Wall clock time and date at job start Tue Mar 31 2020 18:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21232 * 120.00354 * 2 1 4 4 C 1.47294 * 119.99989 * 179.97438 * 2 1 3 5 5 C 1.39461 * 120.22379 * 256.17296 * 4 2 1 6 6 C 1.38195 * 119.96876 * 179.97438 * 5 4 2 7 7 C 1.38382 * 120.42847 * 0.02562 * 6 5 4 8 8 C 1.38291 * 120.45089 * 0.02562 * 7 6 5 9 9 C 1.39173 * 120.01576 * 359.96378 * 8 7 6 10 10 C 1.47852 * 120.20937 * 179.97438 * 9 8 7 11 11 O 1.21446 * 120.00149 * 185.63973 * 10 9 8 12 12 O 1.34706 * 119.99809 * 5.64863 * 10 9 8 13 13 C 1.45197 * 116.99809 * 179.97438 * 12 10 9 14 14 H 1.09001 * 109.47225 * 329.99968 * 13 12 10 15 15 C 1.53008 * 109.47245 * 89.99756 * 13 12 10 16 16 C 1.50701 * 109.47314 * 209.99713 * 13 12 10 17 17 O 1.21281 * 119.99575 * 0.02562 * 16 13 12 18 18 N 1.34774 * 120.00190 * 180.02562 * 16 13 12 19 19 C 1.46500 * 120.00160 * 0.02562 * 18 16 13 20 20 C 1.46500 * 119.99764 * 180.02562 * 18 16 13 21 21 C 1.50701 * 109.47047 * 90.00225 * 20 18 16 22 22 H 1.07999 * 120.00041 * 359.97438 * 21 20 18 23 23 C 1.37879 * 120.00103 * 179.97438 * 21 20 18 24 24 N 1.31519 * 119.99870 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00163 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47033 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47420 * 120.00297 * 25 23 21 28 28 H 1.48501 * 109.47285 * 240.00223 * 25 23 21 29 29 H 1.08999 * 109.47329 * 269.99813 * 1 2 3 30 30 H 1.08993 * 109.47474 * 30.00150 * 1 2 3 31 31 H 1.09002 * 109.46949 * 150.00521 * 1 2 3 32 32 H 1.07998 * 120.01442 * 0.25470 * 5 4 2 33 33 H 1.07994 * 119.78542 * 179.97438 * 6 5 4 34 34 H 1.07999 * 119.77165 * 180.02562 * 7 6 5 35 35 H 1.07994 * 119.98786 * 179.97438 * 8 7 6 36 36 H 1.08992 * 109.46852 * 299.99946 * 15 13 12 37 37 H 1.09001 * 109.46836 * 59.99974 * 15 13 12 38 38 H 1.08995 * 109.47060 * 180.02562 * 15 13 12 39 39 H 1.09000 * 109.47288 * 89.99696 * 19 18 16 40 40 H 1.09003 * 109.47277 * 210.00370 * 19 18 16 41 41 H 1.09000 * 109.46994 * 329.99622 * 19 18 16 42 42 H 1.09008 * 109.47059 * 209.99407 * 20 18 16 43 43 H 1.08996 * 109.47808 * 330.00010 * 20 18 16 44 44 H 0.96999 * 119.99839 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0499 0.0000 4 6 2.2434 -1.2756 0.0006 5 6 2.8438 -1.7391 1.1709 6 6 3.5331 -2.9368 1.1656 7 6 3.6332 -3.6827 0.0043 8 6 3.0455 -3.2392 -1.1664 9 6 2.3468 -2.0357 -1.1821 10 6 1.7172 -1.5572 -2.4314 11 8 1.1970 -0.4605 -2.4679 12 8 1.7206 -2.3380 -3.5291 13 6 1.0838 -1.8039 -4.7197 14 1 0.2762 -1.1319 -4.4295 15 6 2.1148 -1.0344 -5.5480 16 6 0.5240 -2.9366 -5.5411 17 8 0.6490 -4.0813 -5.1602 18 7 -0.1155 -2.6777 -6.6988 19 6 -0.2660 -1.2950 -7.1592 20 6 -0.6602 -3.7789 -7.4969 21 6 -2.0780 -4.0565 -7.0683 22 1 -2.5282 -3.4716 -6.2799 23 6 -2.8005 -5.0574 -7.6826 24 7 -2.2521 -5.7701 -8.6423 25 14 -4.5577 -5.4021 -7.1508 26 1 -4.9368 -4.4686 -6.0599 27 1 -5.4712 -5.2100 -8.3058 28 1 -4.6622 -6.8012 -6.6644 29 1 -0.3634 0.0000 1.0276 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3633 -0.8901 -0.5138 32 1 2.7663 -1.1644 2.0820 33 1 3.9972 -3.2927 2.0734 34 1 4.1741 -4.6174 0.0122 35 1 3.1287 -3.8270 -2.0685 36 1 2.5196 -0.2151 -4.9539 37 1 2.9224 -1.7064 -5.8382 38 1 1.6366 -0.6331 -6.4415 39 1 0.5871 -1.0243 -7.7813 40 1 -1.1834 -1.2035 -7.7407 41 1 -0.3137 -0.6286 -6.2980 42 1 -0.6467 -3.5044 -8.5518 43 1 -0.0535 -4.6718 -7.3461 44 1 -2.7602 -6.4744 -9.0742 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000757494665.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:34 Heat of formation + Delta-G solvation = -138.006454 kcal Electronic energy + Delta-G solvation = -28616.154959 eV Core-core repulsion = 24498.735543 eV Total energy + Delta-G solvation = -4117.419416 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.24382 -41.12451 -40.30111 -39.21007 -37.73813 -36.75509 -34.95198 -33.38664 -32.95099 -32.24356 -30.55500 -29.58035 -27.78552 -26.43691 -25.70023 -24.47780 -24.11595 -22.34060 -20.99743 -20.47060 -19.41778 -18.70782 -18.38950 -17.84498 -17.51636 -17.36157 -17.07459 -16.55433 -16.45662 -16.26659 -15.99080 -15.72008 -15.19969 -15.12409 -14.91991 -14.69567 -14.32856 -14.19012 -13.85450 -13.63176 -13.57228 -13.46897 -13.35637 -13.16828 -13.05073 -12.94026 -12.82822 -12.63946 -12.54484 -12.44313 -12.22854 -12.00900 -11.83500 -11.70271 -10.91106 -10.66828 -10.66391 -10.23734 -10.10137 -9.54458 -8.25048 -6.39564 -0.59323 0.06534 0.78942 1.10472 1.29410 1.36133 1.38231 1.49622 1.58247 2.26337 2.40505 2.55843 2.86434 3.05130 3.31024 3.36466 3.68111 3.72204 3.78165 3.90429 4.08974 4.22892 4.24243 4.29958 4.38314 4.46394 4.52890 4.55813 4.57816 4.64324 4.79768 4.84170 4.92374 5.00802 5.04546 5.06725 5.11212 5.19355 5.22483 5.31781 5.49246 5.70617 5.75981 6.01864 6.28857 6.35641 6.56978 6.69139 7.17047 7.33793 8.82515 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014731 B = 0.002868 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.322320 B = 9760.190331 C = 9957.811067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.417 3.583 3 O -0.485 6.485 4 C -0.111 4.111 5 C -0.099 4.099 6 C -0.067 4.067 7 C -0.112 4.112 8 C -0.068 4.068 9 C -0.122 4.122 10 C 0.502 3.498 11 O -0.517 6.517 12 O -0.331 6.331 13 C 0.080 3.920 14 H 0.117 0.883 15 C -0.168 4.168 16 C 0.502 3.498 17 O -0.576 6.576 18 N -0.598 5.598 19 C 0.067 3.933 20 C 0.260 3.740 21 C -0.547 4.547 22 H 0.052 0.948 23 C 0.010 3.990 24 N -0.926 5.926 25 Si 0.967 3.033 26 H -0.269 1.269 27 H -0.268 1.268 28 H -0.281 1.281 29 H 0.126 0.874 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.161 0.839 33 H 0.179 0.821 34 H 0.168 0.832 35 H 0.139 0.861 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.115 0.885 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.034 0.966 43 H 0.002 0.998 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.135 9.965 18.804 24.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.295 3.705 3 O -0.362 6.362 4 C -0.112 4.112 5 C -0.117 4.117 6 C -0.084 4.084 7 C -0.130 4.130 8 C -0.086 4.086 9 C -0.124 4.124 10 C 0.348 3.652 11 O -0.408 6.408 12 O -0.247 6.247 13 C 0.022 3.978 14 H 0.134 0.866 15 C -0.225 4.225 16 C 0.289 3.711 17 O -0.455 6.455 18 N -0.330 5.330 19 C -0.075 4.075 20 C 0.139 3.861 21 C -0.585 4.585 22 H 0.070 0.930 23 C -0.189 4.189 24 N -0.565 5.565 25 Si 0.791 3.209 26 H -0.193 1.193 27 H -0.193 1.193 28 H -0.206 1.206 29 H 0.144 0.856 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.179 0.821 33 H 0.196 0.804 34 H 0.185 0.815 35 H 0.157 0.843 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.133 0.867 39 H 0.104 0.896 40 H 0.095 0.905 41 H 0.106 0.894 42 H 0.052 0.948 43 H 0.021 0.979 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.309 10.112 18.776 24.139 hybrid contribution -1.135 -0.506 -0.527 1.350 sum 10.174 9.606 18.249 22.996 Atomic orbital electron populations 1.22170 0.91333 1.04913 1.05735 1.22818 0.93015 0.86939 0.67700 1.90533 1.72984 1.34938 1.37697 1.20658 0.99923 0.96263 0.94352 1.21506 0.96274 0.97511 0.96380 1.21894 0.94517 0.92296 0.99732 1.21779 0.98446 1.01449 0.91286 1.21689 0.93338 0.92817 1.00728 1.19041 1.05307 0.98592 0.89434 1.21697 0.76607 0.82592 0.84300 1.90798 1.43976 1.21566 1.84439 1.86635 1.70927 1.47215 1.19890 1.22576 0.98315 0.93585 0.83327 0.86572 1.22419 0.98509 1.00161 1.01380 1.20526 0.78885 0.89655 0.82073 1.90663 1.59930 1.24414 1.70533 1.48025 1.53925 1.09738 1.21308 1.22252 1.03567 0.80245 1.01423 1.18862 0.92571 0.84544 0.90076 1.21720 0.98725 1.18287 1.19787 0.92964 1.25827 1.03084 0.95185 0.94829 1.70045 1.38976 1.22158 1.25335 0.85377 0.78991 0.77989 0.78510 1.19312 1.19297 1.20643 0.85569 0.89560 0.90452 0.82143 0.80394 0.81486 0.84267 0.89975 0.91113 0.86695 0.89582 0.90550 0.89444 0.94816 0.97947 0.92282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.72 9.18 71.23 0.65 -3.07 16 2 C 0.42 10.46 4.58 28.07 0.13 10.59 16 3 O -0.49 -15.24 17.86 -2.88 -0.05 -15.29 16 4 C -0.11 -2.47 5.56 -19.93 -0.11 -2.58 16 5 C -0.10 -1.42 9.79 22.55 0.22 -1.20 16 6 C -0.07 -0.67 10.03 22.29 0.22 -0.45 16 7 C -0.11 -1.46 10.03 22.32 0.22 -1.24 16 8 C -0.07 -1.41 9.61 22.51 0.22 -1.19 16 9 C -0.12 -3.11 5.91 -19.84 -0.12 -3.23 16 10 C 0.50 15.48 7.84 70.37 0.55 16.03 16 11 O -0.52 -16.80 12.55 20.01 0.25 -16.55 16 12 O -0.33 -11.29 8.68 -49.77 -0.43 -11.73 16 13 C 0.08 2.63 2.18 29.85 0.07 2.69 16 14 H 0.12 3.60 6.42 -2.39 -0.02 3.58 16 15 C -0.17 -4.15 9.19 71.98 0.66 -3.49 16 16 C 0.50 21.66 7.15 87.66 0.63 22.28 16 17 O -0.58 -30.73 16.08 15.77 0.25 -30.48 16 18 N -0.60 -25.20 2.86 -851.12 -2.43 -27.63 16 19 C 0.07 1.93 8.80 127.77 1.12 3.05 16 20 C 0.26 13.85 5.16 85.63 0.44 14.29 16 21 C -0.55 -31.34 9.39 25.60 0.24 -31.10 16 22 H 0.05 2.99 7.81 -2.91 -0.02 2.96 16 23 C 0.01 0.58 5.46 84.65 0.46 1.04 16 24 N -0.93 -55.27 13.29 21.45 0.28 -54.99 16 25 Si 0.97 44.61 29.54 68.60 2.03 46.63 16 26 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 27 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 28 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 29 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.08 1.66 7.82 -2.39 -0.02 1.64 16 32 H 0.16 1.47 8.06 -2.91 -0.02 1.44 16 33 H 0.18 0.35 8.06 -2.91 -0.02 0.33 16 34 H 0.17 1.18 8.06 -2.91 -0.02 1.15 16 35 H 0.14 3.12 7.62 -2.91 -0.02 3.10 16 36 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.11 2.33 4.53 -2.39 -0.01 2.31 16 39 H 0.09 1.94 6.95 -2.39 -0.02 1.92 16 40 H 0.08 2.28 8.07 -2.39 -0.02 2.26 16 41 H 0.09 2.05 6.01 -2.39 -0.01 2.03 16 42 H 0.03 1.79 8.07 -2.38 -0.02 1.77 16 43 H 0.00 0.15 7.42 -2.39 -0.02 0.13 16 44 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -82.71 377.80 6.54 -76.17 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 1.03 Total: 11.43 kcal Atomic # 6 Polarization: 16.83 SS G_CDS: 5.61 Total: 22.44 kcal Atomic # 7 Polarization: -80.48 SS G_CDS: -2.15 Total: -82.62 kcal Atomic # 8 Polarization: -74.07 SS G_CDS: 0.02 Total: -74.05 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Total: -82.71 6.54 -76.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757494665.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.836 kcal (2) G-P(sol) polarization free energy of solvation -82.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds