 9 8 13 13 C 1.45200 * 117.00488 * 180.27292 * 12 10 9 14 14 H 1.09003 * 109.46665 * 29.99161 * 13 12 10 15 15 C 1.53004 * 109.47170 * 269.99816 * 13 12 10 16 16 C 1.50700 * 109.47575 * 149.99317 * 13 12 10 17 17 O 1.21283 * 119.99413 * 19.61050 * 16 13 12 18 18 N 1.34773 * 120.00356 * 199.60350 * 16 13 12 19 19 C 1.46509 * 119.99889 * 355.21031 * 18 16 13 20 20 C 1.46497 * 120.00311 * 175.20407 * 18 16 13 21 21 C 1.50705 * 109.46986 * 89.99985 * 20 18 16 22 22 H 1.07995 * 119.99991 * 0.02562 * 21 20 18 23 23 C 1.37880 * 119.99848 * 179.97438 * 21 20 18 24 24 N 1.31510 * 119.99854 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99656 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47216 * 60.00297 * 25 23 21 27 27 H 1.48498 * 109.46616 * 180.02562 * 25 23 21 28 28 H 1.48495 * 109.47021 * 300.00111 * 25 23 21 29 29 H 1.09001 * 109.46779 * 239.99726 * 1 2 3 30 30 H 1.08997 * 109.47330 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.47235 * 120.00457 * 1 2 3 32 32 H 1.08004 * 120.01597 * 0.02562 * 5 4 2 33 33 H 1.07993 * 119.78783 * 179.70106 * 6 5 4 34 34 H 1.07999 * 119.77503 * 180.02562 * 7 6 5 35 35 H 1.08004 * 119.99174 * 180.02562 * 8 7 6 36 36 H 1.08996 * 109.46806 * 308.14822 * 15 13 12 37 37 H 1.08998 * 109.47018 * 68.14831 * 15 13 12 38 38 H 1.08993 * 109.46874 * 188.14866 * 15 13 12 39 39 H 1.08991 * 109.47240 * 94.52532 * 19 18 16 40 40 H 1.08993 * 109.46886 * 214.52976 * 19 18 16 41 41 H 1.09002 * 109.46875 * 334.52739 * 19 18 16 42 42 H 1.08998 * 109.47561 * 210.00149 * 20 18 16 43 43 H 1.09003 * 109.47103 * 330.00469 * 20 18 16 44 44 H 0.97003 * 119.99700 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0499 0.0000 4 6 2.2435 -1.2757 -0.0006 5 6 1.5569 -2.4827 0.1279 6 6 2.2536 -3.6761 0.1329 7 6 3.6314 -3.6838 0.0045 8 6 4.3292 -2.4976 -0.1310 9 6 3.6464 -1.2850 -0.1379 10 6 4.3882 -0.0142 -0.2819 11 8 4.0718 0.7791 -1.1454 12 8 5.4114 0.2662 0.5480 13 6 6.0905 1.5346 0.3524 14 1 5.3870 2.2655 -0.0466 15 6 7.2458 1.3480 -0.6332 16 6 6.6296 2.0245 1.6716 17 8 6.7833 1.2475 2.5900 18 7 6.9412 3.3261 1.8308 19 6 6.8557 4.2443 0.6923 20 6 7.3653 3.8227 3.1421 21 6 8.8633 3.7096 3.2617 22 1 9.4416 3.3083 2.4426 23 6 9.4956 4.1194 4.4164 24 7 8.7914 4.6086 5.4135 25 14 11.3525 3.9799 4.5643 26 1 11.9962 4.7871 3.4969 27 1 11.7823 4.4832 5.8936 28 1 11.7550 2.5578 4.4201 29 1 -0.3633 -0.5139 0.8900 30 1 -0.3634 1.0276 0.0005 31 1 -0.3634 -0.5139 -0.8900 32 1 0.4815 -2.4846 0.2279 33 1 1.7193 -4.6088 0.2374 34 1 4.1653 -4.6226 0.0093 35 1 5.4045 -2.5122 -0.2311 36 1 7.8712 0.5171 -0.3067 37 1 6.8466 1.1346 -1.6247 38 1 7.8426 2.2593 -0.6701 39 1 5.8837 4.7374 0.6955 40 1 7.6435 4.9935 0.7699 41 1 6.9763 3.6849 -0.2354 42 1 7.0701 4.8666 3.2482 43 1 6.8925 3.2301 3.9254 44 1 9.2363 4.8972 6.2258 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757494659.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:32 Heat of formation + Delta-G solvation = -115.916352 kcal Electronic energy + Delta-G solvation = -28655.317020 eV Core-core repulsion = 24538.855503 eV Total energy + Delta-G solvation = -4116.461517 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.02085 -39.82905 -38.68644 -38.35767 -36.18177 -34.81108 -32.84514 -32.47769 -32.06315 -31.18244 -29.68107 -27.71658 -26.07372 -25.26400 -24.10520 -23.81663 -22.44134 -20.96162 -20.09832 -18.78014 -18.32601 -17.10867 -16.69684 -16.49804 -16.38582 -16.01475 -15.39361 -15.30827 -15.18736 -14.96637 -14.60845 -14.43143 -14.26022 -14.18678 -13.54057 -13.16982 -12.99805 -12.80731 -12.63881 -12.42156 -12.37991 -12.22082 -12.05669 -12.01530 -11.89146 -11.62894 -11.34617 -11.18999 -10.88819 -10.64862 -10.52273 -10.49835 -10.13826 -9.89619 -9.63203 -9.46560 -9.42939 -8.83481 -8.41474 -7.66507 -6.02264 -4.07036 0.15251 0.69716 2.11911 2.24387 2.56290 3.31653 3.34205 3.36825 3.38005 3.42522 3.65668 3.91050 4.30055 4.45677 4.51186 4.55854 4.70958 4.81447 4.90438 4.92291 5.05935 5.07358 5.09215 5.22395 5.23496 5.32123 5.42917 5.54886 5.60377 5.67126 5.73453 5.79283 5.87996 5.94019 5.96251 6.12216 6.28514 6.31040 6.48292 7.03959 7.27584 7.43090 7.51488 7.79555 7.93697 8.24036 8.35370 8.89219 9.04288 9.57508 11.05966 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.017950 B = 0.002779 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.480703 B =10074.024362 C =10460.477240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.376 3.624 3 O -0.422 6.422 4 C -0.124 4.124 5 C -0.079 4.079 6 C -0.110 4.110 7 C -0.094 4.094 8 C -0.083 4.083 9 C -0.052 4.052 10 C 0.506 3.494 11 O -0.477 6.477 12 O -0.321 6.321 13 C 0.072 3.928 14 H 0.105 0.895 15 C -0.166 4.166 16 C 0.509 3.491 17 O -0.518 6.518 18 N -0.597 5.597 19 C 0.072 3.928 20 C 0.248 3.752 21 C -0.526 4.526 22 H 0.058 0.942 23 C 0.061 3.939 24 N -0.895 5.895 25 Si 0.899 3.101 26 H -0.277 1.277 27 H -0.286 1.286 28 H -0.276 1.276 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.141 0.859 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.141 0.859 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.049 0.951 40 H 0.078 0.922 41 H 0.062 0.938 42 H 0.036 0.964 43 H 0.043 0.957 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.434 -15.333 -15.166 27.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.251 3.749 3 O -0.294 6.294 4 C -0.126 4.126 5 C -0.097 4.097 6 C -0.128 4.128 7 C -0.112 4.112 8 C -0.101 4.101 9 C -0.054 4.054 10 C 0.348 3.652 11 O -0.363 6.363 12 O -0.236 6.236 13 C 0.013 3.987 14 H 0.123 0.877 15 C -0.224 4.224 16 C 0.293 3.707 17 O -0.393 6.393 18 N -0.330 5.330 19 C -0.072 4.072 20 C 0.129 3.871 21 C -0.565 4.565 22 H 0.076 0.924 23 C -0.141 4.141 24 N -0.534 5.534 25 Si 0.727 3.273 26 H -0.202 1.202 27 H -0.212 1.212 28 H -0.201 1.201 29 H 0.112 0.888 30 H 0.106 0.894 31 H 0.112 0.888 32 H 0.159 0.841 33 H 0.154 0.846 34 H 0.155 0.845 35 H 0.159 0.841 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.106 0.894 39 H 0.067 0.933 40 H 0.096 0.904 41 H 0.080 0.920 42 H 0.054 0.946 43 H 0.061 0.939 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.075 -14.795 -14.714 26.340 hybrid contribution 1.032 0.013 0.044 1.033 sum -15.043 -14.781 -14.670 25.690 Atomic orbital electron populations 1.22206 0.93000 1.05521 1.04383 1.22601 0.92053 0.87524 0.72728 1.90691 1.71551 1.33905 1.33300 1.20553 0.92151 0.96138 1.03718 1.21393 1.00430 0.90821 0.97073 1.21368 0.94471 0.98317 0.98629 1.21408 0.94479 0.98220 0.97080 1.21370 1.00924 0.90777 0.96993 1.19256 0.92421 0.91757 1.01947 1.20999 0.78219 0.86196 0.79800 1.90832 1.64841 1.47209 1.33429 1.86705 1.43287 1.38687 1.54943 1.22686 0.95082 0.84470 0.96457 0.87734 1.22212 0.97519 1.04510 0.98137 1.19758 0.79688 0.83147 0.88066 1.90696 1.52613 1.53900 1.42112 1.48075 1.65429 1.06663 1.12874 1.21861 1.01845 0.94706 0.88755 1.19331 0.95266 0.94775 0.77736 1.21385 0.91930 1.42036 1.01174 0.92407 1.24940 0.98664 0.95085 0.95428 1.69925 1.35734 1.42334 1.05425 0.86539 0.85094 0.78540 0.77136 1.20242 1.21175 1.20148 0.88762 0.89386 0.88828 0.84093 0.84623 0.84455 0.84067 0.90644 0.91239 0.89434 0.93287 0.90359 0.91959 0.94615 0.93864 0.92641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.34 9.02 36.01 0.32 -1.01 16 2 C 0.38 4.58 7.12 -30.62 -0.22 4.36 16 3 O -0.42 -7.23 13.66 -18.60 -0.25 -7.49 16 4 C -0.12 -1.40 5.89 -104.73 -0.62 -2.02 16 5 C -0.08 -0.56 9.46 -39.14 -0.37 -0.93 16 6 C -0.11 -0.67 10.03 -39.55 -0.40 -1.07 16 7 C -0.09 -0.68 10.03 -39.51 -0.40 -1.08 16 8 C -0.08 -0.86 9.77 -39.22 -0.38 -1.24 16 9 C -0.05 -0.71 5.79 -104.59 -0.61 -1.31 16 10 C 0.51 8.61 6.08 34.66 0.21 8.82 16 11 O -0.48 -8.84 13.86 -27.27 -0.38 -9.22 16 12 O -0.32 -6.06 9.50 -46.93 -0.45 -6.51 16 13 C 0.07 1.33 2.14 -27.88 -0.06 1.27 16 14 H 0.10 1.88 6.39 -51.93 -0.33 1.55 16 15 C -0.17 -2.50 9.14 37.16 0.34 -2.16 16 16 C 0.51 11.73 6.93 -10.99 -0.08 11.65 16 17 O -0.52 -14.18 16.24 -13.24 -0.22 -14.40 16 18 N -0.60 -13.53 2.86 -182.95 -0.52 -14.05 16 19 C 0.07 1.24 9.86 59.85 0.59 1.83 16 20 C 0.25 6.72 5.15 -5.19 -0.03 6.69 16 21 C -0.53 -15.25 9.39 -34.44 -0.32 -15.57 16 22 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 23 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 24 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 25 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 29 H 0.09 0.43 7.90 -51.93 -0.41 0.02 16 30 H 0.09 0.65 8.12 -51.93 -0.42 0.23 16 31 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.14 0.51 6.98 -52.48 -0.37 0.15 16 33 H 0.14 0.41 8.06 -52.49 -0.42 -0.02 16 34 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 35 H 0.14 1.33 8.06 -52.48 -0.42 0.91 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.09 1.23 6.17 -51.93 -0.32 0.91 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.08 1.32 8.11 -51.93 -0.42 0.90 16 41 H 0.06 0.90 4.57 -51.93 -0.24 0.66 16 42 H 0.04 0.97 8.07 -51.93 -0.42 0.55 16 43 H 0.04 1.32 7.49 -51.93 -0.39 0.93 16 44 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 378.20 15.07 5.70 5.70 Total: -1.00 -39.07 378.20 -8.33 -47.40 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -5.82 Total: -2.18 kcal Atomic # 6 Polarization: 12.01 SS G_CDS: -2.10 Total: 9.91 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 0.21 Total: -40.36 kcal Atomic # 8 Polarization: -36.32 SS G_CDS: -1.29 Total: -37.61 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -39.07 -8.33 -47.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757494659.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.517 kcal (2) G-P(sol) polarization free energy of solvation -39.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds