Wall clock time and date at job start Tue Mar 31 2020 18:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47057 * 2 1 4 4 O 1.45198 * 109.47083 * 120.00097 * 2 1 3 5 5 C 1.34228 * 117.00145 * 269.99747 * 4 2 1 6 6 O 1.20828 * 120.00157 * 0.02562 * 5 4 2 7 7 C 1.50697 * 119.99833 * 180.02562 * 5 4 2 8 8 C 1.50703 * 109.47029 * 180.02562 * 7 5 4 9 9 C 1.38326 * 119.96036 * 269.72148 * 8 7 5 10 10 C 1.38280 * 120.13593 * 180.27023 * 9 8 7 11 11 C 1.38125 * 120.06813 * 0.02562 * 10 9 8 12 12 C 1.38857 * 119.92941 * 359.97438 * 11 10 9 13 13 O 1.35759 * 120.06714 * 179.97438 * 12 11 10 14 14 C 1.34831 * 116.99718 * 354.48542 * 13 12 11 15 15 H 1.07998 * 120.00057 * 5.06548 * 14 13 12 16 16 C 1.38654 * 119.99581 * 185.05723 * 14 13 12 17 17 N 1.31558 * 119.99951 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 120.00181 * 0.02562 * 16 14 13 19 19 H 1.48493 * 109.47207 * 89.99972 * 18 16 14 20 20 H 1.48498 * 109.46980 * 209.99927 * 18 16 14 21 21 H 1.48496 * 109.46974 * 329.99687 * 18 16 14 22 22 C 1.38074 * 119.96544 * 90.00097 * 8 7 5 23 23 C 1.50700 * 109.46876 * 240.00675 * 2 1 3 24 24 O 1.21290 * 119.99467 * 244.99534 * 23 2 1 25 25 N 1.34773 * 120.00270 * 64.99755 * 23 2 1 26 26 C 1.46499 * 119.99772 * 179.97438 * 25 23 2 27 27 C 1.53005 * 117.50063 * 223.74626 * 26 25 23 28 28 C 1.53000 * 117.49803 * 155.08888 * 26 25 23 29 29 H 1.09006 * 109.47206 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47379 * 299.99772 * 1 2 3 31 31 H 1.09007 * 109.47474 * 59.99830 * 1 2 3 32 32 H 1.08996 * 109.47426 * 60.00486 * 7 5 4 33 33 H 1.08994 * 109.47220 * 300.00262 * 7 5 4 34 34 H 1.07995 * 119.93590 * 0.26096 * 9 8 7 35 35 H 1.07998 * 119.96668 * 180.02562 * 10 9 8 36 36 H 1.08000 * 120.03457 * 179.97438 * 11 10 9 37 37 H 0.96999 * 120.00512 * 179.97438 * 17 16 14 38 38 H 1.08000 * 120.03806 * 359.69747 * 22 8 7 39 39 H 0.96999 * 120.00339 * 0.02562 * 25 23 2 40 40 H 1.09000 * 115.55232 * 9.42289 * 26 25 23 41 41 H 1.08999 * 117.49508 * 0.02562 * 27 26 25 42 42 H 1.09001 * 117.50071 * 145.02255 * 27 26 25 43 43 H 1.09004 * 117.49746 * 214.98098 * 28 26 25 44 44 H 1.09004 * 117.49890 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0139 -0.6845 1.1855 5 6 2.2171 0.0640 2.2811 6 8 1.9974 1.2517 2.2506 7 6 2.7193 -0.5772 3.5491 8 6 2.8611 0.4728 4.6208 9 6 4.0577 1.1506 4.7698 10 6 4.1935 2.1108 5.7556 11 6 3.1343 2.3955 6.5951 12 6 1.9319 1.7167 6.4480 13 8 0.8891 1.9939 7.2719 14 6 1.1204 2.8547 8.2835 15 1 2.0759 3.3521 8.3616 16 6 0.1315 3.1015 9.2235 17 7 0.3569 3.9418 10.2104 18 14 -1.5210 2.2409 9.0888 19 1 -1.4747 0.9601 9.8388 20 1 -2.5802 3.1109 9.6599 21 1 -1.8217 1.9676 7.6605 22 6 1.7984 0.7530 5.4566 23 6 2.0322 -0.7103 -1.2306 24 8 2.6530 -1.7466 -1.1216 25 7 1.7918 -0.1940 -2.4520 26 6 2.2806 -0.8843 -3.6482 27 6 2.9271 -0.0312 -4.7415 28 6 1.5372 -0.6336 -4.9618 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 3.6884 -1.0401 3.3631 33 1 2.0105 -1.3374 3.8772 34 1 4.8875 0.9295 4.1150 35 1 5.1289 2.6386 5.8692 36 1 3.2411 3.1452 7.3651 37 1 -0.3350 4.1147 10.8678 38 1 0.8643 0.2237 5.3395 39 1 1.2957 0.6350 -2.5392 40 1 2.6866 -1.8821 -3.4823 41 1 2.9891 1.0435 -4.5706 42 1 3.7583 -0.4680 -5.2951 43 1 1.4547 -1.4664 -5.6602 44 1 0.6842 0.0446 -4.9359 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760636982.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:43 Heat of formation + Delta-G solvation = -93.943618 kcal Electronic energy + Delta-G solvation = -27248.003658 eV Core-core repulsion = 23132.494950 eV Total energy + Delta-G solvation = -4115.508708 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.99695 -39.95898 -39.12560 -37.64113 -36.95760 -36.21631 -33.77172 -32.55607 -32.30842 -31.51170 -29.49939 -27.51645 -25.44432 -25.15060 -22.93802 -22.88176 -21.88959 -21.51657 -20.85349 -20.25158 -18.10400 -17.89621 -17.70221 -17.06299 -17.01895 -16.35437 -15.85642 -15.41347 -15.20319 -14.98489 -14.83652 -14.38433 -14.07499 -13.80174 -13.73277 -13.51317 -13.23544 -13.16488 -12.74771 -12.63592 -12.50084 -12.20419 -12.14759 -12.01384 -11.89717 -11.73865 -11.35040 -11.07772 -11.03865 -10.89583 -10.83449 -10.75429 -10.48135 -10.17281 -10.10247 -9.40640 -9.29537 -8.87699 -8.22085 -7.39371 -6.41226 -4.08175 1.75135 2.06466 2.15457 2.22382 2.29857 2.98575 3.22192 3.25571 3.36791 3.40479 4.08542 4.21604 4.23889 4.38271 4.39634 4.44605 4.48126 4.59535 4.66865 4.78522 5.01428 5.08605 5.09464 5.21957 5.23254 5.28456 5.33481 5.39068 5.52464 5.53993 5.65343 5.68276 5.80850 5.94302 6.08259 6.21456 6.24929 6.49282 6.74958 6.89902 7.04819 7.16429 7.28411 7.56846 7.67784 7.75981 7.79545 8.03451 8.93982 9.56072 10.66417 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.021251 B = 0.002091 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.259233 B =13388.086348 C =14085.728985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.070 3.930 3 H 0.112 0.888 4 O -0.333 6.333 5 C 0.461 3.539 6 O -0.488 6.488 7 C -0.063 4.063 8 C -0.046 4.046 9 C -0.186 4.186 10 C -0.076 4.076 11 C -0.214 4.214 12 C 0.159 3.841 13 O -0.218 6.218 14 C -0.389 4.389 15 H 0.106 0.894 16 C 0.063 3.937 17 N -0.880 5.880 18 Si 0.905 3.095 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.260 1.260 22 C -0.172 4.172 23 C 0.524 3.476 24 O -0.513 6.513 25 N -0.700 5.700 26 C 0.080 3.920 27 C -0.193 4.193 28 C -0.188 4.188 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.107 0.893 35 H 0.112 0.888 36 H 0.134 0.866 37 H 0.279 0.721 38 H 0.116 0.884 39 H 0.404 0.596 40 H 0.140 0.860 41 H 0.098 0.902 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.424 -8.887 -26.922 28.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.011 3.989 3 H 0.129 0.871 4 O -0.249 6.249 5 C 0.303 3.697 6 O -0.373 6.373 7 C -0.100 4.100 8 C -0.047 4.047 9 C -0.205 4.205 10 C -0.094 4.094 11 C -0.233 4.233 12 C 0.107 3.893 13 O -0.123 6.123 14 C -0.465 4.465 15 H 0.124 0.876 16 C -0.140 4.140 17 N -0.518 5.518 18 Si 0.731 3.269 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.184 1.184 22 C -0.191 4.191 23 C 0.309 3.691 24 O -0.386 6.386 25 N -0.353 5.353 26 C -0.026 4.026 27 C -0.231 4.231 28 C -0.226 4.226 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.125 0.875 35 H 0.130 0.870 36 H 0.151 0.849 37 H 0.089 0.911 38 H 0.134 0.866 39 H 0.239 0.761 40 H 0.157 0.843 41 H 0.117 0.883 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.467 -9.247 -26.620 28.288 hybrid contribution -0.913 0.526 -0.042 1.055 sum 1.554 -8.721 -26.661 28.094 Atomic orbital electron populations 1.22167 0.91649 1.04160 1.04346 1.22333 0.96107 0.97675 0.82772 0.87058 1.86654 1.77376 1.41619 1.19292 1.24019 0.74516 0.86260 0.84860 1.90714 1.46659 1.16401 1.83543 1.20268 1.04219 0.98038 0.87475 1.18657 0.94212 0.96855 0.94946 1.20459 0.97130 1.01086 1.01794 1.20752 0.97719 0.96427 0.94486 1.21332 0.93727 1.04553 1.03657 1.18996 0.87232 0.92549 0.90484 1.83572 1.32468 1.58674 1.37590 1.20761 1.03593 1.20195 1.01921 0.87623 1.24461 0.99283 0.96252 0.94008 1.69645 1.35199 1.33752 1.13167 0.86185 0.81816 0.79309 0.79625 1.19867 1.20797 1.18384 1.19958 0.99021 1.01470 0.98651 1.20213 0.79522 0.85391 0.83956 1.90745 1.38816 1.22812 1.86251 1.45239 1.57888 1.27574 1.04560 1.21623 1.02366 0.98282 0.80335 1.23466 0.96665 1.00348 1.02668 1.23409 0.95891 1.04127 0.99185 0.90700 0.90053 0.90313 0.86806 0.86807 0.87479 0.86994 0.84858 0.91067 0.86595 0.76143 0.84260 0.88320 0.87792 0.87689 0.88312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 9.50 37.16 0.35 -1.01 16 2 C 0.07 0.73 2.97 -27.88 -0.08 0.65 16 3 H 0.11 1.12 7.16 -51.93 -0.37 0.75 16 4 O -0.33 -4.37 9.42 -45.88 -0.43 -4.81 16 5 C 0.46 6.60 7.92 36.00 0.29 6.88 16 6 O -0.49 -8.36 15.25 -18.75 -0.29 -8.65 16 7 C -0.06 -0.81 5.94 -29.03 -0.17 -0.99 16 8 C -0.05 -0.79 4.37 -104.65 -0.46 -1.25 16 9 C -0.19 -3.16 9.70 -39.53 -0.38 -3.54 16 10 C -0.08 -1.39 10.04 -39.61 -0.40 -1.79 16 11 C -0.21 -4.66 9.17 -39.39 -0.36 -5.02 16 12 C 0.16 3.72 6.65 -39.11 -0.26 3.46 16 13 O -0.22 -5.79 8.59 0.02 0.00 -5.79 16 14 C -0.39 -11.01 9.95 30.89 0.31 -10.70 16 15 H 0.11 3.05 5.44 -52.49 -0.29 2.76 16 16 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 17 N -0.88 -25.45 13.96 55.48 0.77 -24.67 16 18 Si 0.91 21.74 28.62 -169.99 -4.86 16.87 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.26 -6.27 7.11 56.52 0.40 -5.87 16 22 C -0.17 -3.43 9.64 -39.40 -0.38 -3.81 16 23 C 0.52 5.53 7.18 -10.99 -0.08 5.45 16 24 O -0.51 -7.43 16.08 -14.06 -0.23 -7.66 16 25 N -0.70 -4.91 5.53 -53.80 -0.30 -5.20 16 26 C 0.08 0.52 6.43 -67.93 -0.44 0.09 16 27 C -0.19 -0.93 10.46 -26.69 -0.28 -1.21 16 28 C -0.19 -0.80 10.46 -26.69 -0.28 -1.08 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.41 7.93 -51.92 -0.41 0.00 16 32 H 0.11 1.20 8.08 -51.93 -0.42 0.78 16 33 H 0.11 1.25 8.08 -51.93 -0.42 0.83 16 34 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 35 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 36 H 0.13 3.03 5.64 -52.49 -0.30 2.74 16 37 H 0.28 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 39 H 0.40 1.72 8.61 -40.82 -0.35 1.37 16 40 H 0.14 1.11 7.40 -51.93 -0.38 0.73 16 41 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 384.31 15.07 5.79 5.79 Total: -1.00 -34.50 384.31 -8.14 -42.64 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -5.88 Total: 3.65 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -2.72 Total: -12.18 kcal Atomic # 7 Polarization: -30.35 SS G_CDS: 0.48 Total: -29.87 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: -0.94 Total: -26.90 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.86 Total: 16.87 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.50 -8.14 -42.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760636982.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.301 kcal (2) G-P(sol) polarization free energy of solvation -34.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds