Wall clock time and date at job start Tue Mar 31 2020 18:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21232 * 120.00336 * 2 1 4 4 C 1.47300 * 119.99879 * 180.02562 * 2 1 3 5 5 C 1.39464 * 120.22295 * 353.85428 * 4 2 1 6 6 C 1.38187 * 119.97083 * 180.29628 * 5 4 2 7 7 C 1.38381 * 120.42606 * 359.68656 * 6 5 4 8 8 C 1.38289 * 120.45182 * 359.97438 * 7 6 5 9 9 C 1.39170 * 120.01666 * 0.04995 * 8 7 6 10 10 C 1.47851 * 120.21356 * 179.97438 * 9 8 7 11 11 O 1.21450 * 119.99638 * 126.85483 * 10 9 8 12 12 O 1.34697 * 120.00076 * 306.58849 * 10 9 8 13 13 C 1.45200 * 117.00488 * 180.27292 * 12 10 9 14 14 H 1.09003 * 109.46665 * 29.99161 * 13 12 10 15 15 C 1.53004 * 109.47170 * 269.99816 * 13 12 10 16 16 C 1.50700 * 109.47575 * 149.99317 * 13 12 10 17 17 O 1.21283 * 119.99413 * 19.61050 * 16 13 12 18 18 N 1.34773 * 120.00356 * 199.60350 * 16 13 12 19 19 C 1.46509 * 119.99889 * 355.21031 * 18 16 13 20 20 C 1.46497 * 120.00311 * 175.20407 * 18 16 13 21 21 C 1.50705 * 109.46986 * 89.99985 * 20 18 16 22 22 H 1.07995 * 119.99991 * 0.02562 * 21 20 18 23 23 C 1.37880 * 119.99848 * 179.97438 * 21 20 18 24 24 N 1.31510 * 119.99854 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99656 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47216 * 60.00297 * 25 23 21 27 27 H 1.48498 * 109.46616 * 180.02562 * 25 23 21 28 28 H 1.48495 * 109.47021 * 300.00111 * 25 23 21 29 29 H 1.09001 * 109.46779 * 239.99726 * 1 2 3 30 30 H 1.08997 * 109.47330 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.47235 * 120.00457 * 1 2 3 32 32 H 1.08004 * 120.01597 * 0.02562 * 5 4 2 33 33 H 1.07993 * 119.78783 * 179.70106 * 6 5 4 34 34 H 1.07999 * 119.77503 * 180.02562 * 7 6 5 35 35 H 1.08004 * 119.99174 * 180.02562 * 8 7 6 36 36 H 1.08996 * 109.46806 * 308.14822 * 15 13 12 37 37 H 1.08998 * 109.47018 * 68.14831 * 15 13 12 38 38 H 1.08993 * 109.46874 * 188.14866 * 15 13 12 39 39 H 1.08991 * 109.47240 * 94.52532 * 19 18 16 40 40 H 1.08993 * 109.46886 * 214.52976 * 19 18 16 41 41 H 1.09002 * 109.46875 * 334.52739 * 19 18 16 42 42 H 1.08998 * 109.47561 * 210.00149 * 20 18 16 43 43 H 1.09003 * 109.47103 * 330.00469 * 20 18 16 44 44 H 0.97003 * 119.99700 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0499 0.0000 4 6 2.2435 -1.2757 -0.0006 5 6 1.5569 -2.4827 0.1279 6 6 2.2536 -3.6761 0.1329 7 6 3.6314 -3.6838 0.0045 8 6 4.3292 -2.4976 -0.1310 9 6 3.6464 -1.2850 -0.1379 10 6 4.3882 -0.0142 -0.2819 11 8 4.0718 0.7791 -1.1454 12 8 5.4114 0.2662 0.5480 13 6 6.0905 1.5346 0.3524 14 1 5.3870 2.2655 -0.0466 15 6 7.2458 1.3480 -0.6332 16 6 6.6296 2.0245 1.6716 17 8 6.7833 1.2475 2.5900 18 7 6.9412 3.3261 1.8308 19 6 6.8557 4.2443 0.6923 20 6 7.3653 3.8227 3.1421 21 6 8.8633 3.7096 3.2617 22 1 9.4416 3.3083 2.4426 23 6 9.4956 4.1194 4.4164 24 7 8.7914 4.6086 5.4135 25 14 11.3525 3.9799 4.5643 26 1 11.9962 4.7871 3.4969 27 1 11.7823 4.4832 5.8936 28 1 11.7550 2.5578 4.4201 29 1 -0.3633 -0.5139 0.8900 30 1 -0.3634 1.0276 0.0005 31 1 -0.3634 -0.5139 -0.8900 32 1 0.4815 -2.4846 0.2279 33 1 1.7193 -4.6088 0.2374 34 1 4.1653 -4.6226 0.0093 35 1 5.4045 -2.5122 -0.2311 36 1 7.8712 0.5171 -0.3067 37 1 6.8466 1.1346 -1.6247 38 1 7.8426 2.2593 -0.6701 39 1 5.8837 4.7374 0.6955 40 1 7.6435 4.9935 0.7699 41 1 6.9763 3.6849 -0.2354 42 1 7.0701 4.8666 3.2482 43 1 6.8925 3.2301 3.9254 44 1 9.2363 4.8972 6.2258 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000757494659.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:31 Heat of formation + Delta-G solvation = -140.536037 kcal Electronic energy + Delta-G solvation = -28656.384609 eV Core-core repulsion = 24538.855503 eV Total energy + Delta-G solvation = -4117.529107 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.17242 -41.11188 -40.21292 -39.18165 -37.59104 -36.74205 -34.90627 -33.42495 -33.12435 -32.26025 -30.29060 -29.72871 -27.69940 -26.44427 -25.64773 -24.63302 -24.02242 -22.12441 -20.92145 -20.48685 -19.46026 -18.73110 -18.36531 -17.92827 -17.52384 -17.36342 -16.96065 -16.52158 -16.30165 -16.08211 -16.03800 -15.69435 -15.29911 -15.06776 -14.84754 -14.76833 -14.34844 -14.07186 -13.80378 -13.65548 -13.58503 -13.40555 -13.22367 -13.13841 -13.03340 -12.99618 -12.85588 -12.66783 -12.54897 -12.50697 -12.22037 -12.00752 -11.77377 -11.71113 -10.80006 -10.70220 -10.66550 -10.14281 -10.11694 -9.59721 -8.25253 -6.40419 -0.63181 0.02695 0.96141 1.35269 1.35705 1.36489 1.40981 1.47531 1.56399 2.24841 2.39926 2.67375 2.94537 3.04510 3.31699 3.41175 3.67217 3.71274 3.77533 4.01608 4.06996 4.17775 4.25907 4.28178 4.41633 4.48476 4.51520 4.57415 4.64262 4.65660 4.78043 4.86309 4.88378 4.98824 5.04874 5.09908 5.13426 5.22041 5.26875 5.35717 5.46895 5.73278 5.76160 5.99705 6.39932 6.48666 6.58390 6.67071 7.12790 7.31707 8.82650 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.017950 B = 0.002779 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.480703 B =10074.024362 C =10460.477240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.367 3.633 3 O -0.492 6.492 4 C -0.152 4.152 5 C -0.062 4.062 6 C -0.095 4.095 7 C -0.087 4.087 8 C -0.097 4.097 9 C -0.096 4.096 10 C 0.504 3.496 11 O -0.501 6.501 12 O -0.342 6.342 13 C 0.080 3.920 14 H 0.109 0.891 15 C -0.158 4.158 16 C 0.501 3.499 17 O -0.574 6.574 18 N -0.601 5.601 19 C 0.066 3.934 20 C 0.261 3.739 21 C -0.545 4.545 22 H 0.057 0.943 23 C 0.007 3.993 24 N -0.929 5.929 25 Si 0.972 3.028 26 H -0.258 1.258 27 H -0.277 1.277 28 H -0.277 1.277 29 H 0.125 0.875 30 H 0.077 0.923 31 H 0.126 0.874 32 H 0.184 0.816 33 H 0.182 0.818 34 H 0.171 0.829 35 H 0.138 0.862 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.067 0.933 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.031 0.969 43 H -0.004 1.004 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.443 -17.943 -16.744 30.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.247 3.753 3 O -0.369 6.369 4 C -0.153 4.153 5 C -0.080 4.080 6 C -0.113 4.113 7 C -0.104 4.104 8 C -0.115 4.115 9 C -0.098 4.098 10 C 0.348 3.652 11 O -0.388 6.388 12 O -0.258 6.258 13 C 0.022 3.978 14 H 0.127 0.873 15 C -0.215 4.215 16 C 0.288 3.712 17 O -0.454 6.454 18 N -0.333 5.333 19 C -0.076 4.076 20 C 0.140 3.860 21 C -0.583 4.583 22 H 0.075 0.925 23 C -0.192 4.192 24 N -0.569 5.569 25 Si 0.796 3.204 26 H -0.182 1.182 27 H -0.202 1.202 28 H -0.203 1.203 29 H 0.144 0.856 30 H 0.096 0.904 31 H 0.144 0.856 32 H 0.202 0.798 33 H 0.200 0.800 34 H 0.188 0.812 35 H 0.156 0.844 36 H 0.090 0.910 37 H 0.111 0.889 38 H 0.118 0.882 39 H 0.086 0.914 40 H 0.101 0.899 41 H 0.112 0.888 42 H 0.049 0.951 43 H 0.014 0.986 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.115 -17.399 -16.345 29.374 hybrid contribution 1.210 0.702 0.549 1.503 sum -15.905 -16.697 -15.796 27.951 Atomic orbital electron populations 1.22262 0.88813 1.05956 1.07203 1.23597 0.94515 0.87016 0.70159 1.90663 1.73197 1.36022 1.37019 1.20800 0.91388 0.97561 1.05572 1.21912 1.02400 0.89283 0.94362 1.21968 0.94011 0.99686 0.95599 1.21856 0.95480 0.97989 0.95108 1.21531 1.01155 0.91121 0.97728 1.19399 0.93594 0.90756 1.06018 1.21783 0.77272 0.87362 0.78818 1.90779 1.65114 1.48541 1.34407 1.86711 1.44389 1.38503 1.56240 1.22545 0.96267 0.85015 0.93954 0.87349 1.22210 0.96210 1.05048 0.98036 1.20582 0.78718 0.82703 0.89189 1.90647 1.55028 1.55393 1.44331 1.48086 1.64723 1.07610 1.12855 1.22169 1.03127 0.94384 0.87880 1.18860 0.94547 0.93496 0.79093 1.21637 0.92647 1.42422 1.01637 0.92489 1.25911 1.04123 0.94339 0.94835 1.70052 1.37978 1.42832 1.05997 0.85403 0.78538 0.78533 0.77951 1.18243 1.20214 1.20252 0.85645 0.90374 0.85629 0.79847 0.80042 0.81203 0.84429 0.90960 0.88936 0.88161 0.91428 0.89877 0.88834 0.95099 0.98559 0.92268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.18 9.02 71.24 0.64 -1.53 16 2 C 0.37 9.06 7.12 28.07 0.20 9.26 16 3 O -0.49 -18.09 13.66 20.25 0.28 -17.82 16 4 C -0.15 -3.32 5.89 -19.93 -0.12 -3.44 16 5 C -0.06 -0.64 9.46 22.55 0.21 -0.42 16 6 C -0.10 -0.69 10.03 22.29 0.22 -0.47 16 7 C -0.09 -0.98 10.03 22.32 0.22 -0.76 16 8 C -0.10 -1.99 9.77 22.51 0.22 -1.77 16 9 C -0.10 -2.68 5.79 -19.84 -0.11 -2.79 16 10 C 0.50 18.27 6.08 70.37 0.43 18.70 16 11 O -0.50 -19.70 13.86 27.69 0.38 -19.32 16 12 O -0.34 -13.81 9.50 -49.91 -0.47 -14.28 16 13 C 0.08 3.12 2.14 29.85 0.06 3.18 16 14 H 0.11 4.07 6.39 -2.39 -0.02 4.06 16 15 C -0.16 -4.75 9.14 71.98 0.66 -4.09 16 16 C 0.50 24.38 6.93 87.66 0.61 24.99 16 17 O -0.57 -33.69 16.24 14.93 0.24 -33.45 16 18 N -0.60 -28.38 2.86 -851.13 -2.43 -30.81 16 19 C 0.07 2.26 9.86 127.77 1.26 3.52 16 20 C 0.26 14.93 5.15 85.64 0.44 15.37 16 21 C -0.55 -32.52 9.39 25.60 0.24 -32.28 16 22 H 0.06 3.33 7.81 -2.91 -0.02 3.31 16 23 C 0.01 0.41 5.46 84.66 0.46 0.87 16 24 N -0.93 -57.62 13.29 21.45 0.28 -57.33 16 25 Si 0.97 45.79 29.54 68.60 2.03 47.82 16 26 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 27 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 28 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 29 H 0.13 0.69 7.90 -2.39 -0.02 0.67 16 30 H 0.08 1.09 8.12 -2.39 -0.02 1.07 16 31 H 0.13 0.68 8.14 -2.38 -0.02 0.66 16 32 H 0.18 0.24 6.98 -2.91 -0.02 0.22 16 33 H 0.18 -0.23 8.06 -2.91 -0.02 -0.25 16 34 H 0.17 0.78 8.06 -2.91 -0.02 0.76 16 35 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 36 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.10 2.72 6.17 -2.39 -0.01 2.70 16 39 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.08 2.78 8.11 -2.39 -0.02 2.76 16 41 H 0.09 2.60 4.57 -2.39 -0.01 2.59 16 42 H 0.03 1.77 8.07 -2.39 -0.02 1.75 16 43 H 0.00 -0.24 7.49 -2.39 -0.02 -0.26 16 44 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -94.50 378.20 6.98 -87.52 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: 1.02 Total: 9.32 kcal Atomic # 6 Polarization: 22.70 SS G_CDS: 5.65 Total: 28.35 kcal Atomic # 7 Polarization: -86.00 SS G_CDS: -2.15 Total: -88.14 kcal Atomic # 8 Polarization: -85.29 SS G_CDS: 0.43 Total: -84.87 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -94.50 6.98 -87.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757494659.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.018 kcal (2) G-P(sol) polarization free energy of solvation -94.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds