Wall clock time and date at job start Tue Mar 31 2020 18:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47057 * 2 1 4 4 O 1.45198 * 109.47083 * 120.00097 * 2 1 3 5 5 C 1.34228 * 117.00145 * 269.99747 * 4 2 1 6 6 O 1.20828 * 120.00157 * 0.02562 * 5 4 2 7 7 C 1.50697 * 119.99833 * 180.02562 * 5 4 2 8 8 C 1.50703 * 109.47029 * 180.02562 * 7 5 4 9 9 C 1.38326 * 119.96036 * 269.72148 * 8 7 5 10 10 C 1.38280 * 120.13593 * 180.27023 * 9 8 7 11 11 C 1.38125 * 120.06813 * 0.02562 * 10 9 8 12 12 C 1.38857 * 119.92941 * 359.97438 * 11 10 9 13 13 O 1.35759 * 120.06714 * 179.97438 * 12 11 10 14 14 C 1.34831 * 116.99718 * 354.48542 * 13 12 11 15 15 H 1.07998 * 120.00057 * 5.06548 * 14 13 12 16 16 C 1.38654 * 119.99581 * 185.05723 * 14 13 12 17 17 N 1.31558 * 119.99951 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 120.00181 * 0.02562 * 16 14 13 19 19 H 1.48493 * 109.47207 * 89.99972 * 18 16 14 20 20 H 1.48498 * 109.46980 * 209.99927 * 18 16 14 21 21 H 1.48496 * 109.46974 * 329.99687 * 18 16 14 22 22 C 1.38074 * 119.96544 * 90.00097 * 8 7 5 23 23 C 1.50700 * 109.46876 * 240.00675 * 2 1 3 24 24 O 1.21290 * 119.99467 * 244.99534 * 23 2 1 25 25 N 1.34773 * 120.00270 * 64.99755 * 23 2 1 26 26 C 1.46499 * 119.99772 * 179.97438 * 25 23 2 27 27 C 1.53005 * 117.50063 * 223.74626 * 26 25 23 28 28 C 1.53000 * 117.49803 * 155.08888 * 26 25 23 29 29 H 1.09006 * 109.47206 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47379 * 299.99772 * 1 2 3 31 31 H 1.09007 * 109.47474 * 59.99830 * 1 2 3 32 32 H 1.08996 * 109.47426 * 60.00486 * 7 5 4 33 33 H 1.08994 * 109.47220 * 300.00262 * 7 5 4 34 34 H 1.07995 * 119.93590 * 0.26096 * 9 8 7 35 35 H 1.07998 * 119.96668 * 180.02562 * 10 9 8 36 36 H 1.08000 * 120.03457 * 179.97438 * 11 10 9 37 37 H 0.96999 * 120.00512 * 179.97438 * 17 16 14 38 38 H 1.08000 * 120.03806 * 359.69747 * 22 8 7 39 39 H 0.96999 * 120.00339 * 0.02562 * 25 23 2 40 40 H 1.09000 * 115.55232 * 9.42289 * 26 25 23 41 41 H 1.08999 * 117.49508 * 0.02562 * 27 26 25 42 42 H 1.09001 * 117.50071 * 145.02255 * 27 26 25 43 43 H 1.09004 * 117.49746 * 214.98098 * 28 26 25 44 44 H 1.09004 * 117.49890 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0139 -0.6845 1.1855 5 6 2.2171 0.0640 2.2811 6 8 1.9974 1.2517 2.2506 7 6 2.7193 -0.5772 3.5491 8 6 2.8611 0.4728 4.6208 9 6 4.0577 1.1506 4.7698 10 6 4.1935 2.1108 5.7556 11 6 3.1343 2.3955 6.5951 12 6 1.9319 1.7167 6.4480 13 8 0.8891 1.9939 7.2719 14 6 1.1204 2.8547 8.2835 15 1 2.0759 3.3521 8.3616 16 6 0.1315 3.1015 9.2235 17 7 0.3569 3.9418 10.2104 18 14 -1.5210 2.2409 9.0888 19 1 -1.4747 0.9601 9.8388 20 1 -2.5802 3.1109 9.6599 21 1 -1.8217 1.9676 7.6605 22 6 1.7984 0.7530 5.4566 23 6 2.0322 -0.7103 -1.2306 24 8 2.6530 -1.7466 -1.1216 25 7 1.7918 -0.1940 -2.4520 26 6 2.2806 -0.8843 -3.6482 27 6 2.9271 -0.0312 -4.7415 28 6 1.5372 -0.6336 -4.9618 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 3.6884 -1.0401 3.3631 33 1 2.0105 -1.3374 3.8772 34 1 4.8875 0.9295 4.1150 35 1 5.1289 2.6386 5.8692 36 1 3.2411 3.1452 7.3651 37 1 -0.3350 4.1147 10.8678 38 1 0.8643 0.2237 5.3395 39 1 1.2957 0.6350 -2.5392 40 1 2.6866 -1.8821 -3.4823 41 1 2.9891 1.0435 -4.5706 42 1 3.7583 -0.4680 -5.2951 43 1 1.4547 -1.4664 -5.6602 44 1 0.6842 0.0446 -4.9359 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760636982.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:42 Heat of formation + Delta-G solvation = -115.192852 kcal Electronic energy + Delta-G solvation = -27248.925094 eV Core-core repulsion = 23132.494950 eV Total energy + Delta-G solvation = -4116.430144 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.99952 -41.01090 -40.60256 -38.64912 -38.11221 -37.37741 -34.54440 -34.46760 -33.70811 -32.32252 -31.12059 -28.85531 -27.21412 -26.14734 -23.88611 -23.28053 -23.26161 -22.57573 -21.82307 -21.46250 -19.68184 -19.10888 -18.94635 -18.52721 -17.71950 -17.40139 -16.90081 -16.71273 -16.58241 -16.13925 -15.77414 -15.67083 -15.50003 -15.17097 -15.12892 -14.60860 -14.35471 -14.22537 -14.04661 -13.94500 -13.71019 -13.45687 -13.08146 -12.98939 -12.75618 -12.56576 -12.55633 -12.47775 -12.39510 -12.38338 -11.98635 -11.94183 -11.65556 -11.48919 -11.33034 -10.96002 -10.91224 -9.86163 -9.74827 -9.10392 -8.50070 -6.23015 0.35884 0.66316 1.10689 1.26604 1.29711 1.30751 1.35620 1.51463 2.16204 2.27863 2.77019 2.95313 3.00474 3.12728 3.38348 3.61054 3.71812 3.77077 3.82408 3.91948 4.03970 4.04448 4.05735 4.24530 4.36819 4.49011 4.56790 4.58164 4.59847 4.68153 4.74088 4.77470 4.91085 5.01759 5.02766 5.17250 5.20702 5.27208 5.37417 5.40709 5.60161 5.68428 5.74841 5.89558 6.21215 6.28788 6.67014 6.84053 7.00112 7.57917 8.61476 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.021251 B = 0.002091 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.259233 B =13388.086348 C =14085.728985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.065 3.935 3 H 0.116 0.884 4 O -0.338 6.338 5 C 0.468 3.532 6 O -0.523 6.523 7 C -0.062 4.062 8 C -0.038 4.038 9 C -0.168 4.168 10 C -0.076 4.076 11 C -0.234 4.234 12 C 0.119 3.881 13 O -0.245 6.245 14 C -0.399 4.399 15 H 0.081 0.919 16 C 0.009 3.991 17 N -0.923 5.923 18 Si 0.971 3.029 19 H -0.264 1.264 20 H -0.267 1.267 21 H -0.265 1.265 22 C -0.175 4.175 23 C 0.526 3.474 24 O -0.560 6.560 25 N -0.682 5.682 26 C 0.050 3.950 27 C -0.186 4.186 28 C -0.168 4.168 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.111 0.889 32 H 0.149 0.851 33 H 0.139 0.861 34 H 0.149 0.851 35 H 0.143 0.857 36 H 0.109 0.891 37 H 0.285 0.715 38 H 0.126 0.874 39 H 0.419 0.581 40 H 0.120 0.880 41 H 0.105 0.895 42 H 0.109 0.891 43 H 0.114 0.886 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.473 -10.367 -30.283 32.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.006 3.994 3 H 0.134 0.866 4 O -0.255 6.255 5 C 0.312 3.688 6 O -0.412 6.412 7 C -0.099 4.099 8 C -0.039 4.039 9 C -0.186 4.186 10 C -0.094 4.094 11 C -0.253 4.253 12 C 0.070 3.930 13 O -0.153 6.153 14 C -0.476 4.476 15 H 0.098 0.902 16 C -0.189 4.189 17 N -0.563 5.563 18 Si 0.793 3.207 19 H -0.188 1.188 20 H -0.192 1.192 21 H -0.189 1.189 22 C -0.194 4.194 23 C 0.311 3.689 24 O -0.437 6.437 25 N -0.334 5.334 26 C -0.055 4.055 27 C -0.225 4.225 28 C -0.206 4.206 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.129 0.871 32 H 0.167 0.833 33 H 0.156 0.844 34 H 0.167 0.833 35 H 0.160 0.840 36 H 0.127 0.873 37 H 0.094 0.906 38 H 0.144 0.856 39 H 0.256 0.744 40 H 0.138 0.862 41 H 0.124 0.876 42 H 0.127 0.873 43 H 0.132 0.868 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.530 -10.722 -30.049 32.005 hybrid contribution -0.683 0.909 0.671 1.320 sum 1.847 -9.813 -29.378 31.029 Atomic orbital electron populations 1.22180 0.89934 1.04424 1.05310 1.22601 0.97456 0.97513 0.81786 0.86644 1.86626 1.77214 1.41845 1.19793 1.24113 0.73642 0.85690 0.85349 1.90713 1.48414 1.17838 1.84186 1.20383 1.06965 0.96979 0.85540 1.19088 0.93104 0.96899 0.94764 1.21034 0.98158 0.98829 1.00568 1.21115 0.97736 0.96793 0.93778 1.21365 0.94857 1.04673 1.04440 1.19565 0.87477 0.94492 0.91458 1.83512 1.34004 1.59528 1.38260 1.20704 1.03021 1.20776 1.03066 0.90160 1.25282 1.02866 0.97088 0.93652 1.69728 1.36672 1.35610 1.14320 0.85219 0.77611 0.78661 0.79235 1.18849 1.19166 1.18910 1.20272 1.00576 1.00567 0.98009 1.20243 0.79025 0.84804 0.84803 1.90725 1.41231 1.24848 1.86909 1.45103 1.56852 1.27696 1.03733 1.21687 1.04873 0.98086 0.80856 1.23537 0.97391 1.00434 1.01096 1.23499 0.95964 1.04262 0.96894 0.90754 0.91374 0.87063 0.83294 0.84352 0.83341 0.83963 0.87278 0.90573 0.85561 0.74370 0.86232 0.87642 0.87290 0.86784 0.86920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 9.50 71.98 0.68 -1.64 16 2 C 0.06 1.24 2.97 29.85 0.09 1.33 16 3 H 0.12 2.12 7.16 -2.39 -0.02 2.11 16 4 O -0.34 -8.20 9.42 -45.06 -0.42 -8.63 16 5 C 0.47 12.18 7.92 71.23 0.56 12.75 16 6 O -0.52 -16.97 15.25 21.96 0.33 -16.64 16 7 C -0.06 -1.37 5.94 29.10 0.17 -1.20 16 8 C -0.04 -1.20 4.37 -19.88 -0.09 -1.28 16 9 C -0.17 -5.11 9.70 22.30 0.22 -4.89 16 10 C -0.08 -2.68 10.04 22.25 0.22 -2.46 16 11 C -0.23 -10.55 9.17 22.39 0.21 -10.35 16 12 C 0.12 5.72 6.65 22.58 0.15 5.87 16 13 O -0.25 -13.62 8.59 -22.85 -0.20 -13.82 16 14 C -0.40 -23.93 9.95 67.92 0.68 -23.26 16 15 H 0.08 5.04 5.44 -2.91 -0.02 5.02 16 16 C 0.01 0.55 5.49 84.83 0.47 1.02 16 17 N -0.92 -55.61 13.96 21.61 0.30 -55.31 16 18 Si 0.97 45.95 28.62 68.60 1.96 47.92 16 19 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 21 H -0.26 -12.58 7.11 99.48 0.71 -11.87 16 22 C -0.18 -6.87 9.64 22.39 0.22 -6.65 16 23 C 0.53 10.38 7.18 87.66 0.63 11.00 16 24 O -0.56 -15.92 16.08 15.69 0.25 -15.66 16 25 N -0.68 -8.21 5.53 -442.52 -2.45 -10.66 16 26 C 0.05 0.58 6.43 44.99 0.29 0.87 16 27 C -0.19 -1.36 10.46 30.62 0.32 -1.04 16 28 C -0.17 -0.97 10.46 30.62 0.32 -0.65 16 29 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 30 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.11 0.83 7.93 -2.38 -0.02 0.81 16 32 H 0.15 2.34 8.08 -2.39 -0.02 2.32 16 33 H 0.14 2.47 8.08 -2.39 -0.02 2.45 16 34 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 35 H 0.14 4.07 8.06 -2.91 -0.02 4.05 16 36 H 0.11 5.37 5.64 -2.91 -0.02 5.36 16 37 H 0.28 15.71 8.31 -92.71 -0.77 14.94 16 38 H 0.13 4.58 8.06 -2.91 -0.02 4.56 16 39 H 0.42 2.40 8.61 -92.71 -0.80 1.60 16 40 H 0.12 1.89 7.40 -2.39 -0.02 1.87 16 41 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.11 0.48 8.14 -2.38 -0.02 0.46 16 44 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 Total: -1.00 -79.89 384.31 5.16 -74.73 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: 0.24 Total: 18.65 kcal Atomic # 6 Polarization: -25.71 SS G_CDS: 5.13 Total: -20.58 kcal Atomic # 7 Polarization: -63.82 SS G_CDS: -2.14 Total: -65.97 kcal Atomic # 8 Polarization: -54.71 SS G_CDS: -0.03 Total: -54.75 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.96 Total: 47.92 kcal Total: -79.89 5.16 -74.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760636982.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.467 kcal (2) G-P(sol) polarization free energy of solvation -79.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds