Wall clock time and date at job start Tue Mar 31 2020 18:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.51090 * 2 1 4 4 C 1.52886 * 109.58341 * 239.98630 * 2 1 3 5 5 N 1.47144 * 108.60733 * 187.92373 * 4 2 1 6 6 C 1.34780 * 120.97955 * 230.50317 * 5 4 2 7 7 O 1.21282 * 120.00049 * 359.71286 * 6 5 4 8 8 C 1.50706 * 119.99920 * 179.72058 * 6 5 4 9 9 O 1.45199 * 109.47017 * 179.97438 * 8 6 5 10 10 C 1.34780 * 116.99884 * 179.97438 * 9 8 6 11 11 O 1.21507 * 120.00001 * 359.97438 * 10 9 8 12 12 C 1.47505 * 119.99773 * 179.97438 * 10 9 8 13 13 C 1.40069 * 119.89579 * 180.02562 * 12 10 9 14 14 C 1.36301 * 120.09875 * 179.97438 * 13 12 10 15 15 C 1.40907 * 119.89661 * 0.02562 * 14 13 12 16 16 C 1.41090 * 120.09707 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99767 * 154.42158 * 16 15 14 18 18 C 1.40250 * 120.00211 * 334.43252 * 16 15 14 19 19 N 1.30637 * 119.99985 * 334.64448 * 18 16 15 20 20 Si 1.86800 * 120.00085 * 154.37127 * 18 16 15 21 21 H 1.48500 * 109.47189 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46975 * 119.99618 * 20 18 16 23 23 H 1.48497 * 109.47347 * 239.99664 * 20 18 16 24 24 C 1.40895 * 119.80247 * 0.25661 * 15 14 13 25 25 C 1.36297 * 119.89594 * 359.45876 * 24 15 14 26 26 C 1.47155 * 118.03905 * 50.22484 * 5 4 2 27 27 C 1.53297 * 108.38185 * 309.71596 * 26 5 4 28 28 O 1.42958 * 109.51499 * 120.10365 * 2 1 3 29 29 H 1.08990 * 109.47271 * 299.89501 * 1 2 3 30 30 H 1.09004 * 109.46743 * 59.89632 * 1 2 3 31 31 H 1.08999 * 109.47092 * 179.89627 * 1 2 3 32 32 H 1.08997 * 109.61801 * 68.09926 * 4 2 1 33 33 H 1.08997 * 109.52088 * 307.69087 * 4 2 1 34 34 H 1.08997 * 109.47218 * 59.99268 * 8 6 5 35 35 H 1.09003 * 109.46811 * 299.99195 * 8 6 5 36 36 H 1.07998 * 119.95508 * 359.97315 * 13 12 10 37 37 H 1.07999 * 120.05014 * 179.97438 * 14 13 12 38 38 H 0.97004 * 119.99564 * 353.96018 * 19 18 16 39 39 H 1.07998 * 120.05081 * 179.72702 * 24 15 14 40 40 H 1.08008 * 119.94758 * 180.25407 * 25 24 15 41 41 H 1.08998 * 109.67792 * 69.44154 * 26 5 4 42 42 H 1.08998 * 109.67909 * 189.99279 * 26 5 4 43 43 H 1.09002 * 109.50865 * 172.22340 * 27 26 5 44 44 H 1.08991 * 109.51521 * 292.37933 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0425 -0.7205 -1.2473 5 7 3.5011 -0.8767 -1.1333 6 6 4.3193 -0.5042 -2.1375 7 8 3.8554 -0.0371 -3.1561 8 6 5.8106 -0.6682 -1.9946 9 8 6.4670 -0.1985 -3.2016 10 6 7.8121 -0.2761 -3.2363 11 8 8.4196 -0.7235 -2.2839 12 6 8.5466 0.1822 -4.4306 13 6 9.9445 0.1001 -4.4646 14 6 10.6273 0.5219 -5.5663 15 6 9.9249 1.0416 -6.6717 16 6 10.6275 1.4799 -7.8140 17 1 10.1411 1.4846 -8.7783 18 6 11.9576 1.9092 -7.6973 19 7 12.3958 2.3758 -6.5586 20 14 13.1046 1.8067 -9.1682 21 1 12.3715 1.2408 -10.3291 22 1 13.5958 3.1662 -9.5085 23 1 14.2580 0.9323 -8.8365 24 6 8.5192 1.1277 -6.6306 25 6 7.8443 0.6982 -5.5271 26 6 4.0407 -1.4458 0.1119 27 6 3.4313 -0.6849 1.2950 28 8 2.0076 -0.6758 1.1657 29 1 -0.3633 0.5121 0.8908 30 1 -0.3633 0.5155 -0.8891 31 1 -0.3633 -1.0277 -0.0019 32 1 1.8043 -0.1323 -2.1335 33 1 1.5728 -1.7014 -1.3201 34 1 6.0471 -1.7207 -1.8388 35 1 6.1599 -0.0871 -1.1411 36 1 10.4821 -0.2979 -3.6168 37 1 11.7052 0.4586 -5.5915 38 1 11.7813 2.5076 -5.8197 39 1 7.9770 1.5294 -7.4738 40 1 6.7664 0.7600 -5.4963 41 1 3.7757 -2.5010 0.1782 42 1 5.1252 -1.3375 0.1252 43 1 3.7091 -1.1777 2.2267 44 1 3.8029 0.3397 1.2993 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758680595.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:54 Heat of formation + Delta-G solvation = -168.149278 kcal Electronic energy + Delta-G solvation = -27595.535373 eV Core-core repulsion = 23476.808866 eV Total energy + Delta-G solvation = -4118.726507 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.84548 -41.14889 -39.71157 -39.34200 -37.30810 -36.05134 -36.00494 -34.10095 -32.09613 -31.66374 -30.46378 -29.80470 -27.91358 -26.81396 -24.51732 -24.24355 -23.06585 -22.44013 -21.81777 -20.58571 -20.05079 -19.13450 -18.30464 -17.90398 -17.80881 -17.58327 -16.95814 -16.57215 -16.48402 -16.14312 -16.02507 -15.68481 -15.46740 -15.28853 -14.80286 -14.62649 -14.38159 -14.11388 -13.95113 -13.87139 -13.66506 -13.24930 -13.20400 -13.05196 -12.93434 -12.76214 -12.70138 -12.23956 -12.00532 -11.91662 -11.83447 -11.74783 -11.63315 -11.42299 -11.28521 -11.03884 -11.01833 -9.89917 -9.78946 -9.76332 -9.39121 -6.71411 0.10393 0.92664 1.11728 1.22036 1.42221 1.51881 1.80775 1.83656 2.07027 2.25285 2.58547 2.67401 3.13824 3.39956 3.57165 3.80187 3.86483 3.91205 3.94572 4.01816 4.07736 4.11917 4.18391 4.26852 4.30272 4.42606 4.61019 4.68975 4.70668 4.78089 4.85111 4.89450 4.94550 4.95621 5.09726 5.20041 5.26795 5.29077 5.48620 5.57998 5.67064 5.75511 5.96795 5.99168 6.08117 6.13654 6.54352 6.66363 6.77458 6.87536 7.78769 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.034124 B = 0.001966 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.338574 B =14239.769259 C =14782.937605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.076 3.924 3 H 0.057 0.943 4 C 0.082 3.918 5 N -0.610 5.610 6 C 0.521 3.479 7 O -0.560 6.560 8 C 0.046 3.954 9 O -0.349 6.349 10 C 0.524 3.476 11 O -0.558 6.558 12 C -0.296 4.296 13 C -0.015 4.015 14 C -0.247 4.247 15 C 0.087 3.913 16 C -0.502 4.502 17 H 0.092 0.908 18 C 0.002 3.998 19 N -0.783 5.783 20 Si 1.124 2.876 21 H -0.258 1.258 22 H -0.263 1.263 23 H -0.265 1.265 24 C -0.250 4.250 25 C -0.017 4.017 26 C 0.061 3.939 27 C 0.046 3.954 28 O -0.387 6.387 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.112 0.888 37 H 0.103 0.897 38 H 0.292 0.708 39 H 0.113 0.887 40 H 0.120 0.880 41 H 0.100 0.900 42 H 0.110 0.890 43 H 0.137 0.863 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.214 -5.462 13.023 21.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.017 3.983 3 H 0.075 0.925 4 C -0.040 4.040 5 N -0.346 5.346 6 C 0.309 3.691 7 O -0.438 6.438 8 C -0.031 4.031 9 O -0.266 6.266 10 C 0.377 3.623 11 O -0.453 6.453 12 C -0.299 4.299 13 C -0.034 4.034 14 C -0.266 4.266 15 C 0.083 3.917 16 C -0.528 4.528 17 H 0.110 0.890 18 C -0.218 4.218 19 N -0.403 5.403 20 Si 0.940 3.060 21 H -0.182 1.182 22 H -0.188 1.188 23 H -0.190 1.190 24 C -0.269 4.269 25 C -0.035 4.035 26 C -0.060 4.060 27 C -0.031 4.031 28 O -0.306 6.306 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.130 0.870 37 H 0.121 0.879 38 H 0.105 0.895 39 H 0.131 0.869 40 H 0.138 0.862 41 H 0.118 0.882 42 H 0.128 0.872 43 H 0.155 0.845 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.890 -5.150 12.497 20.110 hybrid contribution -1.324 -0.109 0.618 1.465 sum -16.214 -5.259 13.115 21.507 Atomic orbital electron populations 1.21733 0.90371 1.03872 1.03745 1.22444 0.97009 0.94765 0.84034 0.92528 1.22404 0.78626 1.02850 1.00128 1.48123 1.07120 1.62757 1.16575 1.20264 0.88273 0.77436 0.83115 1.90731 1.77571 1.45339 1.30115 1.22835 0.89297 1.03403 0.87548 1.86623 1.21522 1.77488 1.40949 1.21230 0.79521 0.74454 0.87114 1.90686 1.69228 1.47180 1.38250 1.18343 0.92753 1.23303 0.95472 1.20492 0.92255 0.94002 0.96632 1.20801 0.98845 1.10431 0.96552 1.18211 0.92889 0.88128 0.92483 1.21271 0.99506 1.35679 0.96305 0.89034 1.28791 0.99080 0.89927 1.04020 1.70442 1.41062 1.24790 1.04052 0.82916 0.73726 0.78814 0.70588 1.18183 1.18779 1.18967 1.20885 0.94060 1.11971 0.99973 1.20775 0.98773 0.92059 0.91901 1.22865 1.00890 0.99760 0.82519 1.23153 0.80435 1.00581 0.98934 1.87970 1.21801 1.77448 1.43368 0.90833 0.89685 0.90989 0.89344 0.89202 0.86491 0.86571 0.86972 0.87896 0.89534 0.86880 0.86174 0.88204 0.87227 0.84530 0.92573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.57 71.98 0.69 -0.77 16 2 C 0.08 1.12 3.39 30.56 0.10 1.22 16 3 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 4 C 0.08 1.44 5.90 86.22 0.51 1.95 16 5 N -0.61 -12.05 3.03 -818.14 -2.48 -14.53 16 6 C 0.52 14.52 7.79 87.66 0.68 15.21 16 7 O -0.56 -20.72 15.97 15.76 0.25 -20.47 16 8 C 0.05 1.27 4.33 71.24 0.31 1.58 16 9 O -0.35 -13.47 8.98 -50.52 -0.45 -13.93 16 10 C 0.52 22.46 7.89 70.27 0.55 23.01 16 11 O -0.56 -24.29 16.11 19.81 0.32 -23.98 16 12 C -0.30 -13.88 5.89 -19.95 -0.12 -14.00 16 13 C -0.02 -0.72 9.52 22.26 0.21 -0.51 16 14 C -0.25 -12.50 7.89 22.47 0.18 -12.33 16 15 C 0.09 4.44 5.30 -21.28 -0.11 4.32 16 16 C -0.50 -24.88 8.98 23.46 0.21 -24.67 16 17 H 0.09 4.32 7.97 -2.91 -0.02 4.30 16 18 C 0.00 0.11 4.94 85.36 0.42 0.53 16 19 N -0.78 -39.13 12.29 21.88 0.27 -38.86 16 20 Si 1.12 38.83 30.01 68.60 2.06 40.89 16 21 H -0.26 -8.25 7.11 99.48 0.71 -7.54 16 22 H -0.26 -8.60 7.11 99.48 0.71 -7.89 16 23 H -0.27 -8.91 7.11 99.48 0.71 -8.20 16 24 C -0.25 -12.00 9.73 22.47 0.22 -11.79 16 25 C -0.02 -0.76 9.54 22.26 0.21 -0.55 16 26 C 0.06 0.75 6.54 86.35 0.57 1.31 16 27 C 0.05 0.50 6.98 72.08 0.50 1.01 16 28 O -0.39 -5.87 10.38 -148.98 -1.55 -7.42 16 29 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.09 1.86 7.08 -2.39 -0.02 1.84 16 33 H 0.09 1.37 8.13 -2.39 -0.02 1.35 16 34 H 0.12 2.73 8.01 -2.39 -0.02 2.71 16 35 H 0.12 2.70 7.65 -2.39 -0.02 2.68 16 36 H 0.11 5.12 7.63 -2.91 -0.02 5.09 16 37 H 0.10 5.30 6.48 -2.91 -0.02 5.28 16 38 H 0.29 15.30 6.70 -92.71 -0.62 14.68 16 39 H 0.11 5.04 8.06 -2.91 -0.02 5.02 16 40 H 0.12 5.15 7.59 -2.91 -0.02 5.13 16 41 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.11 1.09 6.05 -2.39 -0.01 1.07 16 43 H 0.14 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -66.64 370.62 4.73 -61.91 By element: Atomic # 1 Polarization: 29.67 SS G_CDS: 1.17 Total: 30.84 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: 5.14 Total: -14.46 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: -2.21 Total: -53.38 kcal Atomic # 8 Polarization: -64.36 SS G_CDS: -1.43 Total: -65.79 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 2.06 Total: 40.89 kcal Total: -66.64 4.73 -61.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758680595.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.240 kcal (2) G-P(sol) polarization free energy of solvation -66.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds