Wall clock time and date at job start Tue Mar 31 2020 18:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46985 * 2 1 4 4 C 1.50696 * 109.47160 * 120.00088 * 2 1 3 5 5 H 1.08005 * 119.99725 * 119.99539 * 4 2 1 6 6 C 1.37878 * 120.00189 * 299.99829 * 4 2 1 7 7 N 1.31513 * 119.99790 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00051 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47047 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47167 * 119.99895 * 8 6 4 11 11 H 1.48495 * 109.47058 * 239.99959 * 8 6 4 12 12 N 1.46901 * 109.46538 * 240.00093 * 2 1 3 13 13 C 1.46902 * 111.00040 * 306.04362 * 12 2 1 14 14 C 1.46899 * 111.00103 * 70.00184 * 12 2 1 15 15 N 1.46499 * 109.47035 * 169.99509 * 14 12 2 16 16 N 1.40157 * 126.24192 * 269.68600 * 15 14 12 17 17 C 1.30350 * 108.04505 * 179.88274 * 16 15 14 18 18 C 1.47955 * 125.73444 * 180.13856 * 17 16 15 19 19 C 1.39481 * 119.74221 * 0.28369 * 18 17 16 20 20 C 1.38370 * 119.05726 * 179.97438 * 19 18 17 21 21 C 1.38804 * 118.52247 * 0.02562 * 20 19 18 22 22 C 1.38284 * 119.39426 * 359.97438 * 21 20 19 23 23 N 1.31732 * 120.90842 * 359.73134 * 22 21 20 24 24 N 1.38152 * 108.52473 * 0.38039 * 17 16 15 25 25 C 1.46503 * 125.86445 * 179.75378 * 24 17 16 26 26 C 1.34786 * 108.26640 * 359.75581 * 24 17 16 27 27 S 1.71201 * 126.17788 * 180.02562 * 26 24 17 28 28 H 1.08998 * 109.46985 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46803 * 299.99914 * 1 2 3 30 30 H 1.08991 * 109.47175 * 59.99483 * 1 2 3 31 31 H 0.96994 * 119.99598 * 179.97438 * 7 6 4 32 32 H 1.09005 * 109.46528 * 183.95480 * 13 12 2 33 33 H 1.09000 * 109.46785 * 303.95569 * 13 12 2 34 34 H 1.08997 * 109.47044 * 63.96124 * 13 12 2 35 35 H 1.09002 * 109.47043 * 289.99738 * 14 12 2 36 36 H 1.09001 * 109.47354 * 49.99799 * 14 12 2 37 37 H 1.08007 * 120.47208 * 0.02562 * 19 18 17 38 38 H 1.08006 * 120.74008 * 180.02562 * 20 19 18 39 39 H 1.07994 * 120.30414 * 180.02562 * 21 20 19 40 40 H 1.08002 * 119.54949 * 179.97438 * 22 21 20 41 41 H 1.08997 * 109.47474 * 270.02600 * 25 24 17 42 42 H 1.09004 * 109.46872 * 30.02654 * 25 24 17 43 43 H 1.09001 * 109.47104 * 150.02220 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9437 0.8302 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.1475 -2.2864 3.6036 10 1 3.1475 -0.1859 4.8160 11 1 1.1680 -1.5866 4.8165 12 7 2.0196 -0.6925 -1.1995 13 6 1.4342 -2.0355 -1.3078 14 6 1.7528 0.0972 -2.4091 15 7 2.4571 -0.4991 -3.5468 16 7 3.7557 -0.1884 -3.9728 17 6 4.0277 -0.9277 -5.0113 18 6 5.2978 -0.9178 -5.7702 19 6 6.3306 -0.0655 -5.3798 20 6 7.5125 -0.0682 -6.0993 21 6 7.6242 -0.9231 -7.1872 22 6 6.5604 -1.7420 -7.5189 23 7 5.4476 -1.7246 -6.8141 24 7 2.9288 -1.7180 -5.2875 25 6 2.8219 -2.6879 -6.3803 26 6 1.9718 -1.4433 -4.3790 27 16 0.4207 -2.1632 -4.2958 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 0.7091 1.1613 3.4844 32 1 1.8663 -2.5520 -2.1649 33 1 1.6466 -2.5987 -0.3991 34 1 0.3555 -1.9520 -1.4399 35 1 0.6813 0.1053 -2.6087 36 1 2.1024 1.1189 -2.2604 37 1 6.2098 0.5868 -4.5275 38 1 8.3299 0.5803 -5.8207 39 1 8.5338 -0.9490 -7.7687 40 1 6.6444 -2.4078 -8.3652 41 1 2.4227 -2.1946 -7.2664 42 1 3.8087 -3.0935 -6.6038 43 1 2.1551 -3.4975 -6.0836 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764972096.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:46 Heat of formation + Delta-G solvation = 157.717443 kcal Electronic energy + Delta-G solvation = -26200.814415 eV Core-core repulsion = 22603.556923 eV Total energy + Delta-G solvation = -3597.257492 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.132 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.67727 -40.52834 -37.56621 -35.22405 -33.70984 -33.12156 -32.57545 -30.97732 -28.82516 -28.09900 -26.61306 -25.24932 -25.09128 -24.33554 -23.51457 -22.38951 -21.55653 -19.55659 -18.23598 -17.31167 -17.03277 -16.88910 -16.34109 -16.25802 -15.88899 -15.45460 -15.06986 -14.60231 -14.46711 -14.31858 -13.81236 -13.67253 -13.38913 -13.02513 -12.85530 -12.56069 -12.36386 -11.98258 -11.66647 -11.37531 -11.22467 -11.13703 -10.97501 -10.91603 -10.64538 -10.59624 -10.45361 -10.34911 -10.10421 -10.05947 -9.93952 -9.45423 -8.96792 -8.42003 -7.60073 -7.46154 -7.10338 -6.04266 -4.07856 0.05516 0.67679 1.21307 1.43522 1.77727 2.19717 2.51242 3.27326 3.29867 3.37705 3.41810 3.43732 4.04278 4.23873 4.35371 4.39905 4.44811 4.58935 4.68602 4.79992 4.92804 5.15450 5.20322 5.28316 5.37727 5.49406 5.54856 5.59385 5.65343 5.67988 6.00636 6.06377 6.25142 6.46144 6.58296 6.67808 6.84581 6.99615 7.03211 7.07198 7.24341 7.33748 7.68172 7.76928 7.97978 8.27777 8.45078 8.96895 9.56908 11.02885 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014564 B = 0.003191 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.136921 B = 8771.687830 C =10020.566287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.219 3.781 3 H 0.042 0.958 4 C -0.498 4.498 5 H 0.063 0.937 6 C 0.060 3.940 7 N -0.893 5.893 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.285 1.285 12 N -0.544 5.544 13 C 0.035 3.965 14 C 0.299 3.701 15 N -0.345 5.345 16 N -0.238 5.238 17 C 0.300 3.700 18 C 0.186 3.814 19 C -0.116 4.116 20 C -0.070 4.070 21 C -0.154 4.154 22 C 0.107 3.893 23 N -0.469 5.469 24 N -0.481 5.481 25 C 0.085 3.915 26 C 0.461 3.539 27 S -0.585 6.585 28 H 0.038 0.962 29 H 0.091 0.909 30 H 0.008 0.992 31 H 0.261 0.739 32 H 0.041 0.959 33 H 0.070 0.930 34 H 0.041 0.959 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.153 0.847 38 H 0.147 0.853 39 H 0.143 0.857 40 H 0.167 0.833 41 H 0.080 0.920 42 H 0.111 0.889 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.935 -1.764 -22.365 26.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.114 3.886 3 H 0.060 0.940 4 C -0.536 4.536 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.532 5.532 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.211 1.211 12 N -0.270 5.270 13 C -0.113 4.113 14 C 0.090 3.910 15 N -0.138 5.138 16 N -0.061 5.061 17 C 0.022 3.978 18 C 0.049 3.951 19 C -0.139 4.139 20 C -0.096 4.096 21 C -0.175 4.175 22 C -0.052 4.052 23 N -0.180 5.180 24 N -0.181 5.181 25 C -0.056 4.056 26 C 0.100 3.900 27 S -0.457 6.457 28 H 0.057 0.943 29 H 0.110 0.890 30 H 0.027 0.973 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.060 0.940 35 H 0.109 0.891 36 H 0.127 0.873 37 H 0.171 0.829 38 H 0.165 0.835 39 H 0.161 0.839 40 H 0.184 0.816 41 H 0.099 0.901 42 H 0.130 0.870 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 13.008 -1.908 -21.588 25.276 hybrid contribution 0.692 0.040 0.543 0.880 sum 13.700 -1.868 -21.045 25.181 Atomic orbital electron populations 1.22447 0.99921 1.00230 1.00746 1.19324 0.90264 0.94360 0.84691 0.94043 1.21056 1.30736 1.12562 0.89264 0.91852 1.24901 0.95161 0.95125 0.98976 1.69885 1.36931 1.22977 1.23457 0.86427 0.78561 0.79625 0.82734 1.19771 1.21048 1.21069 1.62339 1.59809 1.03520 1.01283 1.22449 0.98003 0.90006 1.00819 1.22496 0.93908 0.94905 0.79674 1.49867 1.08600 1.30647 1.24710 1.77496 0.97856 1.20634 1.10081 1.21971 0.89556 0.92020 0.94299 1.17942 0.89060 0.95341 0.92807 1.22128 0.92519 0.98394 1.00820 1.21660 0.97181 0.97115 0.93630 1.22375 1.00618 0.96588 0.97915 1.22760 0.87709 0.97011 0.97676 1.67457 1.25598 1.19787 1.05138 1.46115 1.10353 1.34621 1.26970 1.22367 1.06108 0.91126 0.86016 1.23921 0.94139 0.87908 0.84045 1.93341 1.01354 1.64033 1.87004 0.94280 0.89003 0.97259 0.92947 0.94067 0.91106 0.94001 0.89109 0.87294 0.82936 0.83538 0.83887 0.81569 0.90125 0.87032 0.88109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.20 8.22 37.16 0.31 -3.90 16 2 C 0.22 5.43 2.31 -68.86 -0.16 5.27 16 3 H 0.04 1.09 7.93 -51.93 -0.41 0.68 16 4 C -0.50 -13.58 7.91 -34.44 -0.27 -13.85 16 5 H 0.06 1.77 7.12 -52.48 -0.37 1.40 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -25.07 11.32 55.43 0.63 -24.45 16 8 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 9 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 N -0.54 -12.04 4.84 -240.19 -1.16 -13.20 16 13 C 0.04 0.78 7.41 60.07 0.45 1.22 16 14 C 0.30 5.73 5.56 -63.32 -0.35 5.38 16 15 N -0.35 -6.19 3.58 -65.02 -0.23 -6.42 16 16 N -0.24 -3.79 12.14 32.59 0.40 -3.40 16 17 C 0.30 4.11 7.78 -153.92 -1.20 2.91 16 18 C 0.19 1.95 6.75 -83.01 -0.56 1.39 16 19 C -0.12 -0.97 9.72 -39.07 -0.38 -1.35 16 20 C -0.07 -0.38 10.16 -39.32 -0.40 -0.78 16 21 C -0.15 -0.66 10.11 -39.36 -0.40 -1.06 16 22 C 0.11 0.59 11.17 -17.58 -0.20 0.40 16 23 N -0.47 -4.11 7.57 -9.83 -0.07 -4.18 16 24 N -0.48 -6.90 3.16 -122.56 -0.39 -7.29 16 25 C 0.09 0.91 10.30 59.85 0.62 1.52 16 26 C 0.46 8.11 6.62 -86.81 -0.58 7.53 16 27 S -0.58 -11.62 27.21 -107.50 -2.93 -14.54 16 28 H 0.04 0.94 6.41 -51.93 -0.33 0.61 16 29 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 30 H 0.01 0.19 6.91 -51.93 -0.36 -0.17 16 31 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.04 0.89 5.70 -51.93 -0.30 0.59 16 33 H 0.07 1.64 6.76 -51.93 -0.35 1.29 16 34 H 0.04 0.94 6.16 -51.93 -0.32 0.62 16 35 H 0.09 1.78 6.59 -51.93 -0.34 1.44 16 36 H 0.11 1.95 7.93 -51.93 -0.41 1.54 16 37 H 0.15 1.28 7.83 -52.48 -0.41 0.87 16 38 H 0.15 0.41 8.06 -52.48 -0.42 -0.01 16 39 H 0.14 0.19 8.06 -52.49 -0.42 -0.23 16 40 H 0.17 0.40 8.06 -52.49 -0.42 -0.02 16 41 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.11 1.01 6.06 -51.93 -0.31 0.70 16 43 H 0.10 1.13 7.63 -51.93 -0.40 0.74 16 LS Contribution 359.73 15.07 5.42 5.42 Total: -1.00 -33.03 359.73 -12.04 -45.07 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -5.46 Total: 0.38 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: -3.22 Total: 6.22 kcal Atomic # 7 Polarization: -58.10 SS G_CDS: -0.83 Total: -58.94 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -11.62 SS G_CDS: -2.93 Total: -14.54 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.03 -12.04 -45.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764972096.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.783 kcal (2) G-P(sol) polarization free energy of solvation -33.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds