Wall clock time and date at job start Tue Mar 31 2020 17:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50697 * 109.47201 * 2 1 4 4 O 1.20762 * 120.00166 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00235 * 179.97438 * 3 2 1 6 6 C 1.53007 * 109.47147 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.47075 * 179.97438 * 6 5 3 8 8 O 1.45196 * 109.47023 * 179.97438 * 7 6 5 9 9 C 1.34750 * 116.99821 * 179.97438 * 8 7 6 10 10 O 1.21509 * 120.00546 * 0.02562 * 9 8 7 11 11 C 1.47469 * 120.00009 * 179.97438 * 9 8 7 12 12 C 1.39842 * 120.06576 * 0.29748 * 11 9 8 13 13 C 1.37607 * 119.92766 * 180.27360 * 12 11 9 14 14 C 1.39265 * 120.06987 * 359.45348 * 13 12 11 15 15 N 1.39069 * 119.93377 * 180.27670 * 14 13 12 16 16 C 1.34779 * 120.00240 * 33.63920 * 15 14 13 17 17 O 1.21726 * 119.99836 * 5.28426 * 16 15 14 18 18 C 1.46200 * 120.00357 * 185.28137 * 16 15 14 19 19 H 1.07998 * 119.99750 * 0.02562 * 18 16 15 20 20 C 1.40120 * 120.00014 * 180.02562 * 18 16 15 21 21 N 1.30637 * 120.00149 * 359.97438 * 20 18 16 22 22 Si 1.86793 * 119.99990 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47445 * 90.00191 * 22 20 18 24 24 H 1.48503 * 109.47254 * 209.99954 * 22 20 18 25 25 H 1.48500 * 109.47058 * 329.99657 * 22 20 18 26 26 C 1.39273 * 120.13791 * 0.24942 * 14 13 12 27 27 C 1.37611 * 120.06421 * 0.02805 * 26 14 13 28 28 H 1.09006 * 109.47387 * 60.00615 * 1 2 3 29 29 H 1.08998 * 109.47224 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47670 * 300.00278 * 1 2 3 31 31 H 1.08995 * 109.47670 * 239.99722 * 2 1 3 32 32 H 1.09008 * 109.46985 * 119.99725 * 2 1 3 33 33 H 1.08994 * 109.47343 * 59.99783 * 5 3 2 34 34 H 1.09003 * 109.47191 * 299.99408 * 5 3 2 35 35 H 1.08994 * 109.47054 * 59.99756 * 6 5 3 36 36 H 1.09003 * 109.46714 * 299.99850 * 6 5 3 37 37 H 1.09001 * 109.47130 * 59.99310 * 7 6 5 38 38 H 1.09004 * 109.46811 * 299.99835 * 7 6 5 39 39 H 1.07996 * 120.03320 * 359.97438 * 12 11 9 40 40 H 1.08000 * 119.96104 * 179.72348 * 13 12 11 41 41 H 0.97002 * 120.00141 * 213.64507 * 15 14 13 42 42 H 0.97004 * 120.00211 * 179.97438 * 21 20 18 43 43 H 1.07993 * 119.96841 * 180.02562 * 26 14 13 44 44 H 1.08004 * 120.03335 * 180.02562 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2476 2.3387 -0.0005 5 6 3.5139 1.6962 0.0006 6 6 3.7517 3.2077 -0.0002 7 6 5.2559 3.4873 0.0011 8 8 5.4816 4.9216 -0.0003 9 6 6.7627 5.3393 0.0011 10 8 7.6666 4.5272 0.0029 11 6 7.0679 6.7820 -0.0007 12 6 6.0288 7.7179 0.0024 13 6 6.3167 9.0635 -0.0050 14 6 7.6413 9.4936 -0.0041 15 7 7.9291 10.8542 -0.0057 16 6 7.1171 11.7156 0.6386 17 8 6.1870 11.2951 1.3017 18 6 7.3534 13.1551 0.5413 19 1 8.1784 13.5283 -0.0473 20 6 6.5095 14.0506 1.2117 21 7 5.5113 13.5992 1.9232 22 14 6.8110 15.8897 1.0867 23 1 6.0602 16.4369 -0.0718 24 1 6.3500 16.5528 2.3329 25 1 8.2625 16.1418 0.8997 26 6 8.6784 8.5641 -0.0009 27 6 8.3968 7.2171 0.0007 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.9654 1.2573 -0.8891 34 1 3.9646 1.2576 0.8909 35 1 3.3001 3.6469 0.8892 36 1 3.3010 3.6459 -0.8907 37 1 5.7079 3.0478 -0.8882 38 1 5.7062 3.0491 0.8918 39 1 5.0014 7.3849 0.0057 40 1 5.5147 9.7867 -0.0071 41 1 8.7142 11.1834 -0.4707 42 1 4.9273 14.2191 2.3876 43 1 9.7045 8.9007 0.0002 44 1 9.2015 6.4966 0.0036 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759436939.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:09 Heat of formation + Delta-G solvation = -175.399306 kcal Electronic energy + Delta-G solvation = -26437.697573 eV Core-core repulsion = 22318.656681 eV Total energy + Delta-G solvation = -4119.040891 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.65444 -40.77758 -40.58362 -38.76085 -37.63044 -35.44606 -34.84142 -34.56966 -33.71958 -32.00012 -31.21647 -29.13054 -28.35252 -25.68505 -24.64393 -23.77987 -22.62521 -22.39949 -21.42914 -20.32848 -19.57519 -18.93697 -18.27979 -17.80975 -17.75093 -17.55323 -16.92663 -16.78472 -16.18017 -15.81063 -15.62662 -15.48977 -15.45146 -14.82490 -14.78964 -14.41774 -14.33423 -14.21035 -13.66832 -13.62897 -13.47808 -13.34794 -13.12679 -12.92096 -12.79770 -12.75060 -12.63013 -12.39695 -12.22322 -12.18133 -12.04103 -11.99343 -11.63679 -11.49673 -11.17677 -10.91531 -10.53612 -10.13636 -9.85560 -8.95845 -8.40000 -6.98132 -0.28293 0.44008 1.06228 1.37973 1.40798 1.50694 1.57282 1.60053 2.19466 2.34817 2.77001 2.87748 3.05418 3.52948 3.68974 3.84262 3.86648 3.90220 3.99141 4.06959 4.15425 4.27424 4.35253 4.35964 4.43999 4.46460 4.53039 4.64738 4.68981 4.97122 4.99289 4.99504 5.01966 5.06786 5.08932 5.22564 5.23622 5.31546 5.32409 5.38281 5.41178 5.66547 5.76433 6.11796 6.23540 6.63038 6.70192 6.75193 7.24735 8.28518 8.53042 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.017052 B = 0.001813 C = 0.001652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.666357 B =15439.954046 C =16946.914292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.170 4.170 3 C 0.352 3.648 4 O -0.501 6.501 5 C -0.164 4.164 6 C -0.110 4.110 7 C 0.064 3.936 8 O -0.363 6.363 9 C 0.525 3.475 10 O -0.534 6.534 11 C -0.187 4.187 12 C -0.033 4.033 13 C -0.171 4.171 14 C 0.208 3.792 15 N -0.686 5.686 16 C 0.526 3.474 17 O -0.602 6.602 18 C -0.561 4.561 19 H 0.097 0.903 20 C 0.030 3.970 21 N -0.811 5.811 22 Si 1.001 2.999 23 H -0.262 1.262 24 H -0.274 1.274 25 H -0.246 1.246 26 C -0.175 4.175 27 C -0.021 4.021 28 H 0.043 0.957 29 H 0.079 0.921 30 H 0.042 0.958 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.140 0.860 40 H 0.108 0.892 41 H 0.413 0.587 42 H 0.278 0.722 43 H 0.161 0.839 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.134 -24.374 -5.924 25.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.207 4.207 3 C 0.231 3.769 4 O -0.378 6.378 5 C -0.201 4.201 6 C -0.148 4.148 7 C -0.009 4.009 8 O -0.279 6.279 9 C 0.373 3.627 10 O -0.426 6.426 11 C -0.190 4.190 12 C -0.052 4.052 13 C -0.192 4.192 14 C 0.108 3.892 15 N -0.329 5.329 16 C 0.333 3.667 17 O -0.487 6.487 18 C -0.597 4.597 19 H 0.115 0.885 20 C -0.187 4.187 21 N -0.440 5.440 22 Si 0.820 3.180 23 H -0.186 1.186 24 H -0.199 1.199 25 H -0.169 1.169 26 C -0.196 4.196 27 C -0.040 4.040 28 H 0.062 0.938 29 H 0.098 0.902 30 H 0.061 0.939 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.158 0.842 40 H 0.126 0.874 41 H 0.250 0.750 42 H 0.088 0.912 43 H 0.179 0.821 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -0.870 -24.312 -5.338 24.906 hybrid contribution 0.019 1.103 -0.008 1.103 sum -0.851 -23.208 -5.345 23.831 Atomic orbital electron populations 1.21629 0.95200 1.02453 1.01479 1.22125 0.97148 0.94379 1.07070 1.25219 0.91302 0.91805 0.68572 1.90442 1.60298 1.49388 1.37651 1.22079 0.95188 0.95023 1.07787 1.21327 0.92646 0.97249 1.03589 1.23292 0.97635 0.76265 1.03711 1.86565 1.28244 1.29150 1.83982 1.21002 0.80622 0.89394 0.71711 1.90769 1.47350 1.56185 1.48311 1.19025 0.95034 0.88996 1.15914 1.21259 0.99577 0.91286 0.93118 1.21129 0.96376 0.96096 1.05624 1.18520 0.93846 0.85243 0.91583 1.43789 1.30351 1.03878 1.54923 1.18798 0.81436 0.87718 0.78725 1.90621 1.33760 1.79422 1.44938 1.21436 1.16180 0.89051 1.33003 0.88513 1.27006 0.92857 1.06812 0.92025 1.70137 1.12805 1.38611 1.22433 0.84955 0.80343 0.74163 0.78534 1.18645 1.19901 1.16901 1.21078 0.99151 0.91637 1.07703 1.21143 0.94901 0.95433 0.92475 0.93815 0.90172 0.93917 0.85752 0.85862 0.85150 0.85341 0.91907 0.91600 0.89818 0.90150 0.84203 0.87427 0.75005 0.91153 0.82130 0.82549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.20 71.98 0.66 -0.96 16 2 C -0.17 -1.10 6.36 29.85 0.19 -0.91 16 3 C 0.35 4.69 7.16 29.10 0.21 4.90 16 4 O -0.50 -11.93 15.61 -1.45 -0.02 -11.95 16 5 C -0.16 -1.46 5.64 29.85 0.17 -1.29 16 6 C -0.11 -1.92 4.89 30.60 0.15 -1.77 16 7 C 0.06 1.25 5.48 71.98 0.39 1.64 16 8 O -0.36 -10.12 9.46 -56.61 -0.54 -10.65 16 9 C 0.53 16.18 7.89 70.25 0.55 16.74 16 10 O -0.53 -17.21 16.13 19.81 0.32 -16.89 16 11 C -0.19 -6.13 5.88 -20.07 -0.12 -6.25 16 12 C -0.03 -1.21 9.60 22.51 0.22 -0.99 16 13 C -0.17 -7.34 8.62 22.37 0.19 -7.15 16 14 C 0.21 8.36 6.27 38.49 0.24 8.60 16 15 N -0.69 -29.53 5.30 -307.50 -1.63 -31.16 16 16 C 0.53 28.94 7.46 86.31 0.64 29.58 16 17 O -0.60 -38.27 12.69 -4.43 -0.06 -38.33 16 18 C -0.56 -29.87 9.54 24.80 0.24 -29.64 16 19 H 0.10 4.51 7.85 -2.91 -0.02 4.49 16 20 C 0.03 1.57 5.50 85.33 0.47 2.04 16 21 N -0.81 -47.55 11.82 21.85 0.26 -47.29 16 22 Si 1.00 38.74 29.56 68.60 2.03 40.76 16 23 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 24 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 25 H -0.25 -8.75 7.11 99.48 0.71 -8.04 16 26 C -0.17 -5.45 9.94 22.37 0.22 -5.23 16 27 C -0.02 -0.62 9.58 22.51 0.22 -0.40 16 28 H 0.04 0.61 8.10 -2.38 -0.02 0.59 16 29 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.04 0.60 8.10 -2.39 -0.02 0.58 16 31 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 32 H 0.12 0.23 8.14 -2.38 -0.02 0.21 16 33 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.06 1.32 8.10 -2.39 -0.02 1.30 16 36 H 0.07 1.34 8.10 -2.39 -0.02 1.32 16 37 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.14 4.66 7.60 -2.91 -0.02 4.64 16 40 H 0.11 5.45 6.41 -2.91 -0.02 5.43 16 41 H 0.41 14.48 8.79 -92.71 -0.81 13.66 16 42 H 0.28 14.79 8.29 -92.71 -0.77 14.02 16 43 H 0.16 3.91 8.06 -2.91 -0.02 3.89 16 44 H 0.16 3.90 7.64 -2.91 -0.02 3.88 16 Total: -1.00 -80.06 384.91 5.22 -74.84 By element: Atomic # 1 Polarization: 31.55 SS G_CDS: 0.21 Total: 31.76 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: 4.65 Total: 8.91 kcal Atomic # 7 Polarization: -77.09 SS G_CDS: -1.37 Total: -78.46 kcal Atomic # 8 Polarization: -77.53 SS G_CDS: -0.30 Total: -77.82 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 2.03 Total: 40.76 kcal Total: -80.06 5.22 -74.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759436939.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.558 kcal (2) G-P(sol) polarization free energy of solvation -80.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds