Wall clock time and date at job start Tue Mar 31 2020 17:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50697 * 109.47201 * 2 1 4 4 O 1.20762 * 120.00166 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00235 * 179.97438 * 3 2 1 6 6 C 1.53007 * 109.47147 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.47075 * 179.97438 * 6 5 3 8 8 O 1.45196 * 109.47023 * 179.97438 * 7 6 5 9 9 C 1.34750 * 116.99821 * 179.97438 * 8 7 6 10 10 O 1.21509 * 120.00546 * 0.02562 * 9 8 7 11 11 C 1.47469 * 120.00009 * 179.97438 * 9 8 7 12 12 C 1.39842 * 120.06576 * 0.29748 * 11 9 8 13 13 C 1.37607 * 119.92766 * 180.27360 * 12 11 9 14 14 C 1.39265 * 120.06987 * 359.45348 * 13 12 11 15 15 N 1.39069 * 119.93377 * 180.27670 * 14 13 12 16 16 C 1.34779 * 120.00240 * 33.63920 * 15 14 13 17 17 O 1.21726 * 119.99836 * 5.28426 * 16 15 14 18 18 C 1.46200 * 120.00357 * 185.28137 * 16 15 14 19 19 H 1.07998 * 119.99750 * 0.02562 * 18 16 15 20 20 C 1.40120 * 120.00014 * 180.02562 * 18 16 15 21 21 N 1.30637 * 120.00149 * 359.97438 * 20 18 16 22 22 Si 1.86793 * 119.99990 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47445 * 90.00191 * 22 20 18 24 24 H 1.48503 * 109.47254 * 209.99954 * 22 20 18 25 25 H 1.48500 * 109.47058 * 329.99657 * 22 20 18 26 26 C 1.39273 * 120.13791 * 0.24942 * 14 13 12 27 27 C 1.37611 * 120.06421 * 0.02805 * 26 14 13 28 28 H 1.09006 * 109.47387 * 60.00615 * 1 2 3 29 29 H 1.08998 * 109.47224 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47670 * 300.00278 * 1 2 3 31 31 H 1.08995 * 109.47670 * 239.99722 * 2 1 3 32 32 H 1.09008 * 109.46985 * 119.99725 * 2 1 3 33 33 H 1.08994 * 109.47343 * 59.99783 * 5 3 2 34 34 H 1.09003 * 109.47191 * 299.99408 * 5 3 2 35 35 H 1.08994 * 109.47054 * 59.99756 * 6 5 3 36 36 H 1.09003 * 109.46714 * 299.99850 * 6 5 3 37 37 H 1.09001 * 109.47130 * 59.99310 * 7 6 5 38 38 H 1.09004 * 109.46811 * 299.99835 * 7 6 5 39 39 H 1.07996 * 120.03320 * 359.97438 * 12 11 9 40 40 H 1.08000 * 119.96104 * 179.72348 * 13 12 11 41 41 H 0.97002 * 120.00141 * 213.64507 * 15 14 13 42 42 H 0.97004 * 120.00211 * 179.97438 * 21 20 18 43 43 H 1.07993 * 119.96841 * 180.02562 * 26 14 13 44 44 H 1.08004 * 120.03335 * 180.02562 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2476 2.3387 -0.0005 5 6 3.5139 1.6962 0.0006 6 6 3.7517 3.2077 -0.0002 7 6 5.2559 3.4873 0.0011 8 8 5.4816 4.9216 -0.0003 9 6 6.7627 5.3393 0.0011 10 8 7.6666 4.5272 0.0029 11 6 7.0679 6.7820 -0.0007 12 6 6.0288 7.7179 0.0024 13 6 6.3167 9.0635 -0.0050 14 6 7.6413 9.4936 -0.0041 15 7 7.9291 10.8542 -0.0057 16 6 7.1171 11.7156 0.6386 17 8 6.1870 11.2951 1.3017 18 6 7.3534 13.1551 0.5413 19 1 8.1784 13.5283 -0.0473 20 6 6.5095 14.0506 1.2117 21 7 5.5113 13.5992 1.9232 22 14 6.8110 15.8897 1.0867 23 1 6.0602 16.4369 -0.0718 24 1 6.3500 16.5528 2.3329 25 1 8.2625 16.1418 0.8997 26 6 8.6784 8.5641 -0.0009 27 6 8.3968 7.2171 0.0007 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.9654 1.2573 -0.8891 34 1 3.9646 1.2576 0.8909 35 1 3.3001 3.6469 0.8892 36 1 3.3010 3.6459 -0.8907 37 1 5.7079 3.0478 -0.8882 38 1 5.7062 3.0491 0.8918 39 1 5.0014 7.3849 0.0057 40 1 5.5147 9.7867 -0.0071 41 1 8.7142 11.1834 -0.4707 42 1 4.9273 14.2191 2.3876 43 1 9.7045 8.9007 0.0002 44 1 9.2015 6.4966 0.0036 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759436939.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:10 Heat of formation + Delta-G solvation = -154.418546 kcal Electronic energy + Delta-G solvation = -26436.787779 eV Core-core repulsion = 22318.656681 eV Total energy + Delta-G solvation = -4118.131097 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.40303 -39.98942 -39.13755 -37.11503 -36.36529 -34.11182 -33.63186 -33.26242 -32.58628 -30.57192 -29.71263 -28.26808 -26.53067 -24.83517 -23.43076 -22.32417 -21.79351 -21.03324 -19.86658 -19.69724 -17.84707 -17.58900 -17.04508 -16.84465 -16.43943 -16.07414 -16.06657 -15.59824 -15.08772 -14.76850 -14.51996 -14.08743 -14.05285 -13.61081 -13.43601 -13.20178 -13.01484 -12.79294 -12.70761 -12.62659 -12.35770 -12.17308 -12.06457 -11.92413 -11.63702 -11.58599 -11.43064 -11.36615 -11.15923 -10.82350 -10.68248 -10.54962 -10.41485 -10.33781 -9.94895 -9.50474 -9.00374 -8.62704 -7.90171 -7.31541 -6.44973 -4.93215 1.13769 1.59427 1.86338 2.67722 2.84833 3.02749 3.09506 3.12772 3.60016 3.90683 4.12833 4.40463 4.41474 4.45900 4.52813 4.55057 4.65879 4.69433 4.92733 5.00682 5.01143 5.16293 5.23281 5.26967 5.34783 5.36449 5.44632 5.47453 5.51805 5.71965 5.76186 5.76575 5.86219 5.92300 6.07680 6.37570 6.46329 6.69818 6.78866 6.88798 7.14644 7.15711 7.21001 7.58014 7.87153 7.95478 8.02101 8.74538 9.03818 10.24212 10.45034 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.017052 B = 0.001813 C = 0.001652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.666357 B =15439.954046 C =16946.914292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.175 4.175 3 C 0.353 3.647 4 O -0.446 6.446 5 C -0.169 4.169 6 C -0.114 4.114 7 C 0.069 3.931 8 O -0.353 6.353 9 C 0.520 3.480 10 O -0.526 6.526 11 C -0.189 4.189 12 C -0.036 4.036 13 C -0.149 4.149 14 C 0.237 3.763 15 N -0.694 5.694 16 C 0.538 3.462 17 O -0.554 6.554 18 C -0.535 4.535 19 H 0.074 0.926 20 C 0.086 3.914 21 N -0.756 5.756 22 Si 0.915 3.085 23 H -0.270 1.270 24 H -0.277 1.277 25 H -0.263 1.263 26 C -0.194 4.194 27 C -0.027 4.027 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.131 0.869 40 H 0.147 0.853 41 H 0.397 0.603 42 H 0.274 0.726 43 H 0.127 0.873 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.241 -22.555 -5.205 23.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.213 4.213 3 C 0.227 3.773 4 O -0.319 6.319 5 C -0.207 4.207 6 C -0.152 4.152 7 C -0.005 4.005 8 O -0.270 6.270 9 C 0.367 3.633 10 O -0.417 6.417 11 C -0.192 4.192 12 C -0.056 4.056 13 C -0.170 4.170 14 C 0.135 3.865 15 N -0.335 5.335 16 C 0.345 3.655 17 O -0.436 6.436 18 C -0.571 4.571 19 H 0.092 0.908 20 C -0.136 4.136 21 N -0.383 5.383 22 Si 0.739 3.261 23 H -0.195 1.195 24 H -0.202 1.202 25 H -0.187 1.187 26 C -0.216 4.216 27 C -0.046 4.046 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.149 0.851 40 H 0.164 0.836 41 H 0.231 0.769 42 H 0.085 0.915 43 H 0.145 0.855 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.288 -22.428 -4.580 23.126 hybrid contribution 0.785 0.778 -0.197 1.123 sum -2.502 -21.650 -4.777 22.311 Atomic orbital electron populations 1.21603 0.93773 1.01815 1.03186 1.22063 0.98417 0.96103 1.04671 1.24601 0.90902 0.91021 0.70735 1.90440 1.58985 1.47666 1.34779 1.22020 0.95891 0.97602 1.05183 1.21359 0.93954 0.94627 1.05233 1.22958 0.96650 0.78415 1.02495 1.86572 1.29322 1.26515 1.84552 1.21250 0.80139 0.89962 0.71917 1.90777 1.46971 1.56121 1.47806 1.18784 0.94768 0.88384 1.17263 1.21253 0.98556 0.92249 0.93512 1.21339 0.96627 0.95632 1.03373 1.18299 0.93220 0.85400 0.89606 1.44313 1.30528 1.03604 1.55071 1.18475 0.81550 0.86602 0.78878 1.90659 1.31678 1.78426 1.42826 1.20873 1.15194 0.88667 1.32375 0.90795 1.25759 0.93738 1.00946 0.93187 1.69972 1.11235 1.36253 1.20886 0.86242 0.79634 0.81801 0.78436 1.19486 1.20219 1.18714 1.20821 0.98577 0.92176 1.10029 1.20820 0.94634 0.95213 0.93919 0.92102 0.92089 0.92088 0.88427 0.88412 0.88012 0.87984 0.89991 0.90038 0.91283 0.91250 0.85083 0.83582 0.76899 0.91528 0.85464 0.85235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.20 37.15 0.34 -0.50 16 2 C -0.18 -0.78 6.36 -27.89 -0.18 -0.96 16 3 C 0.35 2.55 7.16 -29.04 -0.21 2.35 16 4 O -0.45 -5.11 15.61 6.00 0.09 -5.02 16 5 C -0.17 -0.97 5.64 -27.88 -0.16 -1.12 16 6 C -0.11 -1.03 4.89 -26.73 -0.13 -1.16 16 7 C 0.07 0.73 5.48 37.16 0.20 0.94 16 8 O -0.35 -5.09 9.46 -40.63 -0.38 -5.47 16 9 C 0.52 8.44 7.89 34.49 0.27 8.71 16 10 O -0.53 -9.15 16.13 -19.27 -0.31 -9.46 16 11 C -0.19 -3.21 5.88 -104.94 -0.62 -3.82 16 12 C -0.04 -0.64 9.60 -39.21 -0.38 -1.02 16 13 C -0.15 -3.04 8.62 -39.43 -0.34 -3.38 16 14 C 0.24 4.70 6.27 -83.81 -0.53 4.18 16 15 N -0.69 -14.68 5.30 -11.19 -0.06 -14.74 16 16 C 0.54 14.25 7.46 -13.06 -0.10 14.15 16 17 O -0.55 -16.64 12.69 5.17 0.07 -16.57 16 18 C -0.54 -14.03 9.54 -35.68 -0.34 -14.37 16 19 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 20 C 0.09 2.23 5.50 -17.35 -0.10 2.14 16 21 N -0.76 -21.30 11.82 55.55 0.66 -20.65 16 22 Si 0.91 18.89 29.56 -169.99 -5.02 13.87 16 23 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 24 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 25 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 26 C -0.19 -3.23 9.94 -39.43 -0.39 -3.62 16 27 C -0.03 -0.43 9.58 -39.21 -0.38 -0.81 16 28 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 31 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.10 0.27 8.14 -51.92 -0.42 -0.15 16 33 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 36 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.13 2.09 7.60 -52.49 -0.40 1.69 16 40 H 0.15 3.38 6.41 -52.49 -0.34 3.04 16 41 H 0.40 7.03 8.79 -40.82 -0.36 6.67 16 42 H 0.27 6.99 8.29 -40.82 -0.34 6.65 16 43 H 0.13 1.78 8.06 -52.49 -0.42 1.35 16 44 H 0.13 1.87 7.64 -52.48 -0.40 1.47 16 LS Contribution 384.91 15.07 5.80 5.80 Total: -1.00 -34.41 384.91 -8.28 -42.69 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -6.11 Total: 7.85 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: -3.01 Total: 1.69 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: 0.60 Total: -35.38 kcal Atomic # 8 Polarization: -35.99 SS G_CDS: -0.54 Total: -36.53 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.02 Total: 13.87 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.41 -8.28 -42.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759436939.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.724 kcal (2) G-P(sol) polarization free energy of solvation -34.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds