Wall clock time and date at job start Tue Mar 31 2020 18:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.51090 * 2 1 4 4 C 1.52886 * 109.58341 * 239.98630 * 2 1 3 5 5 N 1.47144 * 108.60733 * 187.92373 * 4 2 1 6 6 C 1.34780 * 120.97955 * 230.50317 * 5 4 2 7 7 O 1.21282 * 120.00049 * 359.71286 * 6 5 4 8 8 C 1.50706 * 119.99920 * 179.72058 * 6 5 4 9 9 O 1.45199 * 109.47017 * 179.97438 * 8 6 5 10 10 C 1.34780 * 116.99884 * 179.97438 * 9 8 6 11 11 O 1.21507 * 120.00001 * 359.97438 * 10 9 8 12 12 C 1.47505 * 119.99773 * 179.97438 * 10 9 8 13 13 C 1.40069 * 119.89579 * 180.02562 * 12 10 9 14 14 C 1.36301 * 120.09875 * 179.97438 * 13 12 10 15 15 C 1.40907 * 119.89661 * 0.02562 * 14 13 12 16 16 C 1.41090 * 120.09707 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99767 * 154.42158 * 16 15 14 18 18 C 1.40250 * 120.00211 * 334.43252 * 16 15 14 19 19 N 1.30637 * 119.99985 * 334.64448 * 18 16 15 20 20 Si 1.86800 * 120.00085 * 154.37127 * 18 16 15 21 21 H 1.48500 * 109.47189 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46975 * 119.99618 * 20 18 16 23 23 H 1.48497 * 109.47347 * 239.99664 * 20 18 16 24 24 C 1.40895 * 119.80247 * 0.25661 * 15 14 13 25 25 C 1.36297 * 119.89594 * 359.45876 * 24 15 14 26 26 C 1.47155 * 118.03905 * 50.22484 * 5 4 2 27 27 C 1.53297 * 108.38185 * 309.71596 * 26 5 4 28 28 O 1.42958 * 109.51499 * 120.10365 * 2 1 3 29 29 H 1.08990 * 109.47271 * 299.89501 * 1 2 3 30 30 H 1.09004 * 109.46743 * 59.89632 * 1 2 3 31 31 H 1.08999 * 109.47092 * 179.89627 * 1 2 3 32 32 H 1.08997 * 109.61801 * 68.09926 * 4 2 1 33 33 H 1.08997 * 109.52088 * 307.69087 * 4 2 1 34 34 H 1.08997 * 109.47218 * 59.99268 * 8 6 5 35 35 H 1.09003 * 109.46811 * 299.99195 * 8 6 5 36 36 H 1.07998 * 119.95508 * 359.97315 * 13 12 10 37 37 H 1.07999 * 120.05014 * 179.97438 * 14 13 12 38 38 H 0.97004 * 119.99564 * 353.96018 * 19 18 16 39 39 H 1.07998 * 120.05081 * 179.72702 * 24 15 14 40 40 H 1.08008 * 119.94758 * 180.25407 * 25 24 15 41 41 H 1.08998 * 109.67792 * 69.44154 * 26 5 4 42 42 H 1.08998 * 109.67909 * 189.99279 * 26 5 4 43 43 H 1.09002 * 109.50865 * 172.22340 * 27 26 5 44 44 H 1.08991 * 109.51521 * 292.37933 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0425 -0.7205 -1.2473 5 7 3.5011 -0.8767 -1.1333 6 6 4.3193 -0.5042 -2.1375 7 8 3.8554 -0.0371 -3.1561 8 6 5.8106 -0.6682 -1.9946 9 8 6.4670 -0.1985 -3.2016 10 6 7.8121 -0.2761 -3.2363 11 8 8.4196 -0.7235 -2.2839 12 6 8.5466 0.1822 -4.4306 13 6 9.9445 0.1001 -4.4646 14 6 10.6273 0.5219 -5.5663 15 6 9.9249 1.0416 -6.6717 16 6 10.6275 1.4799 -7.8140 17 1 10.1411 1.4846 -8.7783 18 6 11.9576 1.9092 -7.6973 19 7 12.3958 2.3758 -6.5586 20 14 13.1046 1.8067 -9.1682 21 1 12.3715 1.2408 -10.3291 22 1 13.5958 3.1662 -9.5085 23 1 14.2580 0.9323 -8.8365 24 6 8.5192 1.1277 -6.6306 25 6 7.8443 0.6982 -5.5271 26 6 4.0407 -1.4458 0.1119 27 6 3.4313 -0.6849 1.2950 28 8 2.0076 -0.6758 1.1657 29 1 -0.3633 0.5121 0.8908 30 1 -0.3633 0.5155 -0.8891 31 1 -0.3633 -1.0277 -0.0019 32 1 1.8043 -0.1323 -2.1335 33 1 1.5728 -1.7014 -1.3201 34 1 6.0471 -1.7207 -1.8388 35 1 6.1599 -0.0871 -1.1411 36 1 10.4821 -0.2979 -3.6168 37 1 11.7052 0.4586 -5.5915 38 1 11.7813 2.5076 -5.8197 39 1 7.9770 1.5294 -7.4738 40 1 6.7664 0.7600 -5.4963 41 1 3.7757 -2.5010 0.1782 42 1 5.1252 -1.3375 0.1252 43 1 3.7091 -1.1777 2.2267 44 1 3.8029 0.3397 1.2993 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758680595.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:55 Heat of formation + Delta-G solvation = -151.805191 kcal Electronic energy + Delta-G solvation = -27594.826640 eV Core-core repulsion = 23476.808866 eV Total energy + Delta-G solvation = -4118.017774 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.77175 -39.72017 -38.58564 -37.66498 -35.69930 -35.14114 -34.18796 -33.48316 -30.31842 -29.88287 -29.25326 -29.07221 -26.44435 -25.59929 -23.86675 -22.55666 -21.68791 -21.17166 -20.12959 -19.63351 -18.22129 -17.78328 -17.19972 -16.76293 -16.52063 -16.50222 -15.86609 -15.52906 -15.31183 -14.89919 -14.73143 -14.34278 -14.06582 -13.79238 -13.74871 -13.29515 -12.98650 -12.81435 -12.65697 -12.52340 -12.43338 -12.22432 -12.18303 -11.99001 -11.67391 -11.51390 -11.18597 -11.12896 -11.06321 -10.59009 -10.55623 -10.45530 -10.05270 -9.99003 -9.74102 -9.61450 -9.28039 -8.95693 -8.00933 -7.87055 -7.52642 -4.80927 1.92464 2.21053 2.32647 2.82800 2.97290 3.01530 3.19995 3.22834 3.33632 3.51260 3.77906 4.14828 4.22823 4.36772 4.49572 4.54019 4.62590 4.69093 4.83747 5.01043 5.02989 5.12306 5.13232 5.27126 5.29719 5.34745 5.36303 5.52230 5.69478 5.73005 5.98696 6.05272 6.11674 6.59052 6.67805 6.73762 6.79518 6.87093 6.93235 7.15086 7.36933 7.47325 7.54527 7.63488 7.85649 7.86824 8.02478 8.42333 8.53052 8.56331 9.67210 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.034124 B = 0.001966 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.338574 B =14239.769259 C =14782.937605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.073 3.927 3 H 0.064 0.936 4 C 0.085 3.915 5 N -0.619 5.619 6 C 0.521 3.479 7 O -0.509 6.509 8 C 0.052 3.948 9 O -0.337 6.337 10 C 0.516 3.484 11 O -0.552 6.552 12 C -0.285 4.285 13 C -0.011 4.011 14 C -0.236 4.236 15 C 0.109 3.891 16 C -0.480 4.480 17 H 0.087 0.913 18 C 0.033 3.967 19 N -0.766 5.766 20 Si 1.073 2.927 21 H -0.272 1.272 22 H -0.274 1.274 23 H -0.270 1.270 24 C -0.238 4.238 25 C -0.019 4.019 26 C 0.068 3.932 27 C 0.048 3.952 28 O -0.377 6.377 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.103 0.897 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.112 0.888 38 H 0.306 0.694 39 H 0.101 0.899 40 H 0.107 0.893 41 H 0.083 0.917 42 H 0.097 0.903 43 H 0.110 0.890 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.582 -4.661 12.121 20.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.014 3.986 3 H 0.082 0.918 4 C -0.037 4.037 5 N -0.357 5.357 6 C 0.308 3.692 7 O -0.382 6.382 8 C -0.026 4.026 9 O -0.254 6.254 10 C 0.369 3.631 11 O -0.446 6.446 12 C -0.287 4.287 13 C -0.030 4.030 14 C -0.255 4.255 15 C 0.105 3.895 16 C -0.506 4.506 17 H 0.105 0.895 18 C -0.193 4.193 19 N -0.387 5.387 20 Si 0.896 3.104 21 H -0.197 1.197 22 H -0.199 1.199 23 H -0.195 1.195 24 C -0.258 4.258 25 C -0.038 4.038 26 C -0.055 4.055 27 C -0.029 4.029 28 O -0.296 6.296 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.122 0.878 33 H 0.095 0.905 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.123 0.877 37 H 0.130 0.870 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.125 0.875 41 H 0.101 0.899 42 H 0.116 0.884 43 H 0.128 0.872 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.213 -4.330 11.526 18.804 hybrid contribution -1.361 -0.297 0.715 1.566 sum -15.575 -4.627 12.240 20.342 Atomic orbital electron populations 1.21727 0.91925 1.03346 1.03069 1.22443 0.95799 0.95515 0.84822 0.91752 1.22265 0.79395 1.02184 0.99896 1.48039 1.06788 1.64339 1.16543 1.20282 0.88213 0.77681 0.83004 1.90749 1.76917 1.42597 1.27983 1.22443 0.89361 1.01850 0.88919 1.86687 1.22811 1.77548 1.38387 1.21631 0.78751 0.74851 0.87891 1.90701 1.68713 1.46994 1.38182 1.18079 0.92560 1.23638 0.94465 1.20378 0.91762 0.94182 0.96689 1.20835 0.99201 1.09570 0.95937 1.17900 0.92045 0.87560 0.91955 1.21027 0.98430 1.34831 0.96268 0.89519 1.27376 0.97919 0.91570 1.02392 1.70331 1.41532 1.23127 1.03714 0.83516 0.75361 0.78163 0.73404 1.19710 1.19949 1.19510 1.20691 0.94293 1.11607 0.99175 1.20642 0.98141 0.92685 0.92298 1.22553 1.00097 0.98915 0.83974 1.22975 0.81371 1.00404 0.98180 1.87970 1.20722 1.77472 1.43400 0.91298 0.90541 0.91455 0.87842 0.90462 0.88643 0.88736 0.87745 0.87012 0.87923 0.88038 0.87494 0.89863 0.88426 0.87206 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 9.57 37.16 0.36 -0.50 16 2 C 0.07 0.59 3.39 -26.79 -0.09 0.50 16 3 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 4 C 0.08 0.79 5.90 -3.75 -0.02 0.77 16 5 N -0.62 -6.60 3.03 -172.53 -0.52 -7.12 16 6 C 0.52 7.49 7.79 -10.98 -0.09 7.40 16 7 O -0.51 -9.35 15.97 -14.10 -0.23 -9.58 16 8 C 0.05 0.77 4.33 36.01 0.16 0.92 16 9 O -0.34 -6.67 8.98 -47.39 -0.43 -7.09 16 10 C 0.52 11.27 7.89 34.51 0.27 11.55 16 11 O -0.55 -12.39 16.11 -19.27 -0.31 -12.70 16 12 C -0.28 -6.69 5.89 -104.75 -0.62 -7.31 16 13 C -0.01 -0.27 9.52 -39.59 -0.38 -0.65 16 14 C -0.24 -5.85 7.89 -39.27 -0.31 -6.16 16 15 C 0.11 2.75 5.30 -106.80 -0.57 2.18 16 16 C -0.48 -11.78 8.98 -37.75 -0.34 -12.11 16 17 H 0.09 2.04 7.97 -52.49 -0.42 1.62 16 18 C 0.03 0.77 4.94 -17.30 -0.09 0.69 16 19 N -0.77 -18.87 12.29 55.56 0.68 -18.18 16 20 Si 1.07 19.72 30.01 -169.99 -5.10 14.62 16 21 H -0.27 -4.77 7.11 56.52 0.40 -4.37 16 22 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 23 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 24 C -0.24 -5.68 9.73 -39.28 -0.38 -6.07 16 25 C -0.02 -0.44 9.54 -39.60 -0.38 -0.81 16 26 C 0.07 0.51 6.54 -3.53 -0.02 0.48 16 27 C 0.05 0.33 6.98 37.31 0.26 0.59 16 28 O -0.38 -3.28 10.38 -35.23 -0.37 -3.65 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.10 1.09 7.08 -51.93 -0.37 0.72 16 33 H 0.08 0.65 8.13 -51.93 -0.42 0.23 16 34 H 0.10 1.23 8.01 -51.93 -0.42 0.82 16 35 H 0.09 1.21 7.65 -51.93 -0.40 0.81 16 36 H 0.10 2.37 7.63 -52.49 -0.40 1.97 16 37 H 0.11 2.79 6.48 -52.49 -0.34 2.45 16 38 H 0.31 7.79 6.70 -40.82 -0.27 7.52 16 39 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 40 H 0.11 2.31 7.59 -52.48 -0.40 1.91 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.10 0.64 6.05 -51.93 -0.31 0.32 16 43 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 370.62 15.07 5.59 5.59 Total: -1.00 -30.76 370.62 -8.84 -39.60 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -5.93 Total: 7.05 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: -2.23 Total: -8.53 kcal Atomic # 7 Polarization: -25.46 SS G_CDS: 0.16 Total: -25.30 kcal Atomic # 8 Polarization: -31.69 SS G_CDS: -1.33 Total: -33.02 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.10 Total: 14.62 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.76 -8.84 -39.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758680595.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.209 kcal (2) G-P(sol) polarization free energy of solvation -30.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds