Wall clock time and date at job start Tue Mar 31 2020 18:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21232 * 120.00354 * 2 1 4 4 C 1.47294 * 119.99989 * 179.97438 * 2 1 3 5 5 C 1.39461 * 120.22379 * 256.17296 * 4 2 1 6 6 C 1.38195 * 119.96876 * 179.97438 * 5 4 2 7 7 C 1.38382 * 120.42847 * 0.02562 * 6 5 4 8 8 C 1.38291 * 120.45089 * 0.02562 * 7 6 5 9 9 C 1.39173 * 120.01576 * 359.96378 * 8 7 6 10 10 C 1.47852 * 120.20937 * 179.97438 * 9 8 7 11 11 O 1.21446 * 120.00149 * 185.63973 * 10 9 8 12 12 O 1.34706 * 119.99809 * 5.64863 * 10 9 8 13 13 C 1.45197 * 116.99809 * 179.97438 * 12 10 9 14 14 H 1.09001 * 109.47225 * 329.99968 * 13 12 10 15 15 C 1.53008 * 109.47245 * 89.99756 * 13 12 10 16 16 C 1.50701 * 109.47314 * 209.99713 * 13 12 10 17 17 O 1.21281 * 119.99575 * 0.02562 * 16 13 12 18 18 N 1.34774 * 120.00190 * 180.02562 * 16 13 12 19 19 C 1.46500 * 120.00160 * 0.02562 * 18 16 13 20 20 C 1.46500 * 119.99764 * 180.02562 * 18 16 13 21 21 C 1.50701 * 109.47047 * 90.00225 * 20 18 16 22 22 H 1.07999 * 120.00041 * 359.97438 * 21 20 18 23 23 C 1.37879 * 120.00103 * 179.97438 * 21 20 18 24 24 N 1.31519 * 119.99870 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00163 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47033 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47420 * 120.00297 * 25 23 21 28 28 H 1.48501 * 109.47285 * 240.00223 * 25 23 21 29 29 H 1.08999 * 109.47329 * 269.99813 * 1 2 3 30 30 H 1.08993 * 109.47474 * 30.00150 * 1 2 3 31 31 H 1.09002 * 109.46949 * 150.00521 * 1 2 3 32 32 H 1.07998 * 120.01442 * 0.25470 * 5 4 2 33 33 H 1.07994 * 119.78542 * 179.97438 * 6 5 4 34 34 H 1.07999 * 119.77165 * 180.02562 * 7 6 5 35 35 H 1.07994 * 119.98786 * 179.97438 * 8 7 6 36 36 H 1.08992 * 109.46852 * 299.99946 * 15 13 12 37 37 H 1.09001 * 109.46836 * 59.99974 * 15 13 12 38 38 H 1.08995 * 109.47060 * 180.02562 * 15 13 12 39 39 H 1.09000 * 109.47288 * 89.99696 * 19 18 16 40 40 H 1.09003 * 109.47277 * 210.00370 * 19 18 16 41 41 H 1.09000 * 109.46994 * 329.99622 * 19 18 16 42 42 H 1.09008 * 109.47059 * 209.99407 * 20 18 16 43 43 H 1.08996 * 109.47808 * 330.00010 * 20 18 16 44 44 H 0.96999 * 119.99839 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0499 0.0000 4 6 2.2434 -1.2756 0.0006 5 6 2.8438 -1.7391 1.1709 6 6 3.5331 -2.9368 1.1656 7 6 3.6332 -3.6827 0.0043 8 6 3.0455 -3.2392 -1.1664 9 6 2.3468 -2.0357 -1.1821 10 6 1.7172 -1.5572 -2.4314 11 8 1.1970 -0.4605 -2.4679 12 8 1.7206 -2.3380 -3.5291 13 6 1.0838 -1.8039 -4.7197 14 1 0.2762 -1.1319 -4.4295 15 6 2.1148 -1.0344 -5.5480 16 6 0.5240 -2.9366 -5.5411 17 8 0.6490 -4.0813 -5.1602 18 7 -0.1155 -2.6777 -6.6988 19 6 -0.2660 -1.2950 -7.1592 20 6 -0.6602 -3.7789 -7.4969 21 6 -2.0780 -4.0565 -7.0683 22 1 -2.5282 -3.4716 -6.2799 23 6 -2.8005 -5.0574 -7.6826 24 7 -2.2521 -5.7701 -8.6423 25 14 -4.5577 -5.4021 -7.1508 26 1 -4.9368 -4.4686 -6.0599 27 1 -5.4712 -5.2100 -8.3058 28 1 -4.6622 -6.8012 -6.6644 29 1 -0.3634 0.0000 1.0276 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3633 -0.8901 -0.5138 32 1 2.7663 -1.1644 2.0820 33 1 3.9972 -3.2927 2.0734 34 1 4.1741 -4.6174 0.0122 35 1 3.1287 -3.8270 -2.0685 36 1 2.5196 -0.2151 -4.9539 37 1 2.9224 -1.7064 -5.8382 38 1 1.6366 -0.6331 -6.4415 39 1 0.5871 -1.0243 -7.7813 40 1 -1.1834 -1.2035 -7.7407 41 1 -0.3137 -0.6286 -6.2980 42 1 -0.6467 -3.5044 -8.5518 43 1 -0.0535 -4.6718 -7.3461 44 1 -2.7602 -6.4744 -9.0742 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757494665.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:35 Heat of formation + Delta-G solvation = -116.374560 kcal Electronic energy + Delta-G solvation = -28615.216930 eV Core-core repulsion = 24498.735543 eV Total energy + Delta-G solvation = -4116.481386 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.13418 -39.94027 -38.88667 -38.33873 -36.48048 -35.00348 -33.00851 -32.24488 -32.03903 -31.20306 -29.74164 -27.71761 -26.32579 -25.37369 -24.16006 -23.68614 -22.61030 -21.18978 -20.09572 -18.93990 -18.34642 -17.22687 -16.73320 -16.57851 -16.26549 -16.11915 -15.75883 -15.38338 -15.29231 -15.00158 -14.63567 -14.48458 -14.31749 -14.04822 -13.69658 -13.32810 -13.05542 -12.86021 -12.69570 -12.46473 -12.36767 -12.22943 -12.14289 -12.13134 -11.82071 -11.69775 -11.42788 -11.19289 -10.93685 -10.78049 -10.72955 -10.62237 -10.20775 -9.96637 -9.67374 -9.49733 -9.37397 -8.97359 -8.48765 -7.77852 -6.09666 -4.14700 0.24841 0.78517 1.73892 2.24464 2.32582 3.19765 3.27036 3.31795 3.34930 3.39256 3.69535 3.78993 4.33731 4.40556 4.45876 4.54683 4.75995 4.82697 4.90202 4.93194 4.99274 5.03861 5.15326 5.25150 5.25664 5.33673 5.43302 5.51252 5.60191 5.62496 5.76322 5.79055 5.82165 5.90984 5.95266 5.98469 6.18535 6.26220 6.35345 6.93206 7.22612 7.34258 7.41073 7.53999 7.86335 8.15874 8.23556 8.79416 8.94494 9.50594 10.98515 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014731 B = 0.002868 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.322320 B = 9760.190331 C = 9957.811067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.416 3.584 3 O -0.447 6.447 4 C -0.092 4.092 5 C -0.102 4.102 6 C -0.085 4.085 7 C -0.119 4.119 8 C -0.055 4.055 9 C -0.096 4.096 10 C 0.504 3.496 11 O -0.500 6.500 12 O -0.316 6.316 13 C 0.071 3.929 14 H 0.108 0.892 15 C -0.176 4.176 16 C 0.509 3.491 17 O -0.520 6.520 18 N -0.594 5.594 19 C 0.075 3.925 20 C 0.247 3.753 21 C -0.529 4.529 22 H 0.058 0.942 23 C 0.062 3.938 24 N -0.894 5.894 25 Si 0.899 3.101 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.282 1.282 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.150 0.850 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.095 0.905 39 H 0.052 0.948 40 H 0.079 0.921 41 H 0.059 0.941 42 H 0.037 0.963 43 H 0.046 0.954 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.935 9.272 16.674 21.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.292 3.708 3 O -0.320 6.320 4 C -0.093 4.093 5 C -0.120 4.120 6 C -0.103 4.103 7 C -0.137 4.137 8 C -0.073 4.073 9 C -0.097 4.097 10 C 0.349 3.651 11 O -0.390 6.390 12 O -0.231 6.231 13 C 0.013 3.987 14 H 0.126 0.874 15 C -0.234 4.234 16 C 0.294 3.706 17 O -0.395 6.395 18 N -0.328 5.328 19 C -0.069 4.069 20 C 0.128 3.872 21 C -0.568 4.568 22 H 0.077 0.923 23 C -0.141 4.141 24 N -0.532 5.532 25 Si 0.727 3.273 26 H -0.198 1.198 27 H -0.209 1.209 28 H -0.208 1.208 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.102 0.898 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.156 0.844 35 H 0.168 0.832 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.113 0.887 39 H 0.071 0.929 40 H 0.098 0.902 41 H 0.077 0.923 42 H 0.054 0.946 43 H 0.064 0.936 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.109 9.377 16.659 22.110 hybrid contribution -1.141 -0.244 0.074 1.170 sum 9.967 9.133 16.733 21.511 Atomic orbital electron populations 1.22140 0.92627 1.05667 1.03851 1.22404 0.92076 0.86977 0.69392 1.90555 1.72194 1.33670 1.35585 1.20597 0.98630 0.96537 0.93541 1.21106 0.97377 0.96820 0.96709 1.21400 0.96441 0.93717 0.98705 1.21399 0.99568 1.00498 0.92200 1.21629 0.92688 0.93353 0.99658 1.19051 1.03387 0.97107 0.90195 1.21182 0.76878 0.82886 0.84145 1.90825 1.42948 1.20999 1.84225 1.86632 1.70799 1.46276 1.19345 1.22689 0.96974 0.95806 0.83240 0.87421 1.22417 0.99459 1.00415 1.01071 1.19721 0.79707 0.89102 0.82118 1.90705 1.57835 1.21832 1.69143 1.48056 1.54596 1.08533 1.21613 1.21899 1.02160 0.83102 0.99724 1.19367 0.93982 0.84234 0.89620 1.21461 0.97614 1.17892 1.19826 0.92346 1.24936 0.98680 0.95543 0.94903 1.69940 1.37208 1.21683 1.24418 0.86428 0.84136 0.78327 0.78454 1.19785 1.20904 1.20805 0.88853 0.88845 0.89841 0.84597 0.84608 0.84425 0.83209 0.91280 0.90912 0.88706 0.92948 0.90245 0.92262 0.94551 0.93610 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.91 9.18 36.00 0.33 -1.58 16 2 C 0.42 5.28 4.58 -30.63 -0.14 5.14 16 3 O -0.45 -6.97 17.86 5.60 0.10 -6.87 16 4 C -0.09 -1.06 5.56 -104.73 -0.58 -1.64 16 5 C -0.10 -0.87 9.79 -39.14 -0.38 -1.26 16 6 C -0.08 -0.59 10.03 -39.54 -0.40 -0.99 16 7 C -0.12 -0.94 10.03 -39.51 -0.40 -1.33 16 8 C -0.06 -0.59 9.61 -39.22 -0.38 -0.96 16 9 C -0.10 -1.22 5.91 -104.58 -0.62 -1.83 16 10 C 0.50 7.59 7.84 34.66 0.27 7.87 16 11 O -0.50 -8.00 12.55 -19.22 -0.24 -8.24 16 12 O -0.32 -5.21 8.68 -47.19 -0.41 -5.62 16 13 C 0.07 1.17 2.18 -27.88 -0.06 1.10 16 14 H 0.11 1.69 6.42 -51.93 -0.33 1.35 16 15 C -0.18 -2.29 9.19 37.16 0.34 -1.95 16 16 C 0.51 10.66 7.15 -10.99 -0.08 10.58 16 17 O -0.52 -13.14 16.08 -14.11 -0.23 -13.36 16 18 N -0.59 -12.32 2.86 -182.95 -0.52 -12.84 16 19 C 0.07 1.14 8.80 59.85 0.53 1.66 16 20 C 0.25 6.31 5.16 -5.19 -0.03 6.28 16 21 C -0.53 -14.80 9.39 -34.44 -0.32 -15.12 16 22 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 23 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 24 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 25 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 26 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 28 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 29 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.08 0.89 7.82 -51.93 -0.41 0.48 16 32 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 33 H 0.14 0.54 8.06 -52.49 -0.42 0.11 16 34 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 35 H 0.15 1.61 7.62 -52.49 -0.40 1.21 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.09 1.08 4.53 -51.93 -0.24 0.84 16 39 H 0.05 0.66 6.95 -51.93 -0.36 0.30 16 40 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 41 H 0.06 0.76 6.01 -51.93 -0.31 0.45 16 42 H 0.04 0.93 8.07 -51.92 -0.42 0.51 16 43 H 0.05 1.32 7.42 -51.93 -0.39 0.93 16 44 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 377.80 15.07 5.69 5.69 Total: -1.00 -35.83 377.80 -7.68 -43.51 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -5.78 Total: -1.03 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: -2.01 Total: 7.60 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.21 Total: -38.27 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -0.78 Total: -34.10 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.83 -7.68 -43.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757494665.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.868 kcal (2) G-P(sol) polarization free energy of solvation -35.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds